Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Reverse (-)

102831 .. 104451

Gene Structure 1621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00150.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGAGGAGGGTCAATGAAATCGAACCCAACCAAGGCAAGGAAGAGAGTGGAGGCCACTGAGACCCGGGAGAACTCCTTGTCAACCGTACCACCTTCTCTCGTTCGCGGCAAAGATGGCAGTGCCTTTGCCCGATGCGAGGAGTGCAACAAGGACGTGCCAGTGGCACTCATCAGCATGCACAGTTGTAGCCTCGATGCCAAAATCAAGCTCAACCTCAAGGCTCAAGTTGTGGAAAAGCCCCCTGAAGTGAAAAAGAAGCTTCCCGCTGACAGAAAGAGGTCCACAACCACCACATCACAACCAAAGACATCAAAGAGAGCCAAGAAGGACAAAGATCCAAATGCACCCAAGCGCCCTCTCACCGCCTTCTTCCTCTTCATGGATGATTTCAGGAAATCCTATAAGGAAGCTAATCCTGATTCCAAAGGCGTTAAGATGGTTGCAAAGGAGGGTGGTGAGAAGTGGAAGTCTATGACTGATGAGGAGAAGAAGCCCTACGTGGATAAAGCTGCTGAGCTTAAAGAAGAGTACAAAATAGCACTGGAGAGTGACATTGCAGAAGCTAGGGATGGTGAAACACCGGAAGGGGTTTTGGAGAAAGAAGCTTCAGAGAAGGAAGGGGAGGAAGAAATAACTGATGTTGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

218

Amino Acids

24.11

Weight (kDa)

