pycom05g11900

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0002514
Physical Location & Seq
Forward (+)
15433708 .. 15434492
785 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g11900.1

Sequence Viewer

Length: 693 bp
ATGTCATCCTATGAGATACTCAAGGATGAGAAGGCCAGGAAATTGTTTGATGATTTACTCCGAGTTAAGAGGGACCAGCAGCGCCGCCATTTGGAGCGCGATGCCAAGCGACAAAGGATGGTCTCTGATCTTGAAGCAAGAGAACGATCTGCCTTTGCTCCGGATGCGGCTGCCAGAGATAGAGCAGAAGAGGAGAGAATCGCTAGGAAGCTTAAAGAAGAGATTGAGAGAATACGCAAAAAGCATGCGAAGAAAGGGGCGGCAACTGCTGCTGCTCCTAAGAGAGAGACTGGTGGAGTTGGCCAGGAAAATGCGGGTGGTGCGAAGATGGGGTTGGATGAGGAGAAGATGCTTAAAGTTTCATGGGAAAATGTTGGTGAAGGTTATACGGCAGAGAGGTTGAGAGGTATTTTCTCGGAGTTCGGCGAGGTTGAAGATATTGTCATCAGGGGCAAGAAGAAGAGAGGTTCGGCTCTTGTTGTGATGGCGACTAAAGATGCAGCTGTTGCTGCAACAGGAACTCTGTTAGGTGATCGATCTAATCCATTGCTGGTTATACCTCTTAAACCAGTTTCAGTGACTGATGCTCCACCGGTTCAGAGGCCTGAGGAGCCAGATCGACTTAATAATTTGGTTGGGGCTGGATATCAATCATTTGAAGATTCTGTTTTGGAGAAACTCAAAAAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

231

Amino Acids

25.63

Weight (kDa)

