AT5G23590

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002514
Physical Location & Seq
Reverse (-)
7953529 .. 7956875
3347 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G23590.2

Sequence Viewer

Length: 891 bp
ATGGAGGGTTTTGTCGATCACTACATTGTTCTAGGTTTAGCTTCTGGAGAGGAAGCTCTGAAGCTTACCGAGAAGGAGATTGCAAAAGCATACAAGTTGAAAGCTTTGGACTTGCATCCTGATAAACGCCCTGATGATCCTGATGCCCATGAGAAATTTCAGAGGCTTAAGACATCTTACGAGGTTCTCAAAGACGAGAAAGCCCGGAAGCTGTTTGATGATCTTCTTAGAATCCAGCGTGAGAAACAACATAAGAAATCGCAAGTAGATTCCAAGAGGCGTAAGATGATGTCAGATCTGGAGGAAAGGGAGCGTTCTGCTTTTTCTCCTAATCCTTCCGCTAGAGCTTATGATGAAGAAGAGAGAATCGCTAGGAAGCTTAAGGAGGAGATAGATAGGATACGTGCAAGACATGCGAAGAAGAAAAGTGGTTTCCAAACTCCAGAGAGTAATGTAGATGAAAAGAGAAAAGAAGAAAGAAGTGGTGCTGGAGCTAGTGTTCAACTCGATAAAGAGAGAATGTTGAAGGTTTCTTGGGAAAAAAGTGGTGAAGGGTATACAGCTGGAAGGCTAAGAGAAGTGTTTTCTGAGTTTGGTGAGGTTGAAGATGTTGTTATTAGGAGTACCAAGAAGAAATGTTCTGCTCTTATTGTAATGGCTACAAAGGATGGAGCTGTTGCAGCGACGAGGACATTGTGTGGCAATCTTTCTAATCCATTGTTGGTTGTACCTCTTCAGAAAGCAGCCCAAACTGATTTTCTGACGGCTAAGAAATCTGCAGAAGCAGAACCGCAGAGTAACATAGTAGGTGCCGGTCTTCAAGCTTATGAAGATGCCGTCATGCAAAGACTGCTACAGGCGGCTATGGACCAGAAAAAGCGAGGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

296

Amino Acids

33.49

Weight (kDa)

