Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007085.1

Orthogroup ID

OG0002514

Physical Location & Seq

Genomic Coordinates Forward (+)

3343 .. 5486

Gene Structure 2144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007085.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atgtccggaaaagaaaagggtcatgcaatagggattgacttggggacaacttactcgtgcgtggcggtttggcagcacgaacatgtagaaatcatagtgaacgatcagggaaacaggactactccatcttatgttgccttcactgatactgagaaactgattggcgattcagcgtttaaccagatcatcaacaatcccaccaactccatatttgacgaagatcattataaggttcttggcttgccatccggcgaggaaggctctaagctcacagagaaacagattacaaaggcttaccacgcaaaagctttggtgttgcacccggacaagaggcctaaaagtgatctccaagccaataccaacttccaaaggctcaaaagatcctatgaggttctcaagaatgaaagttcccgcaaagtgttcgaccaaatgcttagagatcaaagacagaaagatgggaaccattcggagcgcgatcccaagcgacagaagatggtttctgatcttgaagcaagagaacgagctgcaaagtttgacagggatgccaaagttagacaagaacaagatgagagaatgaagtggaagttagatgaagagtgtgcaagatatcgtgcaatggctaagaagagaaagcctgggggagttgggaagaaggtgaatggtggtgttgggataagcctgaggttacactaccagaaaaatggtcatttacggcccacaatgagcgccgtaaatgacaaattacagcacacaaaaacgcgccgtaaatggacgtgccgtaaaagacaaacctcttttacggcgtgtttccagattgccgtaaaagaccccacgagcgcgccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

281

Amino Acids

32.19

Weight (kDa)