8.24

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	108
AciI	CCGC	3 cut(s)	108, 267, 366
AclWI	GGATC	1 cut(s)	332
AcuI	CTGAAG	2 cut(s)	267, 594
AfaI	GTAC	2 cut(s)	90, 533
AfiI	CCNNNNNNNGG	4 cut(s)	34, 39, 139, 382
AjiI	CACGTC	1 cut(s)	157
AluBI	AGCT	7 cut(s)	211, 262, 413, 512, 520, 566, 608
AluI	AGCT	7 cut(s)	211, 262, 413, 512, 520, 566, 608
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	66
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	512
AspLEI	GCGC	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	282
AsuC2I	CCSGG	2 cut(s)	67, 68
AsuHPI	GGTGA	3 cut(s)	355, 470, 587
AvaI	CYCGRG	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	282
BarI	GAAGNNNNNNTAC	2 cut(s)	482, 514
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	3 cut(s)	110, 433, 566
BcnI	CCSGG	2 cut(s)	67, 68
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	1 cut(s)	567
BfoI	RGCGCY	1 cut(s)	358
BisI	GCNGC	2 cut(s)	109, 513
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	2 cut(s)	110, 514
Bme1390I	CCNGG	2 cut(s)	67, 68
Bme18I	GGWCC	1 cut(s)	282
BmeT110I	CYCGRG	1 cut(s)	66
BmgBI	CACGTC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	282
BmrFI	CCNGG	2 cut(s)	67, 68
BmsI	GCATC	2 cut(s)	125, 187
BpmI	CTGGAG	1 cut(s)	566
Bpu1102I	GCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	2 cut(s)	203, 210
BpuMI	CCSGG	2 cut(s)	67, 68
BsaAI	YACGTR	1 cut(s)	502
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	33, 66
BsaWI	WCCGGW	1 cut(s)	583
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 39, 139, 382
Bse1I	ACTGG	2 cut(s)	161, 549
Bse3DI	GCAATG	1 cut(s)	555
BseDI	CCNNGG	2 cut(s)	33, 66
BseGI	GGATG	2 cut(s)	391, 577
BseLI	CCNNNNNNNGG	4 cut(s)	34, 39, 139, 382
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	2 cut(s)	51, 507
BseNI	ACTGG	2 cut(s)	161, 549
BseRI	GAGGAG	3 cut(s)	21, 155, 500
BseXI	GCAGC	1 cut(s)	499
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	67, 584
BslI	CCNNNNNNNGG	4 cut(s)	34, 39, 139, 382
BsmAI	GTCTC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	337
Bsp1720I	GCTNAGC	1 cut(s)	516
BspACI	CCGC	3 cut(s)	108, 267, 366
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	52, 508
BspFNI	CGCG	1 cut(s)	108
BspPI	GGATC	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	555
BsrI	ACTGG	2 cut(s)	161, 549
BssECI	CCNNGG	2 cut(s)	33, 66
BssMI	GATC	1 cut(s)	337
BssT1I	CCWWGG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	88, 185
Bst6I	CTCTTC	3 cut(s)	38, 383, 522
BstBAI	YACGTR	1 cut(s)	502
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	2 cut(s)	60, 516
BstF5I	GGATG	2 cut(s)	391, 577
BstFNI	CGCG	1 cut(s)	108
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 144
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	65, 66
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	499
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	56
BtrI	CACGTC	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	391, 577
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	4 cut(s)	57, 127, 168, 542
Cac8I	GCNNGC	1 cut(s)	179
CfoI	GCGC	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	282
Cfr9I	CCCGGG	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	89, 532
CviAII	CATG	2 cut(s)	178, 382
CviQI	GTAC	2 cut(s)	89, 532
DdeI	CTNAG	2 cut(s)	60, 516
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eam1104I	CTCTTC	3 cut(s)	38, 383, 522
EarI	CTCTTC	3 cut(s)	38, 383, 522
Eco130I	CCWWGG	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	282
Eco57I	CTGAAG	2 cut(s)	267, 594
Eco88I	CYCGRG	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	181, 385
FaiI	YATR	4 cut(s)	179, 383, 405, 476
FatI	CATG	2 cut(s)	177, 381
FauI	CCCGC	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	109, 513
FokI	GGATG	2 cut(s)	398, 584
Fsp4HI	GCNGC	2 cut(s)	109, 513
FspBI	CTAG	1 cut(s)	567
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	2 cut(s)	109, 513
GsuI	CTGGAG	1 cut(s)	566
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	2 cut(s)	67, 584
HhaI	GCGC	1 cut(s)	357
Hin1II	CATG	2 cut(s)	181, 385
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HindIII	AAGCTT	2 cut(s)	260, 606
HinfI	GANTC	1 cut(s)	422
HpaII	CCGG	2 cut(s)	67, 584
HphI	GGTGA	3 cut(s)	355, 470, 587
Hpy166II	GTNNAC	2 cut(s)	84, 285
Hpy188I	TCNGA	1 cut(s)	613
Hpy188III	TCNNGA	2 cut(s)	394, 419
Hpy8I	GTNNAC	2 cut(s)	84, 285
HpyAV	CCTTC	6 cut(s)	105, 322, 379, 581, 610, 614
HpyCH4III	ACNGT	2 cut(s)	88, 185
HpyCH4IV	ACGT	2 cut(s)	156, 501
HpyCH4V	TGCA	5 cut(s)	147, 181, 347, 446, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 144
HpyF3I	CTNAG	2 cut(s)	60, 516
HpySE526I	ACGT	2 cut(s)	156, 501
Hsp92II	CATG	2 cut(s)	181, 385
HspAI	GCGC	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	337
LpnPI	CCDG	7 cut(s)	80, 174, 258, 379, 432, 530, 597
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	2 cut(s)	125, 187
MaeI	CTAG	1 cut(s)	567
MaeII	ACGT	2 cut(s)	156, 501
MaeIII	GTNAC	1 cut(s)	551
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	6 cut(s)	55, 364, 370, 502, 539, 641
MflI	RGATCY	1 cut(s)	337
MseI	TTAA	2 cut(s)	435, 522
MslI	CAYNNNNRTG	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	2 cut(s)	67, 584
MspR9I	CCNGG	2 cut(s)	67, 68
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	117, 144
NciI	CCSGG	2 cut(s)	67, 68
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	2 cut(s)	181, 385
NmuCI	GTSAC	1 cut(s)	551
NspI	RCATGY	1 cut(s)	181
PaeI	GCATGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	422
PkrI	GCNGC	2 cut(s)	110, 514
Ppu21I	YACGTR	1 cut(s)	502
PspPI	GGNCC	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	2 cut(s)	90, 533
RsaNI	GTAC	2 cut(s)	89, 532
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	435, 522
SatI	GCNGC	2 cut(s)	109, 513
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	67, 68
SfaNI	GCATC	2 cut(s)	125, 187
SinI	GGWCC	1 cut(s)	282
SmaI	CCCGGG	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	176
SmlI	CTYRAG	2 cut(s)	218, 225
SmoI	CTYRAG	2 cut(s)	218, 225
SphI	GCATGC	1 cut(s)	181
SsiI	CCGC	3 cut(s)	108, 267, 366
SspMI	CTAG	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	65, 66
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	2 cut(s)	88, 185
TaiI	ACGT	2 cut(s)	159, 504
TaqI	TCGA	2 cut(s)	23, 195
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	2 cut(s)	435, 522
Tru9I	TTAA	2 cut(s)	435, 522
TscAI	CASTG	4 cut(s)	64, 127, 168, 549
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	1 cut(s)	512
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	2 cut(s)	32, 370
TspMI	CCCGGG	1 cut(s)	66
TspRI	CASTG	4 cut(s)	64, 127, 168, 549
VpaK11BI	GGWCC	1 cut(s)	282
XceI	RCATGY	1 cut(s)	181
XmaI	CCCGGG	1 cut(s)	66
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.