Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002801

Physical Location & Seq

Genomic Coordinates Forward (+)

66101763 .. 66103744

Gene Structure 1982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00387440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGAAGCGGGTCAATCAAATCGAACCCAACAGGGTCGAGGAAGAGGGTGGAGGCCACGGCGGAGGACTCGACGACTGGGCCTTCTCTCCTTCGGGGCAAAGATGGCAGTGCTTTTGCCAGATGCGATGGGTGCCAAAAGAATGTCCCAGTGGCGCTCATAAGCTTTCACAATTGTAGCCTCGATGCCAAAATCAAGACCAACCTGGAGGCTCAAGTCGTGGAAAAGCCCAGTGAAGTGACTAAGAAGCCTTCCACGGAGAGGAAGAAATCCAGTACATCATCACAACCAAATGCCAAGAGAGCCAAGACTGACAAAGCAAAGAAGAGCAAGGATCCAAATGCACCCAAGCGCCCTCTCACTGCCTTCTTCCTATTCATGAATGATTTTAGGAAAGCCTACAAGGAAGCTAATCCTGATTCCAAGGGTGTTAAGATGGTCGCAAAGGAGGGTGGTGAAAAGTGGAAACTTATGACTGATGAGGAGAAGAAGCCTTATATGGACAAAGCTGCTGAGCTTAAAGATGAGTACAAAAAGACCTTAGAGACTGAAGCTGATGATGCTGAAGGTGAAGCTGAAGATGTTTCAGAAAAGGAAGCTTCAGAGAAGGAAGTAGAGGAAGCTTCAGAAAAGGAAGCACCAGAGAAGGAAGTGGAGGAAGCATCAGATGGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

225

Amino Acids

24.7

Weight (kDa)