9.74

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23590 AT5G23590
fragaria_vesca	FvH4_2g15640 FvH4_2g15640 FvH4_2g15640 FvH4_5g36760
malus_domestica	MD05G1124900.v1.1
prunus_persica	Prupe.8G168900_v2.0.a1
pyrus_communis	pycom05g11900
rosa_chinensis	RchiOBHm_Chr6g0278841
rosa_laevigata	RLG00000000874 RLG00000000877 RLG00000013190
rosa_multiflora	Rmu_sc0004165.1_g000050 Rmu_sc0004380.1_g000008 Rmu_sc0007085.1_g000002 Rmu_sc0007085.1_g000005 Rmu_sc0024310.1_g000002 Rmu_sc0038395.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222310 Rroxscaffold_3G00222350 Rroxscaffold_3G00222370 Rroxscaffold_7G00189600
rosa_rugosa	Rorug06G0119500 Rorug06G0119600
rosa_samantha	Rh6AG228000 Rh6BG233700 Rh6CG236100 Rh6DG227300 Rh7AG472700 Rh7BG443000 Rh7CG489600 Rh7CG489700 Rh7CG489900 Rh7CG490000 Rh7DG458000 Rh7DG458100 Rh7DG458200 Rh7DG458300
rosa_wichuraiana	Rw6G020010 Rw7G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AccII	CGCG	3 cut(s)	474, 760, 839
AccIII	TCCGGA	1 cut(s)	5
AciI	CCGC	2 cut(s)	65, 412
AclWI	GGATC	2 cut(s)	375, 470
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	509
AjiI	CACGTC	1 cut(s)	774
AjnI	CCWGG	1 cut(s)	634
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AluBI	AGCT	3 cut(s)	268, 308, 524
AluI	AGCT	3 cut(s)	268, 308, 524
AlwI	GGATC	2 cut(s)	375, 470
Aor13HI	TCCGGA	1 cut(s)	5
AoxI	GGCC	2 cut(s)	332, 713
ApeKI	GCWGC	2 cut(s)	73, 524
AspLEI	GCGC	5 cut(s)	474, 728, 762, 839, 841
AspS9I	GGNCC	1 cut(s)	714
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	667
AxyI	CCTNAGG	1 cut(s)	680
BauI	CACGAG	2 cut(s)	55, 832
BbvI	GCAGC	2 cut(s)	85, 511
BccI	CCATC	4 cut(s)	133, 253, 449, 487
BceAI	ACGGC	7 cut(s)	713, 728, 747, 762, 803, 816, 826
BcgI	CGANNNNNNTGC	2 cut(s)	403, 437
BciT130I	CCWGG	1 cut(s)	636
BcnI	CCSGG	1 cut(s)	323
BfoI	RGCGCY	1 cut(s)	729
BisI	GCNGC	2 cut(s)	74, 525
BlsI	GCNGC	2 cut(s)	75, 526
Bme1390I	CCNGG	2 cut(s)	323, 636
BmgBI	CACGTC	1 cut(s)	774
BmgT120I	GGNCC	1 cut(s)	714
BmiI	GGNNCC	1 cut(s)	461
BmrFI	CCNGG	2 cut(s)	323, 636
BmsI	GCATC	1 cut(s)	532
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	635
BsaWI	WCCGGW	1 cut(s)	5
Bse21I	CCTNAGG	1 cut(s)	680
Bse3DI	GCAATG	1 cut(s)	621
BseAI	TCCGGA	1 cut(s)	5
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	1 cut(s)	635
BseGI	GGATG	2 cut(s)	245, 547
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	2 cut(s)	141, 671
BsePI	GCGCGC	1 cut(s)	837
BseXI	GCAGC	2 cut(s)	85, 511
Bsh1236I	CGCG	3 cut(s)	474, 760, 839
BshFI	GGCC	2 cut(s)	334, 715
BsiSI	CCGG	3 cut(s)	6, 249, 323
BslFI	GGGAC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	334, 715
Bsp13I	TCCGGA	1 cut(s)	5
Bsp143I	GATC	8 cut(s)	103, 183, 220, 343, 380, 439, 475, 502
BspACI	CCGC	2 cut(s)	65, 412
BspANI	GGCC	2 cut(s)	334, 715
BspCNI	CTCAG	2 cut(s)	142, 672
BspEI	TCCGGA	1 cut(s)	5
BspFNI	CGCG	3 cut(s)	474, 760, 839
BspLI	GGNNCC	1 cut(s)	461
BspPI	GGATC	2 cut(s)	375, 470
BsrDI	GCAATG	1 cut(s)	621
BssECI	CCNNGG	1 cut(s)	635
BssHII	GCGCGC	1 cut(s)	837
BssMI	GATC	8 cut(s)	103, 183, 220, 343, 380, 439, 475, 502
BssSI	CACGAG	2 cut(s)	55, 832
Bst2BI	CACGAG	2 cut(s)	55, 832
Bst2UI	CCWGG	1 cut(s)	636
Bst6I	CTCTTC	2 cut(s)	588, 620
BstC8I	GCNNGC	2 cut(s)	242, 839
BstDEI	CTNAG	5 cut(s)	150, 264, 434, 621, 680
BstF5I	GGATG	2 cut(s)	245, 547
BstFNI	CGCG	3 cut(s)	474, 760, 839
BstH2I	RGCGCY	1 cut(s)	729
BstHHI	GCGC	5 cut(s)	474, 728, 762, 839, 841
BstKTI	GATC	8 cut(s)	106, 186, 223, 346, 383, 442, 478, 505
BstMBI	GATC	8 cut(s)	103, 183, 220, 343, 380, 439, 475, 502
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 299
BstNI	CCWGG	1 cut(s)	636
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	2 cut(s)	321, 634
BstUI	CGCG	3 cut(s)	474, 760, 839
BstV1I	GCAGC	2 cut(s)	85, 511
BstX2I	RGATCY	1 cut(s)	380
BstXI	CCANNNNNNTGG	1 cut(s)	701
BstYI	RGATCY	1 cut(s)	380
