RLG00000024815

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002801
Physical Location & Seq
Forward (+)
39306625 .. 39307913
1289 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024815

Sequence Viewer

Length: 483 bp
ATGGTTGAAAGAGGAGGCGGCGCCGATGTTGAGCGTGGAGGCTTCTGCCACAGGTTCGGAGGTGACCGTGGTCGCAGCGGTAAGCGCCGCGGTGCTGGGCCTGAGAGAATCATGAAGATCATGCCGGTTCAGAAGCAAACCGTTTTGGTTGGAGGACTCGCTTCTTCTGTTCCTCTATCTCGTCCATGTTCCCCAACCCCGGTTGGCCGTCCCACAAGATCTTCAACAAGACGTCGTGGACCGACTTCGATTACTGCAAAATCCCGCCAGGTACTATCTATAGCTGCTGCACTTGATGAAGTTGTAGAAATGAAGAATTGTAATTTCTGTTTTGTAGTTGTGTTGGTAAATTTCTATTGGTTCTTTGATGATAACTTGAATATATATCTGAGTGAGGCGGCTATCAAGGAGGAAAGACATGAGGCACGGCGCGCTAAAAAGGAATTGAAGGGACTTTACAGGGGTGAAGCGCAGCATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.71

Weight (kDa)

10.15

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 235
AccB1I GGYRCC 1 cut(s) 20
AccII CGCG 2 cut(s) 90, 432
AciI CCGC 6 cut(s) 18, 78, 88, 90, 265, 398
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 1 cut(s) 349
AcyI GRCGYC 2 cut(s) 21, 232
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 4 cut(s) 8, 225, 379, 448
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
AoxI GGCC 2 cut(s) 98, 205
ApeKI GCWGC 4 cut(s) 75, 284, 287, 472
ApoI RAATTY 1 cut(s) 349
AspLEI GCGC 5 cut(s) 23, 87, 432, 434, 472
AspS9I GGNCC 2 cut(s) 98, 239
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 2 cut(s) 74, 476
AvaII GGWCC 1 cut(s) 239
BanI GGYRCC 1 cut(s) 20
BarI GAAGNNNNNNTAC 2 cut(s) 440, 472
BbvI GCAGC 3 cut(s) 87, 271, 274
BceAI ACGGC 2 cut(s) 192, 443
BciT130I CCWGG 1 cut(s) 269
BcnI CCSGG 1 cut(s) 200
BfmI CTRYAG 1 cut(s) 279
BfoI RGCGCY 2 cut(s) 24, 88
BglII AGATCT 1 cut(s) 218
BisI GCNGC 7 cut(s) 19, 76, 88, 285, 288, 399, 473
BlsI GCNGC 7 cut(s) 20, 77, 89, 286, 289, 400, 474
Bme1390I CCNGG 2 cut(s) 200, 269
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 2 cut(s) 98, 239
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 200, 269
BoxI GACNNNNGTC 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 200
BsaHI GRCGYC 2 cut(s) 21, 232
BsaJI CCNNGG 3 cut(s) 67, 88, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse118I RCCGGY 1 cut(s) 124
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 3 cut(s) 67, 88, 198
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 2 cut(s) 93, 380
BsePI GCGCGC 1 cut(s) 430
BseRI GAGGAG 1 cut(s) 27
BseXI GCAGC 3 cut(s) 87, 271, 274
BseYI CCCAGC 1 cut(s) 95
BsgI GTGCAG 1 cut(s) 273
Bsh1236I CGCG 2 cut(s) 90, 432
BshFI GGCC 2 cut(s) 100, 207
BshNI GGYRCC 1 cut(s) 20
BsiSI CCGG 2 cut(s) 125, 200
BslFI GGGAC 2 cut(s) 195, 465
BslI CCNNNNNNNGG 1 cut(s) 199
BsmFI GGGAC 2 cut(s) 195, 465
BsnI GGCC 2 cut(s) 100, 207
Bsp143I GATC 2 cut(s) 117, 218
BspACI CCGC 6 cut(s) 18, 78, 88, 90, 265, 398
BspANI GGCC 2 cut(s) 100, 207
BspCNI CTCAG 2 cut(s) 94, 381
