Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004165.1

Orthogroup ID

OG0002514

Physical Location & Seq

Genomic Coordinates Reverse (-)

174033 .. 174470

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004165.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgcctcagaagagagagactggggaagttggaaagaaggtgaatggtggtgttgggataagcctgaggttagaagaagagaaggtgattagagtgtgttgggaaaagtttgggggtgaaggttatacagcaaaaaggttgagagacttgttgtccaagtttggtggagttaaagacctcatccttggttcaggttgtttggcgtcagttctgatggagactagagatgcagttgttgccacaacagaagcggtaactggtgatctttctaatccgttgagggtttcactttttcaaccagttgcaccgaagaggacggtggctcttacagcagagaagtctgatggacctgatacagttaataatttgcttggggttggctttcgaacatttgaagatgatgttttaaagaaggttgcaaatgctgggcagaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

145

Amino Acids

15.56

Weight (kDa)

8.93

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23590 AT5G23590
fragaria_vesca	FvH4_2g15640 FvH4_2g15640 FvH4_2g15640 FvH4_5g36760
malus_domestica	MD05G1124900.v1.1
prunus_persica	Prupe.8G168900_v2.0.a1
pyrus_communis	pycom05g11900
rosa_chinensis	RchiOBHm_Chr6g0278841
rosa_laevigata	RLG00000000874 RLG00000000877 RLG00000013190
rosa_multiflora	Rmu_sc0004165.1_g000050 Rmu_sc0004380.1_g000008 Rmu_sc0007085.1_g000002 Rmu_sc0007085.1_g000005 Rmu_sc0024310.1_g000002 Rmu_sc0038395.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222310 Rroxscaffold_3G00222350 Rroxscaffold_3G00222370 Rroxscaffold_7G00189600
rosa_rugosa	Rorug06G0119500 Rorug06G0119600
rosa_samantha	Rh6AG228000 Rh6BG233700 Rh6CG236100 Rh6DG227300 Rh7AG472700 Rh7BG443000 Rh7CG489600 Rh7CG489700 Rh7CG489900 Rh7CG490000 Rh7DG458000 Rh7DG458100 Rh7DG458200 Rh7DG458300
rosa_wichuraiana	Rw6G020010 Rw7G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	296, 395
AhdI	GACNNNNNGTC	1 cut(s)	151
Alw26I	GTCTC	3 cut(s)	11, 138, 212
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	4 cut(s)	52, 97, 128, 272
AsuII	TTCGAA	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	347
AxyI	CCTNAGG	1 cut(s)	65
BccI	CCATC	2 cut(s)	208, 338
BcoDI	GTCTC	3 cut(s)	11, 138, 212
BfaI	CTAG	1 cut(s)	222
Bme18I	GGWCC	1 cut(s)	347
BmeRI	GACNNNNNGTC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	347
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	217
BmuI	ACTGGG	1 cut(s)	30
Bpu14I	TTCGAA	1 cut(s)	385
BsaHI	GRCGYC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	184
Bse1I	ACTGG	3 cut(s)	25, 262, 299
Bse21I	CCTNAGG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	180
BseMII	CTCAG	2 cut(s)	20, 56
BseNI	ACTGG	3 cut(s)	25, 262, 299
BseYI	CCCAGC	1 cut(s)	425
BsmAI	GTCTC	3 cut(s)	11, 138, 212
Bsp119I	TTCGAA	1 cut(s)	385
Bsp143I	GATC	1 cut(s)	262
BspACI	CCGC	1 cut(s)	251
BspCNI	CTCAG	2 cut(s)	19, 57
BspT104I	TTCGAA	1 cut(s)	385
BsrI	ACTGG	3 cut(s)	25, 262, 299
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	1 cut(s)	262
BssNI	GRCGYC	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	184
Bst4CI	ACNGT	2 cut(s)	319, 358
Bst6I	CTCTTC	3 cut(s)	5, 72, 305
BstACI	GRCGYC	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstBI	TTCGAA	1 cut(s)	385
BstDEI	CTNAG	2 cut(s)	6, 65
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	1 cut(s)	265
BstMAI	GTCTC	3 cut(s)	11, 138, 212
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 329
Bsu36I	CCTNAGG	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	347
CseI	GACGC	1 cut(s)	192
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviJI	RGCY	3 cut(s)	63, 323, 381
CviKI_1	RGCY	3 cut(s)	63, 323, 381
DdeI	CTNAG	2 cut(s)	6, 65
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
DraI	TTTAAA	1 cut(s)	408
DriI	GACNNNNNGTC	1 cut(s)	151
Eam1104I	CTCTTC	3 cut(s)	5, 72, 305
Eam1105I	GACNNNNNGTC	1 cut(s)	151
EarI	CTCTTC	3 cut(s)	5, 72, 305
Eco130I	CCWWGG	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	347
Eco81I	CCTNAGG	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FaiI	YATR	1 cut(s)	126
FokI	GGATG	1 cut(s)	167
FspBI	CTAG	1 cut(s)	222
GsaI	CCCAGC	1 cut(s)	429
HgaI	GACGC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	203
HphI	GGTGA	4 cut(s)	52, 97, 128, 272
Hpy188I	TCNGA	3 cut(s)	9, 213, 343
HpyAV	CCTTC	4 cut(s)	31, 76, 113, 406
HpyCH4III	ACNGT	2 cut(s)	319, 358
HpyCH4V	TGCA	3 cut(s)	230, 305, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 329
HpyF3I	CTNAG	2 cut(s)	6, 65
Hsp92I	GRCGYC	1 cut(s)	203
Kzo9I	GATC	1 cut(s)	262
LpnPI	CCDG	7 cut(s)	6, 77, 177, 243, 312, 363, 411
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MboII	GAAGA	5 cut(s)	22, 86, 89, 322, 407
MluCI	AATT	1 cut(s)	364
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	5 cut(s)	15, 60, 188, 273, 306
MseI	TTAA	3 cut(s)	171, 360, 407
MwoI	GCNNNNNNNGC	2 cut(s)	236, 329
NdeII	GATC	1 cut(s)	262
NspV	TTCGAA	1 cut(s)	385
PspFI	CCCAGC	1 cut(s)	425
PspPI	GGNCC	1 cut(s)	347
SaqAI	TTAA	3 cut(s)	171, 360, 407
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	1 cut(s)	347
SetI	ASST	9 cut(s)	42, 71, 87, 124, 140, 180, 196, 352, 417
SfaNI	GCATC	1 cut(s)	217
SfuI	TTCGAA	1 cut(s)	385
SinI	GGWCC	1 cut(s)	347
Sse9I	AATT	1 cut(s)	364
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	2 cut(s)	319, 358
TaqI	TCGA	1 cut(s)	385
TasI	AATT	1 cut(s)	364
Tru1I	TTAA	3 cut(s)	171, 360, 407
Tru9I	TTAA	3 cut(s)	171, 360, 407
TspGWI	ACGGA	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	347
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.