Bsu36I	CCTNAGG	1 cut(s)	680
BsuRI	GGCC	2 cut(s)	334, 715
BtrI	CACGTC	1 cut(s)	774
BtsCI	GGATG	2 cut(s)	245, 547
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	242, 839
CfoI	GCGC	5 cut(s)	474, 728, 762, 839, 841
Cfr13I	GGNCC	1 cut(s)	714
CviAII	CATG	2 cut(s)	23, 83
DdeI	CTNAG	5 cut(s)	150, 264, 434, 621, 680
DpnI	GATC	8 cut(s)	105, 185, 222, 345, 382, 441, 477, 504
DpnII	GATC	8 cut(s)	103, 183, 220, 343, 380, 439, 475, 502
Eam1104I	CTCTTC	2 cut(s)	588, 620
EarI	CTCTTC	2 cut(s)	588, 620
Eco147I	AGGCCT	1 cut(s)	334
Eco32I	GATATC	1 cut(s)	608
Eco81I	CCTNAGG	1 cut(s)	680
EcoRII	CCWGG	1 cut(s)	634
EcoRV	GATATC	1 cut(s)	608
FaeI	CATG	2 cut(s)	26, 86
FaiI	YATR	7 cut(s)	24, 84, 95, 132, 209, 228, 387
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	2 cut(s)	22, 82
FauI	CCCGC	1 cut(s)	419
Fnu4HI	GCNGC	2 cut(s)	74, 525
FokI	GGATG	2 cut(s)	232, 554
Fsp4HI	GCNGC	2 cut(s)	74, 525
GlaI	GCGC	5 cut(s)	473, 727, 761, 838, 840
GluI	GCNGC	2 cut(s)	74, 525
HaeII	RGCGCY	1 cut(s)	729
HaeIII	GGCC	2 cut(s)	334, 715
HapII	CCGG	3 cut(s)	6, 249, 323
HhaI	GCGC	5 cut(s)	474, 728, 762, 839, 841
Hin1II	CATG	2 cut(s)	26, 86
Hin6I	GCGC	5 cut(s)	472, 726, 760, 837, 839
HinP1I	GCGC	5 cut(s)	472, 726, 760, 837, 839
HindIII	AAGCTT	1 cut(s)	306
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	3 cut(s)	6, 249, 323
HphI	GGTGA	1 cut(s)	667
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	469, 502
Hpy188III	TCNNGA	4 cut(s)	6, 397, 506, 811
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	3 cut(s)	148, 251, 646
HpyCH4IV	ACGT	1 cut(s)	773
HpyCH4V	TGCA	5 cut(s)	26, 319, 527, 602, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 299
HpyF3I	CTNAG	5 cut(s)	150, 264, 434, 621, 680
HpySE526I	ACGT	1 cut(s)	773
Hsp92II	CATG	2 cut(s)	26, 86
HspAI	GCGC	5 cut(s)	472, 726, 760, 837, 839
Kpn2I	TCCGGA	1 cut(s)	5
Kzo9I	GATC	8 cut(s)	103, 183, 220, 343, 380, 439, 475, 502
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	2 cut(s)	85, 511
LweI	GCATC	1 cut(s)	532
MaeII	ACGT	1 cut(s)	773
MaeIII	GTNAC	1 cut(s)	684
MalI	GATC	8 cut(s)	105, 185, 222, 345, 382, 441, 477, 504
MboI	GATC	8 cut(s)	103, 183, 220, 343, 380, 439, 475, 502
MboII	GAAGA	5 cut(s)	230, 502, 605, 637, 661
MflI	RGATCY	1 cut(s)	380
MluCI	AATT	1 cut(s)	740
MnlI	CCTC	5 cut(s)	247, 324, 382, 675, 802
MroI	TCCGGA	1 cut(s)	5
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	81
MspI	CCGG	3 cut(s)	6, 249, 323
MspR9I	CCNGG	2 cut(s)	323, 636
MvaI	CCWGG	1 cut(s)	636
MvnI	CGCG	3 cut(s)	474, 760, 839
MwoI	GCNNNNNNNGC	2 cut(s)	258, 299
NciI	CCSGG	1 cut(s)	323
NdeII	GATC	8 cut(s)	103, 183, 220, 343, 380, 439, 475, 502
NlaIII	CATG	2 cut(s)	26, 86
NlaIV	GGNNCC	1 cut(s)	461
NspI	RCATGY	1 cut(s)	86
PauI	GCGCGC	1 cut(s)	837
PceI	AGGCCT	1 cut(s)	334
PciI	ACATGT	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	1 cut(s)	839
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	2 cut(s)	75, 526
PscI	ACATGT	1 cut(s)	82
PsiI	TTATAA	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	1 cut(s)	461
PspPI	GGNCC	1 cut(s)	714
PsuI	RGATCY	1 cut(s)	380
PteI	GCGCGC	1 cut(s)	837
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	2 cut(s)	74, 525
Sau3AI	GATC	8 cut(s)	103, 183, 220, 343, 380, 439, 475, 502
Sau96I	GGNCC	1 cut(s)	714
ScrFI	CCNGG	2 cut(s)	323, 636
SetI	ASST	9 cut(s)	234, 270, 310, 393, 526, 657, 686, 776, 794
SfaNI	GCATC	1 cut(s)	532
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	740
SseBI	AGGCCT	1 cut(s)	334
SsiI	CCGC	2 cut(s)	65, 412
StuI	AGGCCT	1 cut(s)	334
StyD4I	CCNGG	2 cut(s)	321, 634
TaiI	ACGT	1 cut(s)	776
TaqI	TCGA	1 cut(s)	423
TasI	AATT	1 cut(s)	740
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	2 cut(s)	73, 524
TspDTI	ATGAA	3 cut(s)	417, 590, 606
TspRI	CASTG	1 cut(s)	148
XceI	RCATGY	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.