BspFNI CGCG 2 cut(s) 90, 432
BspHI TCATGA 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 124
BssAI RCCGGY 1 cut(s) 124
BssECI CCNNGG 3 cut(s) 67, 88, 198
BssHII GCGCGC 1 cut(s) 430
BssMI GATC 2 cut(s) 117, 218
BssNI GRCGYC 2 cut(s) 21, 232
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 2 cut(s) 68, 142
BstACI GRCGYC 2 cut(s) 21, 232
BstC8I GCNNGC 2 cut(s) 432, 477
BstDEI CTNAG 3 cut(s) 102, 389, 480
BstDSI CCRYGG 2 cut(s) 67, 88
BstEII GGTNACC 1 cut(s) 62
BstFNI CGCG 2 cut(s) 90, 432
BstH2I RGCGCY 2 cut(s) 24, 88
BstHHI GCGC 5 cut(s) 23, 87, 432, 434, 472
BstKTI GATC 2 cut(s) 120, 221
BstMBI GATC 2 cut(s) 117, 218
BstMWI GCNNNNNNNGC 3 cut(s) 84, 431, 476
BstNI CCWGG 1 cut(s) 269
BstNSI RCATGY 1 cut(s) 479
BstPAI GACNNNNGTC 1 cut(s) 69
BstPI GGTNACC 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 198, 267
BstSFI CTRYAG 1 cut(s) 279
BstUI CGCG 2 cut(s) 90, 432
BstV1I GCAGC 3 cut(s) 87, 271, 274
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BsuRI GGCC 2 cut(s) 100, 207
BtgI CCRYGG 2 cut(s) 67, 88
Cac8I GCNNGC 2 cut(s) 432, 477
CciI TCATGA 1 cut(s) 111
CfoI GCGC 5 cut(s) 23, 87, 432, 434, 472
Cfr10I RCCGGY 1 cut(s) 124
Cfr13I GGNCC 2 cut(s) 98, 239
Cfr42I CCGCGG 1 cut(s) 91
Csp6I GTAC 1 cut(s) 272
CviAII CATG 5 cut(s) 112, 121, 186, 419, 476
CviJI RGCY 5 cut(s) 42, 100, 207, 284, 401
CviKI_1 RGCY 5 cut(s) 42, 100, 207, 284, 401
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 3 cut(s) 102, 389, 480
DinI GGCGCC 1 cut(s) 22
DpnI GATC 2 cut(s) 119, 220
DpnII GATC 2 cut(s) 117, 218
EaeI YGGCCR 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 239
Eco91I GGTNACC 1 cut(s) 62
EcoO65I GGTNACC 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 267
EgeI GGCGCC 1 cut(s) 22
EheI GGCGCC 1 cut(s) 22
FaeI CATG 5 cut(s) 115, 124, 189, 422, 479
FaiI YATR 8 cut(s) 113, 122, 187, 281, 383, 385, 420, 477
FaqI GGGAC 2 cut(s) 195, 465
FatI CATG 5 cut(s) 111, 120, 185, 418, 475
FauI CCCGC 1 cut(s) 272
Fnu4HI GCNGC 7 cut(s) 19, 76, 88, 285, 288, 399, 473
Fsp4HI GCNGC 7 cut(s) 19, 76, 88, 285, 288, 399, 473
GlaI GCGC 5 cut(s) 22, 86, 431, 433, 471
GluI GCNGC 7 cut(s) 19, 76, 88, 285, 288, 399, 473
GsaI CCCAGC 1 cut(s) 99
HaeII RGCGCY 2 cut(s) 24, 88
HaeIII GGCC 2 cut(s) 100, 207
HapII CCGG 2 cut(s) 125, 200
HhaI GCGC 5 cut(s) 23, 87, 432, 434, 472
Hin1I GRCGYC 2 cut(s) 21, 232
Hin1II CATG 5 cut(s) 115, 124, 189, 422, 479
Hin6I GCGC 5 cut(s) 21, 85, 430, 432, 470
HinP1I GCGC 5 cut(s) 21, 85, 430, 432, 470
HinfI GANTC 2 cut(s) 108, 156
HpaII CCGG 2 cut(s) 125, 200
HphI GGTGA 2 cut(s) 74, 476
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 3 cut(s) 59, 132, 390
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 1 cut(s) 239
Hpy99I CGWCG 1 cut(s) 237
HpyAV CCTTC 1 cut(s) 442
HpyCH4III ACNGT 2 cut(s) 68, 142