5.64

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	113 - 182	1.6e-13	HMG-box domain
HMG_box	PF00505	116 - 180	6e-19	HMG (high mobility group) box
HMG_WDHD1	PF24815	119 - 169	1e-14	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23420 AT5G23420
fragaria_vesca	FvH4_4g14340 FvH4_4g25270 FvH4_4g37280 FvH4_5g24080 FvH4_7g08880
malus_domestica	MD00G1127400.v1.1 MD13G1001900.v1.1
prunus_persica	Prupe.1G350700_v2.0.a1
pyrus_communis	pycom13g00150 pycom16g00050
rosa_chinensis	RchiOBHm_Chr4g0447101
rosa_laevigata	RLG00000005605 RLG00000017187 RLG00000019927 RLG00000024815
rosa_multiflora	Rmu_co7979696.1_g000001 Rmu_sc0010825.1_g000009 Rmu_ssc0000178.1_g000012
rosa_roxburghii	Rroxscaffold_2G00150280 Rroxscaffold_5G00357540 Rroxscaffold_5G00387440
rosa_rugosa	Rorug02G0403700 Rorug04G0378200 Rorug07G0307000
rosa_samantha	Rh1BG046400 Rh2AG305400 Rh2BG280600 Rh2DG275400 Rh2DG329200 Rh4AG439300 Rh4BG448400 Rh4CG465400 Rh4DG446800 Rh5BG556800 Rh5CG579600 Rh7DG482600
rosa_wichuraiana	Rw4G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	132
AciI	CCGC	2 cut(s)	9, 62
AclWI	GGATC	2 cut(s)	329, 342
AcuI	CTGAAG	5 cut(s)	570, 585, 585, 597, 609
AfaI	GTAC	2 cut(s)	277, 530
AfiI	CCNNNNNNNGG	1 cut(s)	261
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	8 cut(s)	165, 410, 509, 517, 554, 575, 599, 623
AluI	AGCT	8 cut(s)	165, 410, 509, 517, 554, 575, 599, 623
Alw26I	GTCTC	1 cut(s)	539
AlwI	GGATC	2 cut(s)	329, 342
AoxI	GGCC	2 cut(s)	54, 80
ApeKI	GCWGC	1 cut(s)	509
AspLEI	GCGC	2 cut(s)	157, 354
AspS9I	GGNCC	1 cut(s)	80
AsuHPI	GGTGA	2 cut(s)	467, 581
BamHI	GGATCC	1 cut(s)	334
BanI	GGYRCC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	496
BccI	CCATC	4 cut(s)	98, 122, 430, 662
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	206
BcoDI	GTCTC	1 cut(s)	539
BfoI	RGCGCY	2 cut(s)	158, 355
BisI	GCNGC	1 cut(s)	510
BlpI	GCTNAGC	1 cut(s)	513
BlsI	GCNGC	1 cut(s)	511
Bme1390I	CCNGG	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	2 cut(s)	134, 336
BmrFI	CCNGG	1 cut(s)	206
BmrI	ACTGGG	3 cut(s)	87, 143, 225
BmsI	GCATC	4 cut(s)	113, 175, 550, 671
BmuI	ACTGGG	3 cut(s)	87, 143, 225
BpmI	CTGGAG	1 cut(s)	227
Bpu1102I	GCTNAGC	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	198
BsaJI	CCNNGG	3 cut(s)	57, 255, 423
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse1I	ACTGG	4 cut(s)	82, 149, 231, 273
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	3 cut(s)	57, 255, 423
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	4 cut(s)	82, 149, 231, 273
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	1 cut(s)	496
BshFI	GGCC	2 cut(s)	56, 82
BshNI	GGYRCC	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	1 cut(s)	539
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	56, 82
Bsp143I	GATC	1 cut(s)	334
Bsp1720I	GCTNAGC	1 cut(s)	513
BspACI	CCGC	2 cut(s)	9, 62
BspANI	GGCC	2 cut(s)	56, 82
BspCNI	CTCAG	1 cut(s)	505
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	2 cut(s)	134, 336
BspPI	GGATC	2 cut(s)	329, 342
BspQI	GCTCTTC	1 cut(s)	320
BspT107I	GGYRCC	1 cut(s)	132
BsrI	ACTGG	4 cut(s)	82, 149, 231, 273
BssECI	CCNNGG	3 cut(s)	57, 255, 423
BssMI	GATC	1 cut(s)	334
BssT1I	CCWWGG	1 cut(s)	423
Bst2UI	CCWGG	1 cut(s)	206
Bst6I	CTCTTC	2 cut(s)	38, 320
BstDEI	CTNAG	3 cut(s)	243, 513, 541
BstDSI	CCRYGG	2 cut(s)	57, 255
BstH2I	RGCGCY	2 cut(s)	158, 355
BstHHI	GCGC	2 cut(s)	157, 354
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 132, 302, 560
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	496
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	2 cut(s)	56, 82
BtgI	CCRYGG	2 cut(s)	57, 255
BtgZI	GCGATG	1 cut(s)	141
BtsI	GCAGTG	2 cut(s)	115, 360
BtsIMutI	CAGTG	4 cut(s)	115, 156, 238, 360
CciI	TCATGA	1 cut(s)	378
CfoI	GCGC	2 cut(s)	157, 354
Cfr13I	GGNCC	1 cut(s)	80
Csp6I	GTAC	2 cut(s)	276, 529
CviAII	CATG	1 cut(s)	379
CviQI	GTAC	2 cut(s)	276, 529
DdeI	CTNAG	3 cut(s)	243, 513, 541
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
Eam1104I	CTCTTC	2 cut(s)	38, 320
EarI	CTCTTC	2 cut(s)	38, 320
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	423
Eco57I	CTGAAG	5 cut(s)	570, 585, 585, 597, 609
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	1 cut(s)	382
FaiI	YATR	5 cut(s)	161, 380, 473, 498, 500
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	1 cut(s)	378
FauI	CCCGC	1 cut(s)	2
Fnu4HI	GCNGC	1 cut(s)	510
Fsp4HI	GCNGC	1 cut(s)	510
GlaI	GCGC	2 cut(s)	156, 353
GluI	GCNGC	1 cut(s)	510
GsuI	CTGGAG	1 cut(s)	227
HaeII	RGCGCY	2 cut(s)	158, 355
HaeIII	GGCC	2 cut(s)	56, 82
HhaI	GCGC	2 cut(s)	157, 354
Hin1II	CATG	1 cut(s)	382
Hin6I	GCGC	2 cut(s)	155, 352
HinP1I	GCGC	2 cut(s)	155, 352
HindIII	AAGCTT	3 cut(s)	163, 597, 621
HinfI	GANTC	2 cut(s)	68, 419
HphI	GGTGA	2 cut(s)	467, 581
Hpy188I	TCNGA	4 cut(s)	589, 604, 628, 667
Hpy188III	TCNNGA	3 cut(s)	196, 379, 416
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	7 cut(s)	93, 101, 261, 376, 560, 601, 640
HpyCH4V	TGCA	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 132, 302, 560
HpyF3I	CTNAG	3 cut(s)	243, 513, 541
Hsp92II	CATG	1 cut(s)	382
HspAI	GCGC	2 cut(s)	155, 352
Kzo9I	GATC	1 cut(s)	334
LguI	GCTCTTC	1 cut(s)	320
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	4 cut(s)	113, 175, 550, 671
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	6 cut(s)	55, 277, 337, 361, 499, 590
MfeI	CAATTG	1 cut(s)	172
MflI	RGATCY	1 cut(s)	334
MluCI	AATT	1 cut(s)	172
MlyI	GAGTC	1 cut(s)	62
MseI	TTAA	2 cut(s)	432, 519
MspR9I	CCNGG	1 cut(s)	206
MunI	CAATTG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	4 cut(s)	105, 132, 302, 560
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	2 cut(s)	134, 336
NmuCI	GTSAC	1 cut(s)	238
PagI	TCATGA	1 cut(s)	378
PciSI	GCTCTTC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	419
PkrI	GCNGC	1 cut(s)	511
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	134, 336
PspPI	GGNCC	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	2 cut(s)	277, 530
RsaNI	GTAC	2 cut(s)	276, 529
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	432, 519
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	1 cut(s)	334
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	206
SfaNI	GCATC	4 cut(s)	113, 175, 550, 671
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	2 cut(s)	9, 62
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	423
TaqI	TCGA	4 cut(s)	23, 38, 71, 183
TasI	AATT	1 cut(s)	172
TatI	WGTACW	2 cut(s)	275, 528
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	432, 519
Tru9I	TTAA	2 cut(s)	432, 519
TscAI	CASTG	4 cut(s)	115, 156, 238, 367
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	367, 395
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	4 cut(s)	115, 156, 238, 367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.