Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Forward (+)

6257508 .. 6259199

Gene Structure 1692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG046400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGTTGAAAGAGGAGGTGGCGCCGATGTTGAACGTGGAGGCTTCTGCCACAGGTTCGGAGGTGACCGTGGTCGCGGCGGTAGGCGCCGCGGTGCTGGGCCTGAGAGAATCATGAAGATCATGCCGGTTCAGAAGCAAACCGTTTTGGTTAGAGGACTCGCTTCTTCTGTTCCTCTATCTCGGCCATGTTCCCCAACCCCGGTTGGCCGTCCTACAAGGTCTTTAACAAGACGTCGTGGACCGACTTCGATTACTGCAAAATCCCGCCAGGATGTGCAGCCATCTGTATCTCAAGCCTCAGTTTCTAGTTCACCAGCAGGGGCTCCTTCAACTCCAACTACCGCTCCACTTGCTTCAAGTGCGGGCACACCGTCATTCTCTTACAGTGTGCCTCCAAACACAAATATCACTTTTGGAACCTCTCAACAGCCATCACCTAGTTTTATGTTGGAACCTCCCACTTTTGACACTGTTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

16.62

Weight (kDa)

11.63

Isoelectric Point (pI)

76.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	235
AccB1I	GGYRCC	2 cut(s)	20, 84
AccBSI	CCGCTC	1 cut(s)	344
AccII	CGCG	2 cut(s)	75, 90
AciI	CCGC	7 cut(s)	75, 78, 88, 90, 265, 342, 362
AcoI	YGGCCR	2 cut(s)	182, 205
AcyI	GRCGYC	3 cut(s)	21, 85, 232
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	4 cut(s)	8, 32, 330, 357
AjnI	CCWGG	1 cut(s)	267
AoxI	GGCC	3 cut(s)	98, 182, 205
ApeKI	GCWGC	1 cut(s)	277
AspLEI	GCGC	2 cut(s)	23, 87
AspS9I	GGNCC	2 cut(s)	98, 239
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	3 cut(s)	74, 303, 426
AvaII	GGWCC	1 cut(s)	239
BaeGI	GKGCMC	1 cut(s)	368
BanI	GGYRCC	2 cut(s)	20, 84
BanII	GRGCYC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	2 cut(s)	289, 439
BceAI	ACGGC	1 cut(s)	192
BciT130I	CCWGG	1 cut(s)	269
BcnI	CCSGG	1 cut(s)	200
BfaI	CTAG	2 cut(s)	306, 438
BfoI	RGCGCY	2 cut(s)	24, 88
BisI	GCNGC	3 cut(s)	76, 88, 278
BlsI	GCNGC	3 cut(s)	77, 89, 279
Bme1390I	CCNGG	2 cut(s)	200, 269
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	2 cut(s)	98, 239
BmiI	GGNNCC	5 cut(s)	22, 86, 324, 418, 453
BmrFI	CCNGG	2 cut(s)	200, 269
BoxI	GACNNNNGTC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	200
BsaHI	GRCGYC	3 cut(s)	21, 85, 232
BsaJI	CCNNGG	3 cut(s)	67, 88, 198
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse118I	RCCGGY	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	3 cut(s)	67, 88, 198
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMII	CTCAG	2 cut(s)	93, 312
BseRI	GAGGAG	1 cut(s)	27
BseSI	GKGCMC	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	289
BseYI	CCCAGC	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	296
Bsh1236I	CGCG	2 cut(s)	75, 90
BshFI	GGCC	3 cut(s)	100, 184, 207
BshNI	GGYRCC	2 cut(s)	20, 84
BsiSI	CCGG	2 cut(s)	125, 200
BslI	CCNNNNNNNGG	1 cut(s)	199
BsnI	GGCC	3 cut(s)	100, 184, 207
Bsp1286I	GDGCHC	2 cut(s)	325, 368
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	7 cut(s)	75, 78, 88, 90, 265, 342, 362