9.21

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 6 - 73 2.3e-16 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 809
AccI GTMKAC 1 cut(s) 557
AciI CCGC 3 cut(s) 339, 791, 860
AclWI GGATC 1 cut(s) 131
AcsI RAATTY 1 cut(s) 155
AcuI CTGAAG 2 cut(s) 80, 719
AfaI GTAC 2 cut(s) 625, 729
AflII CTTAAG 2 cut(s) 167, 380
AgsI TTSAA 5 cut(s) 100, 503, 526, 605, 821
AjuI GAANNNNNNNTTGG 2 cut(s) 741, 773
AloI GAACNNNNNNTCC 2 cut(s) 483, 515
AlwI GGATC 1 cut(s) 131
ApeKI GCWGC 2 cut(s) 680, 743
ApoI RAATTY 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 868
AsuC2I CCSGG 1 cut(s) 205
AsuHPI GGTGA 2 cut(s) 560, 608
AvaII GGWCC 1 cut(s) 868
BanI GGYRCC 1 cut(s) 809
BbsI GAAGAC 1 cut(s) 809
BbvI GCAGC 2 cut(s) 692, 755
BccI CCATC 1 cut(s) 662
BceAI ACGGC 2 cut(s) 780, 821
BciVI GTATCC 1 cut(s) 393
BcnI CCSGG 1 cut(s) 205
BfaI CTAG 4 cut(s) 32, 342, 372, 495
BfmI CTRYAG 2 cut(s) 777, 854
BfrI CTTAAG 2 cut(s) 167, 380
BfuI GTATCC 1 cut(s) 393
BglII AGATCT 1 cut(s) 295
BisI GCNGC 3 cut(s) 681, 744, 861
BlsI GCNGC 3 cut(s) 682, 745, 862
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 868
BmgT120I GGNCC 1 cut(s) 868
BmiI GGNNCC 1 cut(s) 811
BmrFI CCNGG 1 cut(s) 205
BmsI GCATC 3 cut(s) 124, 133, 823
BpiI GAAGAC 1 cut(s) 809
BpmI CTGGAG 4 cut(s) 66, 320, 426, 510
BpuMI CCSGG 1 cut(s) 205
BsaAI YACGTR 1 cut(s) 404
BsaXI ACNNNNNCTCC 2 cut(s) 483, 513
Bse118I RCCGGY 1 cut(s) 812
BseGI GGATG 2 cut(s) 115, 673
BseMII CTCAG 1 cut(s) 579
BseRI GAGGAG 1 cut(s) 401
BseXI GCAGC 2 cut(s) 692, 755
BshNI GGYRCC 1 cut(s) 809
BsiSI CCGG 2 cut(s) 205, 813
Bsp143I GATC 4 cut(s) 16, 136, 220, 295
BspACI CCGC 3 cut(s) 339, 791, 860
BspCNI CTCAG 1 cut(s) 580
BspLI GGNNCC 1 cut(s) 811
BspMAI CTGCAG 1 cut(s) 781
BspPI GGATC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 809
BspTI CTTAAG 2 cut(s) 167, 380
BsrFI RCCGGY 1 cut(s) 812
BssAI RCCGGY 1 cut(s) 812
BssMI GATC 4 cut(s) 16, 136, 220, 295
BssNAI GTATAC 1 cut(s) 558
Bst1107I GTATAC 1 cut(s) 558
Bst6I CTCTTC 2 cut(s) 354, 738
BstAFI CTTAAG 2 cut(s) 167, 380
BstAPI GCANNNNNTGC 2 cut(s) 413, 850
BstBAI YACGTR 1 cut(s) 404
BstDEI CTNAG 4 cut(s) 227, 572, 588, 768
BstF5I GGATG 2 cut(s) 115, 673
BstKTI GATC 4 cut(s) 19, 139, 223, 298
BstMBI GATC 4 cut(s) 16, 136, 220, 295
BstMWI GCNNNNNNNGC 3 cut(s) 413, 680, 850
BstNSI RCATGY 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 203
BstSFI CTRYAG 2 cut(s) 777, 854
BstV1I GCAGC 2 cut(s) 692, 755
BstV2I GAAGAC 1 cut(s) 809
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BstZ17I GTATAC 1 cut(s) 558
BsuI GTATCC 1 cut(s) 393
BtsCI GGATG 2 cut(s) 115, 673
Cfr10I RCCGGY 1 cut(s) 812
Cfr13I GGNCC 1 cut(s) 868
Csp6I GTAC 2 cut(s) 624, 728
CviAII CATG 3 cut(s) 149, 413, 841
CviQI GTAC 2 cut(s) 624, 728
DdeI CTNAG 4 cut(s) 227, 572, 588, 768
DpnI GATC 4 cut(s) 18, 138, 222, 297
DpnII GATC 4 cut(s) 16, 136, 220, 295
Eam1104I CTCTTC 2 cut(s) 354, 738
EarI CTCTTC 2 cut(s) 354, 738
