Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002514

Physical Location & Seq

Genomic Coordinates Reverse (-)

29383406 .. 29386463

Gene Structure 3058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00189600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGATATGAATGAAGATCATTATGAGGTTCTTGGTTTACTATCTGGAGAGGAAGGCGCTAAGCTTACAGAGAAAGAGATTACAAAGGCATACAGAGTAAAGGCTTTGGTGTTGCACCCTGACAAGAGGCCAGATGATCCTGATGCCAGTGTCAATTTCCAAAGGCTCAAATCATCGTATGAGATACTCAAGGATGAAAAAGCCAGGAAATTGTTTGATGAGTTACTCAAAGTTAAGAGACAGCAGAAACGCCGCCATTTAGAGCGTGATGCCAAGCGACAAAGGATGGTCTCTGATCTTGAAGCAAGAGAACGAGCTGCCTTTGCTCCAGACCCAGCTGCGAAAGATAGAGAAGAAGAGGAGAGAATTTCTAGGAAACTTGCTGAAGAGGTTGCGAGAATACGTGCAATGCATGCAAATAAGGGGGCGCCTACTGCTTCAGTTCCAAAAAAAGATAATGGGAGAGTTGGGAAGGAGAGTGTGGGTGGTGCTGAGCAAGGGGTGGATAAGGAAAGGGTGCTTAAAGTTACATGGGAAAAGGTTGGTGAAGATTATACAGCAGAGAGGTTGAGAAACTTGTTCTCCGCGTTTGGTGAGGTTGAAGATGTTCTTATCAAGTCTAAGAAGAAAGGTTCAGCCCTGGTTGTAATGGCAACTAAAGATGCAGCTGTTGCTTCAACAAGAACTATGACTGGTGACCTTTCTAATCCATTGCTGGTTAAACCTCTTCAACCAGTTGCTGCGCCATTGGCTTCAGCAGCTCAGAAATCTGATGCACCTGATCGTCTTAATAATTTGGTTGGCACTGGGTATCAATCTTTTGAGGATGCCGTTTTGAAGAAACTTGCACAGGCTGCGCAGAAGCAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

290

Amino Acids

32.28

Weight (kDa)

