Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007085.1

Orthogroup ID

OG0002514

Physical Location & Seq

Genomic Coordinates Forward (+)

15692 .. 16556

Gene Structure 865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007085.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgaacaagactatagacgaagatcattataaggttcttggtttgccgtccggcgaggaaggctctaagctcacagagaaacagattacgaaggcttaccacgcaaaagctttggtgttgcaccctgacaagaggcctaaaagtgatctccaagccaataccaacttccaaaggctcaaaaaatcctatgaggttctcaagaatgaaagttcccgcaaagtgttcgaccaaatgcttagagatcaaagacagaaagatgggaaccattcggagcacgatcccaagcgacagaagatggtttctgatcttgaagcaagagaacgagctgcaaagtttgacagggatgccaaaaagagagagcctgggggagttgggaagaacgtgaatggtggtgttgggataagcctgaggttagaagaagagaaggtgattagagtgtgttgggaaaagtttgagggttgtttggctttggttctgatggagactagagatgcagctgttgccgcaacaggagaggtaattggtgatctttctaatccgttgagggtttcgctttttcaaccggtcgcaccgaagaggatggtggctccgacagctgagaagtctgatgaacctgatcaagttaataatttggttggggttggctttcgaacatttgaagatggaccttttaaagaaggttgcacaggctgggcagaagcaaaaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

236

Amino Acids

26.42

Weight (kDa)