9.47

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 124 - 173 2.9e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 99
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 4 cut(s) 85, 167, 260, 314
AcoI YGGCCR 1 cut(s) 301
AfiI CCNNNNNNNGG 1 cut(s) 91
AgeI ACCGGT 1 cut(s) 592
AgsI TTSAA 3 cut(s) 134, 434, 659
AjnI CCWGG 2 cut(s) 35, 303
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AluBI AGCT 2 cut(s) 211, 503
AluI AGCT 2 cut(s) 211, 503
Alw26I GTCTC 2 cut(s) 127, 281
AlwNI CAGNNNCTG 1 cut(s) 581
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 3 cut(s) 33, 301, 602
ApeKI GCWGC 6 cut(s) 79, 170, 269, 272, 500, 509
AsiGI ACCGGT 1 cut(s) 592
AspLEI GCGC 2 cut(s) 84, 99
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 389, 542
AvaII GGWCC 1 cut(s) 73
AxyI CCTNAGG 1 cut(s) 606
BalI TGGCCA 1 cut(s) 303
BbvI GCAGC 6 cut(s) 91, 157, 256, 259, 496, 512
BccI CCATC 3 cut(s) 112, 322, 478
BceAI ACGGC 1 cut(s) 405
BciT130I CCWGG 2 cut(s) 37, 305
BcoDI GTCTC 2 cut(s) 127, 281
BfaI CTAG 1 cut(s) 204
BfoI RGCGCY 1 cut(s) 85
BisI GCNGC 9 cut(s) 80, 85, 168, 171, 261, 270, 273, 501, 510
BlsI GCNGC 9 cut(s) 81, 86, 169, 172, 262, 271, 274, 502, 511
Bme1390I CCNGG 2 cut(s) 37, 305
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 2 cut(s) 74, 612
BmrFI CCNGG 2 cut(s) 37, 305
BmsI GCATC 5 cut(s) 91, 154, 339, 487, 574
BpuEI CTTGAG 1 cut(s) 5
Bsa29I ATCGAT 1 cut(s) 535
BsaBI GATNNNNATC 1 cut(s) 649
BsaI GGTCTC 1 cut(s) 127
BsaWI WCCGGW 2 cut(s) 160, 592
BsaXI ACNNNNNCTCC 2 cut(s) 571, 601
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse118I RCCGGY 1 cut(s) 592
Bse1I ACTGG 2 cut(s) 295, 569
Bse21I CCTNAGG 1 cut(s) 606
Bse3DI GCAATG 1 cut(s) 545
Bse8I GATNNNNATC 1 cut(s) 649
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 2 cut(s) 37, 305
BseCI ATCGAT 1 cut(s) 535
BseGI GGATG 5 cut(s) 5, 31, 123, 169, 343
BseJI GATNNNNATC 1 cut(s) 649
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 545
BseMII CTCAG 1 cut(s) 597
BseNI ACTGG 2 cut(s) 295, 569
BseRI GAGGAG 3 cut(s) 206, 356, 623
BseXI GCAGC 6 cut(s) 91, 157, 256, 259, 496, 512
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 3 cut(s) 35, 303, 604
BshTI ACCGGT 1 cut(s) 592
BshVI ATCGAT 1 cut(s) 535
BsiSI CCGG 2 cut(s) 161, 593
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 2 cut(s) 127, 281
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 3 cut(s) 35, 303, 604
Bso31I GGTCTC 1 cut(s) 127
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 5 cut(s) 127, 146, 532, 536, 616
BspACI CCGC 4 cut(s) 85, 167, 260, 314
BspANI GGCC 3 cut(s) 35, 303, 604
BspCNI CTCAG 1 cut(s) 598
BspDI ATCGAT 1 cut(s) 535
BspEI TCCGGA 1 cut(s) 160
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 74, 612
BspTNI GGTCTC 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 545
BsrFI RCCGGY 1 cut(s) 592
BsrI ACTGG 2 cut(s) 295, 569
BssAI RCCGGY 1 cut(s) 592
BssMI GATC 5 cut(s) 127, 146, 532, 536, 616
Bst2UI CCWGG 2 cut(s) 37, 305
Bst6I CTCTTC 3 cut(s) 183, 213, 455
BstAPI GCANNNNNTGC 2 cut(s) 269, 506
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 2 cut(s) 279, 606
BstF5I GGATG 5 cut(s) 5, 31, 123, 169, 343
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 2 cut(s) 84, 99
BstKTI GATC 5 cut(s) 130, 149, 535, 539, 619
BstMAI GTCTC 2 cut(s) 127, 281
BstMBI GATC 5 cut(s) 127, 146, 532, 536, 616
BstMWI GCNNNNNNNGC 7 cut(s) 164, 266, 269, 320, 506, 509, 610
BstNI CCWGG 2 cut(s) 37, 305
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 2 cut(s) 35, 303
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 6 cut(s) 91, 157, 256, 259, 496, 512
Bsu15I ATCGAT 1 cut(s) 535
Bsu36I CCTNAGG 1 cut(s) 606
BsuRI GGCC 3 cut(s) 35, 303, 604
BsuTUI ATCGAT 1 cut(s) 535
BtgZI GCGATG 1 cut(s) 114
BtsCI GGATG 5 cut(s) 5, 31, 123, 169, 343
BtsIMutI CAGTG 1 cut(s) 582
Cac8I GCNNGC 1 cut(s) 246
CaiI CAGNNNCTG 1 cut(s) 581
CfoI GCGC 2 cut(s) 84, 99
Cfr10I RCCGGY 1 cut(s) 592
Cfr13I GGNCC 1 cut(s) 73
ClaI ATCGAT 1 cut(s) 535
CspAI ACCGGT 1 cut(s) 592