BspANI	GGCC	3 cut(s)	100, 184, 207
BspCNI	CTCAG	2 cut(s)	94, 311
BspFNI	CGCG	2 cut(s)	75, 90
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	5 cut(s)	22, 86, 324, 418, 453
BspT107I	GGYRCC	2 cut(s)	20, 84
BsrBI	CCGCTC	1 cut(s)	344
BsrFI	RCCGGY	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	3 cut(s)	67, 88, 198
BssMI	GATC	1 cut(s)	117
BssNI	GRCGYC	3 cut(s)	21, 85, 232
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	5 cut(s)	68, 142, 372, 386, 472
BstACI	GRCGYC	3 cut(s)	21, 85, 232
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	2 cut(s)	102, 298
BstDSI	CCRYGG	2 cut(s)	67, 88
BstEII	GGTNACC	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	2 cut(s)	75, 90
BstH2I	RGCGCY	2 cut(s)	24, 88
BstHHI	GCGC	2 cut(s)	23, 87
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 350, 359
BstNI	CCWGG	1 cut(s)	269
BstPAI	GACNNNNGTC	1 cut(s)	69
BstPI	GGTNACC	1 cut(s)	62
BstSCI	CCNGG	2 cut(s)	198, 267
BstSLI	GKGCMC	1 cut(s)	368
BstUI	CGCG	2 cut(s)	75, 90
BstV1I	GCAGC	1 cut(s)	289
BsuRI	GGCC	3 cut(s)	100, 184, 207
BtgI	CCRYGG	2 cut(s)	67, 88
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	2 cut(s)	391, 468
Cac8I	GCNNGC	1 cut(s)	364
CciI	TCATGA	1 cut(s)	111
CfoI	GCGC	2 cut(s)	23, 87
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	98, 239
Cfr42I	CCGCGG	1 cut(s)	91
CviAII	CATG	3 cut(s)	112, 121, 186
CviJI	RGCY	8 cut(s)	42, 100, 184, 207, 280, 296, 323, 430
CviKI_1	RGCY	8 cut(s)	42, 100, 184, 207, 280, 296, 323, 430
DdeI	CTNAG	2 cut(s)	102, 298
DinI	GGCGCC	2 cut(s)	22, 86
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
EaeI	YGGCCR	2 cut(s)	182, 205
Eco24I	GRGCYC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	239
Eco91I	GGTNACC	1 cut(s)	62
EcoO65I	GGTNACC	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	325
EgeI	GGCGCC	2 cut(s)	22, 86
EheI	GGCGCC	2 cut(s)	22, 86
FaeI	CATG	3 cut(s)	115, 124, 189
FaiI	YATR	4 cut(s)	113, 122, 187, 446
FatI	CATG	3 cut(s)	111, 120, 185
FauI	CCCGC	2 cut(s)	272, 355
Fnu4HI	GCNGC	3 cut(s)	76, 88, 278
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	325
Fsp4HI	GCNGC	3 cut(s)	76, 88, 278
FspBI	CTAG	2 cut(s)	306, 438
GlaI	GCGC	2 cut(s)	22, 86
GluI	GCNGC	3 cut(s)	76, 88, 278
GsaI	CCCAGC	1 cut(s)	99
HaeII	RGCGCY	2 cut(s)	24, 88
HaeIII	GGCC	3 cut(s)	100, 184, 207
HapII	CCGG	2 cut(s)	125, 200
HhaI	GCGC	2 cut(s)	23, 87
Hin1I	GRCGYC	3 cut(s)	21, 85, 232
Hin1II	CATG	3 cut(s)	115, 124, 189
Hin6I	GCGC	2 cut(s)	21, 85
HinP1I	GCGC	2 cut(s)	21, 85
HinfI	GANTC	2 cut(s)	108, 156
HpaII	CCGG	2 cut(s)	125, 200
HphI	GGTGA	3 cut(s)	74, 303, 426
Hpy166II	GTNNAC	2 cut(s)	239, 311
Hpy188I	TCNGA	2 cut(s)	59, 132
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	2 cut(s)	239, 311