8.63

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23590 AT5G23590
fragaria_vesca	FvH4_2g15640 FvH4_2g15640 FvH4_2g15640 FvH4_5g36760
malus_domestica	MD05G1124900.v1.1
prunus_persica	Prupe.8G168900_v2.0.a1
pyrus_communis	pycom05g11900
rosa_chinensis	RchiOBHm_Chr6g0278841
rosa_laevigata	RLG00000000874 RLG00000000877 RLG00000013190
rosa_multiflora	Rmu_sc0004165.1_g000050 Rmu_sc0004380.1_g000008 Rmu_sc0007085.1_g000002 Rmu_sc0007085.1_g000005 Rmu_sc0024310.1_g000002 Rmu_sc0038395.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222310 Rroxscaffold_3G00222350 Rroxscaffold_3G00222370 Rroxscaffold_7G00189600
rosa_rugosa	Rorug06G0119500 Rorug06G0119600
rosa_samantha	Rh6AG228000 Rh6BG233700 Rh6CG236100 Rh6DG227300 Rh7AG472700 Rh7BG443000 Rh7CG489600 Rh7CG489700 Rh7CG489900 Rh7CG490000 Rh7DG458000 Rh7DG458100 Rh7DG458200 Rh7DG458300
rosa_wichuraiana	Rw6G020010 Rw7G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	30
AciI	CCGC	2 cut(s)	214, 504
AclWI	GGATC	1 cut(s)	272
AgeI	ACCGGT	1 cut(s)	562
AgsI	TTSAA	3 cut(s)	311, 560, 659
AjnI	CCWGG	1 cut(s)	361
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	5 cut(s)	70, 110, 326, 497, 596
AluI	AGCT	5 cut(s)	70, 110, 326, 497, 596
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	1 cut(s)	476
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	2 cut(s)	326, 494
AsiGI	ACCGGT	1 cut(s)	562
AspS9I	GGNCC	1 cut(s)	665
AsuHPI	GGTGA	2 cut(s)	439, 536
AsuII	TTCGAA	1 cut(s)	649
AvaII	GGWCC	1 cut(s)	665
AxyI	CCTNAGG	1 cut(s)	407
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	313, 506
BccI	CCATC	5 cut(s)	251, 289, 472, 574, 656
BceAI	ACGGC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciT130I	CCWGG	1 cut(s)	363
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	3 cut(s)	327, 495, 504
BlsI	GCNGC	3 cut(s)	328, 496, 505
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	1 cut(s)	665
BmiI	GGNNCC	2 cut(s)	263, 588
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	2 cut(s)	334, 481
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
Bpu14I	TTCGAA	1 cut(s)	649
BpuEI	CTTGAG	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	362
BsaWI	WCCGGW	1 cut(s)	562
Bse118I	RCCGGY	1 cut(s)	562
Bse21I	CCTNAGG	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	2 cut(s)	349, 585
BseMII	CTCAG	2 cut(s)	398, 588
BseXI	GCAGC	2 cut(s)	313, 506
BseYI	CCCAGC	1 cut(s)	690
Bsh1285I	CGRYCG	1 cut(s)	567
BshFI	GGCC	1 cut(s)	136
BshTI	ACCGGT	1 cut(s)	562
BsiEI	CGRYCG	1 cut(s)	567
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	2 cut(s)	51, 563
BsmAI	GTCTC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	136
Bsp119I	TTCGAA	1 cut(s)	649
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	7 cut(s)	22, 145, 241, 277, 304, 526, 616
BspACI	CCGC	2 cut(s)	214, 504
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	2 cut(s)	399, 589
BspLI	GGNNCC	2 cut(s)	263, 588
BspPI	GGATC	1 cut(s)	272
BspT104I	TTCGAA	1 cut(s)	649
BsrFI	RCCGGY	1 cut(s)	562
BssAI	RCCGGY	1 cut(s)	562
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	7 cut(s)	22, 145, 241, 277, 304, 526, 616
Bst2UI	CCWGG	1 cut(s)	363
Bst6I	CTCTTC	2 cut(s)	414, 569
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstBI	TTCGAA	1 cut(s)	649
BstDEI	CTNAG	4 cut(s)	66, 236, 407, 597
BstF5I	GGATG	2 cut(s)	349, 585
BstKTI	GATC	7 cut(s)	25, 148, 244, 280, 307, 529, 619
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	7 cut(s)	22, 145, 241, 277, 304, 526, 616
BstMCI	CGRYCG	1 cut(s)	567
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 101, 500, 503, 593
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	2 cut(s)	313, 506
Bsu36I	CCTNAGG	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	349, 585
Cfr10I	RCCGGY	1 cut(s)	562
Cfr13I	GGNCC	1 cut(s)	665
CspAI	ACCGGT	1 cut(s)	562
DdeI	CTNAG	4 cut(s)	66, 236, 407, 597
DpnI	GATC	7 cut(s)	24, 147, 243, 279, 306, 528, 618
DpnII	GATC	7 cut(s)	22, 145, 241, 277, 304, 526, 616
DraI	TTTAAA	1 cut(s)	673
Eam1104I	CTCTTC	2 cut(s)	414, 569
EarI	CTCTTC	2 cut(s)	414, 569
Eco147I	AGGCCT	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	665
Eco81I	CCTNAGG	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	361
FaiI	YATR	3 cut(s)	14, 30, 189
FauI	CCCGC	1 cut(s)	221
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	3 cut(s)	327, 495, 504
FokI	GGATG	2 cut(s)	356, 592
Fsp4HI	GCNGC	3 cut(s)	327, 495, 504
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	3 cut(s)	327, 495, 504
GsaI	CCCAGC	1 cut(s)	694
HaeIII	GGCC	1 cut(s)	136
HapII	CCGG	2 cut(s)	51, 563
HindIII	AAGCTT	1 cut(s)	108
HpaII	CCGG	2 cut(s)	51, 563
HphI	GGTGA	2 cut(s)	439, 536
Hpy188I	TCNGA	5 cut(s)	271, 304, 477, 591, 607
Hpy188III	TCNNGA	2 cut(s)	199, 308
HpyAV	CCTTC	4 cut(s)	53, 85, 418, 671
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	4 cut(s)	121, 329, 494, 684
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 101, 500, 503, 593
HpyF3I	CTNAG	4 cut(s)	66, 236, 407, 597
HpySE526I	ACGT	1 cut(s)	381
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	7 cut(s)	22, 145, 241, 277, 304, 526, 616
LmnI	GCTCC	2 cut(s)	271, 592
Lsp1109I	GCAGC	2 cut(s)	313, 506
LweI	GCATC	2 cut(s)	334, 481
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	381
MalI	GATC	7 cut(s)	24, 147, 243, 279, 306, 528, 618
MboI	GATC	7 cut(s)	22, 145, 241, 277, 304, 526, 616
MboII	GAAGA	7 cut(s)	32, 304, 388, 428, 431, 586, 671
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	2 cut(s)	519, 628
MmeI	TCCRAC	1 cut(s)	614
MnlI	CCTC	8 cut(s)	49, 126, 184, 402, 448, 508, 537, 570
MseI	TTAA	2 cut(s)	624, 672
MspA1I	CMGCKG	2 cut(s)	497, 596
MspI	CCGG	2 cut(s)	51, 563
MspR9I	CCNGG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	5 cut(s)	60, 101, 500, 503, 593
NdeII	GATC	7 cut(s)	22, 145, 241, 277, 304, 526, 616
NlaIV	GGNNCC	2 cut(s)	263, 588
NspV	TTCGAA	1 cut(s)	649
PceI	AGGCCT	1 cut(s)	136
PinAI	ACCGGT	1 cut(s)	562
PkrI	GCNGC	3 cut(s)	328, 496, 505
PsiI	TTATAA	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	690
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	2 cut(s)	263, 588
PspPI	GGNCC	1 cut(s)	665
PvuII	CAGCTG	2 cut(s)	497, 596
SaqAI	TTAA	2 cut(s)	624, 672
SatI	GCNGC	3 cut(s)	327, 495, 504
Sau3AI	GATC	7 cut(s)	22, 145, 241, 277, 304, 526, 616
Sau96I	GGNCC	1 cut(s)	665
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	276
SfaNI	GCATC	2 cut(s)	334, 481
SfcI	CTRYAG	1 cut(s)	12
SfuI	TTCGAA	1 cut(s)	649
SinI	GGWCC	1 cut(s)	665
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	519, 628
SseBI	AGGCCT	1 cut(s)	136
SsiI	CCGC	2 cut(s)	214, 504
SspMI	CTAG	1 cut(s)	486
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	361
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	2 cut(s)	225, 649
TasI	AATT	2 cut(s)	519, 628
TauI	GCSGC	1 cut(s)	506
Tru1I	TTAA	2 cut(s)	624, 672
Tru9I	TTAA	2 cut(s)	624, 672
TseI	GCWGC	2 cut(s)	326, 494
TspDTI	ATGAA	3 cut(s)	17, 219, 624
TspGWI	ACGGA	1 cut(s)	528
VpaK11BI	GGWCC	1 cut(s)	665
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.