CviAII CATG 2 cut(s) 245, 363
CviJI RGCY 9 cut(s) 35, 170, 211, 303, 473, 503, 604, 613, 641
CviKI_1 RGCY 9 cut(s) 35, 170, 211, 303, 473, 503, 604, 613, 641
DdeI CTNAG 2 cut(s) 279, 606
DpnI GATC 5 cut(s) 129, 148, 534, 538, 618
DpnII GATC 5 cut(s) 127, 146, 532, 536, 616
EaeI YGGCCR 1 cut(s) 301
Eam1104I CTCTTC 3 cut(s) 183, 213, 455
EarI CTCTTC 3 cut(s) 183, 213, 455
Eco147I AGGCCT 1 cut(s) 604
Eco31I GGTCTC 1 cut(s) 127
Eco32I GATATC 1 cut(s) 647
Eco47I GGWCC 1 cut(s) 73
Eco81I CCTNAGG 1 cut(s) 606
EcoRII CCWGG 2 cut(s) 35, 303
EcoRV GATATC 1 cut(s) 647
FaeI CATG 2 cut(s) 248, 366
FaiI YATR 5 cut(s) 12, 246, 364, 387, 557
FaqI GGGAC 1 cut(s) 86
FatI CATG 2 cut(s) 244, 362
FauI CCCGC 1 cut(s) 307
Fnu4HI GCNGC 9 cut(s) 80, 85, 168, 171, 261, 270, 273, 501, 510
FokI GGATG 4 cut(s) 38, 130, 176, 350
Fsp4HI GCNGC 9 cut(s) 80, 85, 168, 171, 261, 270, 273, 501, 510
FspBI CTAG 1 cut(s) 204
GlaI GCGC 2 cut(s) 83, 98
GluI GCNGC 9 cut(s) 80, 85, 168, 171, 261, 270, 273, 501, 510
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 3 cut(s) 35, 303, 604
HapII CCGG 2 cut(s) 161, 593
HhaI GCGC 2 cut(s) 84, 99
Hin1II CATG 2 cut(s) 248, 366
Hin6I GCGC 2 cut(s) 82, 97
HinP1I GCGC 2 cut(s) 82, 97
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 2 cut(s) 198, 662
HpaII CCGG 2 cut(s) 161, 593
HphI GGTGA 2 cut(s) 389, 542
Hpy188I TCNGA 4 cut(s) 62, 127, 418, 600
Hpy188III TCNNGA 2 cut(s) 131, 161
HpyAV CCTTC 2 cut(s) 25, 374
HpyCH4V TGCA 2 cut(s) 500, 512
HpyF10VI GCNNNNNNNGC 7 cut(s) 164, 266, 269, 320, 506, 509, 610
HpyF3I CTNAG 2 cut(s) 279, 606
Hsp92II CATG 2 cut(s) 248, 366
HspAI GCGC 2 cut(s) 82, 97
Kpn2I TCCGGA 1 cut(s) 160
Kzo9I GATC 5 cut(s) 127, 146, 532, 536, 616
LmnI GCTCC 5 cut(s) 94, 163, 280, 592, 610
Lsp1109I GCAGC 6 cut(s) 91, 157, 256, 259, 496, 512
LweI GCATC 5 cut(s) 91, 154, 339, 487, 574
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 577
MalI GATC 5 cut(s) 129, 148, 534, 538, 618
MboI GATC 5 cut(s) 127, 146, 532, 536, 616
MboII GAAGA 9 cut(s) 200, 230, 262, 337, 358, 446, 469, 472, 671
MlsI TGGCCA 1 cut(s) 303
MluCI AATT 2 cut(s) 41, 628
MluNI TGGCCA 1 cut(s) 303
MmeI TCCRAC 1 cut(s) 315
Mox20I TGGCCA 1 cut(s) 303
MroI TCCGGA 1 cut(s) 160
MscI TGGCCA 1 cut(s) 303
MseI TTAA 5 cut(s) 66, 213, 354, 564, 624
Msp20I TGGCCA 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 2 cut(s) 161, 593
MspR9I CCNGG 2 cut(s) 37, 305
MvaI CCWGG 2 cut(s) 37, 305
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 7 cut(s) 164, 266, 269, 320, 506, 509, 610
NdeII GATC 5 cut(s) 127, 146, 532, 536, 616
NlaIII CATG 2 cut(s) 248, 366
NlaIV GGNNCC 2 cut(s) 74, 612
NmuCI GTSAC 1 cut(s) 577
NspI RCATGY 1 cut(s) 248
PaeI GCATGC 1 cut(s) 248
PceI AGGCCT 1 cut(s) 604
PfeI GAWTC 2 cut(s) 198, 662
PinAI ACCGGT 1 cut(s) 592
PkrI GCNGC 9 cut(s) 81, 86, 169, 172, 262, 271, 274, 502, 511
Psp6I CCWGG 2 cut(s) 35, 303
PspGI CCWGG 2 cut(s) 35, 303
PspN4I GGNNCC 2 cut(s) 74, 612
PspPI GGNCC 1 cut(s) 73
PstNI CAGNNNCTG 1 cut(s) 581
PvuII CAGCTG 1 cut(s) 503
SaqAI TTAA 5 cut(s) 66, 213, 354, 564, 624
SatI GCNGC 9 cut(s) 80, 85, 168, 171, 261, 270, 273, 501, 510
Sau3AI GATC 5 cut(s) 127, 146, 532, 536, 616
Sau96I GGNCC 1 cut(s) 73
ScrFI CCNGG 2 cut(s) 37, 305
SfaNI GCATC 5 cut(s) 91, 154, 339, 487, 574
SinI GGWCC 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
SphI GCATGC 1 cut(s) 248
Sse9I AATT 2 cut(s) 41, 628
SseBI AGGCCT 1 cut(s) 604
SsiI CCGC 4 cut(s) 85, 167, 260, 314
SspMI CTAG 1 cut(s) 204
StuI AGGCCT 1 cut(s) 604
StyD4I CCNGG 2 cut(s) 35, 303
TaqI TCGA 2 cut(s) 535, 619
TasI AATT 2 cut(s) 41, 628
TauI GCSGC 3 cut(s) 87, 170, 263
TfiI GAWTC 2 cut(s) 198, 662
Tru1I TTAA 5 cut(s) 66, 213, 354, 564, 624
Tru9I TTAA 5 cut(s) 66, 213, 354, 564, 624
TscAI CASTG 1 cut(s) 582
TseFI GTSAC 1 cut(s) 577
TseI GCWGC 6 cut(s) 79, 170, 269, 272, 500, 509
Tsp45I GTSAC 1 cut(s) 577
TspDTI ATGAA 1 cut(s) 351
TspRI CASTG 1 cut(s) 582
VpaK11BI GGWCC 1 cut(s) 73
XceI RCATGY 1 cut(s) 248
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.