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 2 cut(s) 257, 290
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 431, 476
HpyF3I CTNAG 3 cut(s) 102, 389, 480
HpySE526I ACGT 1 cut(s) 232
Hsp92I GRCGYC 2 cut(s) 21, 232
Hsp92II CATG 5 cut(s) 115, 124, 189, 422, 479
HspAI GCGC 5 cut(s) 21, 85, 430, 432, 470
KasI GGCGCC 1 cut(s) 20
KspI CCGCGG 1 cut(s) 91
Kzo9I GATC 2 cut(s) 117, 218
LpnPI CCDG 8 cut(s) 37, 81, 114, 138, 213, 254, 281, 445
Lsp1109I GCAGC 3 cut(s) 87, 271, 274
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 1 cut(s) 62
MalI GATC 2 cut(s) 119, 220
MboI GATC 2 cut(s) 117, 218
MboII GAAGA 4 cut(s) 127, 156, 213, 325
MflI RGATCY 1 cut(s) 218
MluCI AATT 4 cut(s) 316, 322, 349, 443
Mly113I GGCGCC 1 cut(s) 21
MlyI GAGTC 1 cut(s) 150
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 9 cut(s) 5, 8, 32, 53, 146, 183, 388, 403, 415
MspA1I CMGCKG 2 cut(s) 78, 90
MspI CCGG 2 cut(s) 125, 200
MspR9I CCNGG 2 cut(s) 200, 269
MvaI CCWGG 1 cut(s) 269
MvnI CGCG 2 cut(s) 90, 432
MwoI GCNNNNNNNGC 3 cut(s) 84, 431, 476
NarI GGCGCC 1 cut(s) 21
NciI CCSGG 1 cut(s) 200
NdeII GATC 2 cut(s) 117, 218
NlaIII CATG 5 cut(s) 115, 124, 189, 422, 479
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 62
NspI RCATGY 1 cut(s) 479
PaeI GCATGC 1 cut(s) 479
PagI TCATGA 1 cut(s) 111
PauI GCGCGC 1 cut(s) 430
PfeI GAWTC 1 cut(s) 108
PkrI GCNGC 7 cut(s) 20, 77, 89, 286, 289, 400, 474
PleI GAGTC 1 cut(s) 150
PluTI GGCGCC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 150
PshAI GACNNNNGTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 267
PspEI GGTNACC 1 cut(s) 62
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 2 cut(s) 98, 239
PsuI RGATCY 1 cut(s) 218
PteI GCGCGC 1 cut(s) 430
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
SacII CCGCGG 1 cut(s) 91
SatI GCNGC 7 cut(s) 19, 76, 88, 285, 288, 399, 473
Sau3AI GATC 2 cut(s) 117, 218
Sau96I GGNCC 2 cut(s) 98, 239
SchI GAGTC 1 cut(s) 150
ScrFI CCNGG 2 cut(s) 200, 269
SetI ASST 5 cut(s) 56, 64, 235, 273, 286
SfcI CTRYAG 1 cut(s) 279
SfoI GGCGCC 1 cut(s) 22
Sfr303I CCGCGG 1 cut(s) 91
SgrBI CCGCGG 1 cut(s) 91
SinI GGWCC 1 cut(s) 239
SphI GCATGC 1 cut(s) 479
Sse9I AATT 4 cut(s) 316, 322, 349, 443
SsiI CCGC 6 cut(s) 18, 78, 88, 90, 265, 398
SspDI GGCGCC 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 198, 267
TaaI ACNGT 2 cut(s) 68, 142
TaiI ACGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 248
TaqII GACCGA 1 cut(s) 256
TasI AATT 4 cut(s) 316, 322, 349, 443
TauI GCSGC 3 cut(s) 21, 90, 401
TfiI GAWTC 1 cut(s) 108
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 4 cut(s) 75, 284, 287, 472
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 3 cut(s) 128, 312, 326
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 1 cut(s) 349
XceI RCATGY 1 cut(s) 479
ZraI GACGTC 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.