Eco47I GGWCC 1 cut(s) 868
Eco57I CTGAAG 2 cut(s) 80, 719
FaeI CATG 3 cut(s) 152, 416, 844
FatI CATG 3 cut(s) 148, 412, 840
FblI GTMKAC 1 cut(s) 557
Fnu4HI GCNGC 3 cut(s) 681, 744, 861
FokI GGATG 2 cut(s) 102, 680
Fsp4HI GCNGC 3 cut(s) 681, 744, 861
FspBI CTAG 4 cut(s) 32, 342, 372, 495
GluI GCNGC 3 cut(s) 681, 744, 861
GsuI CTGGAG 4 cut(s) 66, 320, 426, 510
HapII CCGG 2 cut(s) 205, 813
Hin1II CATG 3 cut(s) 152, 416, 844
HindIII AAGCTT 4 cut(s) 62, 102, 377, 822
HinfI GANTC 3 cut(s) 231, 269, 366
HpaII CCGG 2 cut(s) 205, 813
HphI GGTGA 2 cut(s) 560, 608
Hpy166II GTNNAC 1 cut(s) 558
Hpy188I TCNGA 6 cut(s) 60, 162, 295, 589, 738, 762
Hpy188III TCNNGA 5 cut(s) 45, 119, 140, 299, 443
Hpy8I GTNNAC 1 cut(s) 558
Hpy99I CGWCG 1 cut(s) 688
HpyAV CCTTC 5 cut(s) 67, 345, 520, 545, 561
HpyCH4IV ACGT 1 cut(s) 403
HpyCH4V TGCA 6 cut(s) 83, 115, 407, 680, 779, 844
HpyF10VI GCNNNNNNNGC 3 cut(s) 413, 680, 850
HpyF3I CTNAG 4 cut(s) 227, 572, 588, 768
HpySE526I ACGT 1 cut(s) 403
Hsp92II CATG 3 cut(s) 152, 416, 844
Kzo9I GATC 4 cut(s) 16, 136, 220, 295
LmnI GCTCC 3 cut(s) 310, 491, 671
Lsp1109I GCAGC 2 cut(s) 692, 755
LweI GCATC 3 cut(s) 124, 133, 823
MaeI CTAG 4 cut(s) 32, 342, 372, 495
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 1 cut(s) 797
MalI GATC 4 cut(s) 18, 138, 222, 297
MboI GATC 4 cut(s) 16, 136, 220, 295
MflI RGATCY 1 cut(s) 295
MluCI AATT 1 cut(s) 155
MseI TTAA 3 cut(s) 168, 381, 889
MspA1I CMGCKG 1 cut(s) 563
MspCI CTTAAG 2 cut(s) 167, 380
MspI CCGG 2 cut(s) 205, 813
MspR9I CCNGG 1 cut(s) 205
MwoI GCNNNNNNNGC 3 cut(s) 413, 680, 850
NciI CCSGG 1 cut(s) 205
NdeII GATC 4 cut(s) 16, 136, 220, 295
NlaIII CATG 3 cut(s) 152, 416, 844
NlaIV GGNNCC 1 cut(s) 811
NspI RCATGY 1 cut(s) 416
PfeI GAWTC 3 cut(s) 231, 269, 366
PkrI GCNGC 3 cut(s) 682, 745, 862
Ppu21I YACGTR 1 cut(s) 404
PspN4I GGNNCC 1 cut(s) 811
PspPI GGNCC 1 cut(s) 868
PstI CTGCAG 1 cut(s) 781
PsuI RGATCY 1 cut(s) 295
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 2 cut(s) 625, 729
RsaNI GTAC 2 cut(s) 624, 728
SaqAI TTAA 3 cut(s) 168, 381, 889
SatI GCNGC 3 cut(s) 681, 744, 861
Sau3AI GATC 4 cut(s) 16, 136, 220, 295
Sau96I GGNCC 1 cut(s) 868
ScrFI CCNGG 1 cut(s) 205
SfaNI GCATC 3 cut(s) 124, 133, 823
SfcI CTRYAG 2 cut(s) 777, 854
SinI GGWCC 1 cut(s) 868
SmlI CTYRAG 2 cut(s) 167, 380
SmoI CTYRAG 2 cut(s) 167, 380
Sse9I AATT 1 cut(s) 155
SsiI CCGC 3 cut(s) 339, 791, 860
SspMI CTAG 4 cut(s) 32, 342, 372, 495
StyD4I CCNGG 1 cut(s) 203
TaiI ACGT 1 cut(s) 406
TaqI TCGA 2 cut(s) 15, 507
TasI AATT 1 cut(s) 155
TauI GCSGC 1 cut(s) 863
TfiI GAWTC 3 cut(s) 231, 269, 366
Tru1I TTAA 3 cut(s) 168, 381, 889
Tru9I TTAA 3 cut(s) 168, 381, 889
TseI GCWGC 2 cut(s) 680, 743
TspDTI ATGAA 3 cut(s) 369, 474, 843
Vha464I CTTAAG 2 cut(s) 167, 380
VpaK11BI GGWCC 1 cut(s) 868
XapI RAATTY 1 cut(s) 155
XceI RCATGY 1 cut(s) 416
XmiI GTMKAC 1 cut(s) 557
XspI CTAG 4 cut(s) 32, 342, 372, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.