Hpy99I	CGWCG	1 cut(s)	237
HpyAV	CCTTC	1 cut(s)	336
HpyCH4III	ACNGT	5 cut(s)	68, 142, 372, 386, 472
HpyCH4IV	ACGT	2 cut(s)	34, 232
HpyCH4V	TGCA	2 cut(s)	257, 277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 350, 359
HpyF3I	CTNAG	2 cut(s)	102, 298
HpySE526I	ACGT	2 cut(s)	34, 232
Hsp92I	GRCGYC	3 cut(s)	21, 85, 232
Hsp92II	CATG	3 cut(s)	115, 124, 189
HspAI	GCGC	2 cut(s)	21, 85
KasI	GGCGCC	2 cut(s)	20, 84
KspI	CCGCGG	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	328, 349
LpnPI	CCDG	9 cut(s)	37, 81, 114, 138, 213, 254, 281, 303, 327
Lsp1109I	GCAGC	1 cut(s)	289
MaeI	CTAG	2 cut(s)	306, 438
MaeII	ACGT	2 cut(s)	34, 232
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	1 cut(s)	119
MbiI	CCGCTC	1 cut(s)	344
MboI	GATC	1 cut(s)	117
MboII	GAAGA	2 cut(s)	127, 156
MhlI	GDGCHC	2 cut(s)	325, 368
Mly113I	GGCGCC	2 cut(s)	21, 85
MlyI	GAGTC	1 cut(s)	150
MmeI	TCCRAC	2 cut(s)	359, 429
MseI	TTAA	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	2 cut(s)	125, 200
MspR9I	CCNGG	2 cut(s)	200, 269
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	2 cut(s)	75, 90
MwoI	GCNNNNNNNGC	3 cut(s)	84, 350, 359
NarI	GGCGCC	2 cut(s)	21, 85
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	3 cut(s)	115, 124, 189
NlaIV	GGNNCC	5 cut(s)	22, 86, 324, 418, 453
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	62
PagI	TCATGA	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	3 cut(s)	77, 89, 279
PleI	GAGTC	1 cut(s)	150
PluTI	GGCGCC	2 cut(s)	24, 88
PpsI	GAGTC	1 cut(s)	150
PshAI	GACNNNNGTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	267
PspEI	GGTNACC	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	5 cut(s)	22, 86, 324, 418, 453
PspPI	GGNCC	2 cut(s)	98, 239
SacII	CCGCGG	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	3 cut(s)	76, 88, 278
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	2 cut(s)	98, 239
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	2 cut(s)	200, 269
SduI	GDGCHC	2 cut(s)	325, 368
SetI	ASST	9 cut(s)	19, 37, 56, 64, 221, 235, 422, 439, 457
SfoI	GGCGCC	2 cut(s)	22, 86
Sfr303I	CCGCGG	1 cut(s)	91
SgrBI	CCGCGG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
SsiI	CCGC	7 cut(s)	75, 78, 88, 90, 265, 342, 362
SspDI	GGCGCC	2 cut(s)	20, 84
SspMI	CTAG	2 cut(s)	306, 438
StyD4I	CCNGG	2 cut(s)	198, 267
TaaI	ACNGT	5 cut(s)	68, 142, 372, 386, 472
TaiI	ACGT	2 cut(s)	37, 235
TaqI	TCGA	1 cut(s)	248
TaqII	GACCGA	1 cut(s)	256
TauI	GCSGC	2 cut(s)	78, 90
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	2 cut(s)	391, 475
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	128
TspRI	CASTG	2 cut(s)	391, 475
VpaK11BI	GGWCC	1 cut(s)	239
XspI	CTAG	2 cut(s)	306, 438
ZraI	GACGTC	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.