9.35

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	6 - 73	1.2e-16	DnaJ domain
RRM_1	PF00076	182 - 232	3.9e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23590 AT5G23590
fragaria_vesca	FvH4_2g15640 FvH4_2g15640 FvH4_2g15640 FvH4_5g36760
malus_domestica	MD05G1124900.v1.1
prunus_persica	Prupe.8G168900_v2.0.a1
pyrus_communis	pycom05g11900
rosa_chinensis	RchiOBHm_Chr6g0278841
rosa_laevigata	RLG00000000874 RLG00000000877 RLG00000013190
rosa_multiflora	Rmu_sc0004165.1_g000050 Rmu_sc0004380.1_g000008 Rmu_sc0007085.1_g000002 Rmu_sc0007085.1_g000005 Rmu_sc0024310.1_g000002 Rmu_sc0038395.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222310 Rroxscaffold_3G00222350 Rroxscaffold_3G00222370 Rroxscaffold_7G00189600
rosa_rugosa	Rorug06G0119500 Rorug06G0119600
rosa_samantha	Rh6AG228000 Rh6BG233700 Rh6CG236100 Rh6DG227300 Rh7AG472700 Rh7BG443000 Rh7CG489600 Rh7CG489700 Rh7CG489900 Rh7CG490000 Rh7DG458000 Rh7DG458100 Rh7DG458200 Rh7DG458300
rosa_wichuraiana	Rw6G020010 Rw7G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	858
AccB1I	GGYRCC	1 cut(s)	427
AccII	CGCG	1 cut(s)	587
AciI	CCGC	2 cut(s)	253, 585
AclWI	GGATC	1 cut(s)	131
AcsI	RAATTY	1 cut(s)	366
AcuI	CTGAAG	3 cut(s)	405, 423, 738
AcyI	GRCGYC	1 cut(s)	428
AgsI	TTSAA	5 cut(s)	302, 602, 678, 731, 838
AjnI	CCWGG	2 cut(s)	203, 639
AluBI	AGCT	5 cut(s)	64, 317, 338, 668, 761
AluI	AGCT	5 cut(s)	64, 317, 338, 668, 761
Alw26I	GTCTC	2 cut(s)	232, 295
AlwI	GGATC	1 cut(s)	131
AlwNI	CAGNNNCTG	1 cut(s)	740
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	6 cut(s)	317, 338, 665, 740, 758, 854
ApoI	RAATTY	1 cut(s)	366
Asp700I	GAANNNNTTC	1 cut(s)	606
AspLEI	GCGC	4 cut(s)	59, 430, 745, 859
AsuHPI	GGTGA	3 cut(s)	557, 605, 707
BanI	GGYRCC	1 cut(s)	427
BbvI	GCAGC	6 cut(s)	304, 325, 677, 727, 770, 841
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	1 cut(s)	815
BciT130I	CCWGG	2 cut(s)	205, 641
BcoDI	GTCTC	2 cut(s)	232, 295
BfaI	CTAG	1 cut(s)	372
BfoI	RGCGCY	2 cut(s)	60, 431
BisI	GCNGC	7 cut(s)	253, 318, 339, 666, 741, 759, 855
BlpI	GCTNAGC	2 cut(s)	60, 492
BlsI	GCNGC	7 cut(s)	254, 319, 340, 667, 742, 760, 856
Bme1390I	CCNGG	2 cut(s)	205, 641
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	2 cut(s)	205, 641
BmrI	ACTGGG	1 cut(s)	816
BmsI	GCATC	5 cut(s)	133, 259, 652, 763, 817
BmuI	ACTGGG	1 cut(s)	816
BpmI	CTGGAG	2 cut(s)	66, 312
Bpu1102I	GCTNAGC	2 cut(s)	60, 492
BpuEI	CTTGAG	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	404
BsaHI	GRCGYC	1 cut(s)	428
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	639
BsaXI	ACNNNNNCTCC	2 cut(s)	566, 596
Bse1I	ACTGG	4 cut(s)	147, 697, 734, 811
Bse3DI	GCAATG	2 cut(s)	414, 710
BseBI	CCWGG	2 cut(s)	205, 641
BseDI	CCNNGG	1 cut(s)	639
BseGI	GGATG	3 cut(s)	199, 291, 832
BseMI	GCAATG	2 cut(s)	414, 710
BseMII	CTCAG	2 cut(s)	483, 776
BseNI	ACTGG	4 cut(s)	147, 697, 734, 811
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	6 cut(s)	304, 325, 677, 727, 770, 841
BseYI	CCCAGC	1 cut(s)	334
Bsh1236I	CGCG	1 cut(s)	587
BshFI	GGCC	1 cut(s)	130
BshNI	GGYRCC	1 cut(s)	427
BsmAI	GTCTC	2 cut(s)	232, 295
BsnI	GGCC	1 cut(s)	130
Bso31I	GGTCTC	1 cut(s)	295
Bsp143I	GATC	4 cut(s)	16, 136, 295, 781
Bsp1720I	GCTNAGC	2 cut(s)	60, 492
BspACI	CCGC	2 cut(s)	253, 585
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	2 cut(s)	484, 775
BspFNI	CGCG	1 cut(s)	587
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	295
BsrDI	GCAATG	2 cut(s)	414, 710
BsrI	ACTGG	4 cut(s)	147, 697, 734, 811
BssECI	CCNNGG	1 cut(s)	639
BssMI	GATC	4 cut(s)	16, 136, 295, 781
BssNI	GRCGYC	1 cut(s)	428
Bst2UI	CCWGG	2 cut(s)	205, 641
Bst6I	CTCTTC	3 cut(s)	351, 381, 732
BstACI	GRCGYC	1 cut(s)	428
BstAPI	GCANNNNNTGC	3 cut(s)	413, 671, 854
BstBAI	YACGTR	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	4 cut(s)	60, 492, 621, 762
BstEII	GGTNACC	1 cut(s)	695
BstF5I	GGATG	3 cut(s)	199, 291, 832
BstFNI	CGCG	1 cut(s)	587
BstH2I	RGCGCY	2 cut(s)	60, 431
BstHHI	GCGC	4 cut(s)	59, 430, 745, 859
BstKTI	GATC	4 cut(s)	19, 139, 298, 784
BstMAI	GTCTC	2 cut(s)	232, 295
BstMBI	GATC	4 cut(s)	16, 136, 295, 781
BstMWI	GCNNNNNNNGC	7 cut(s)	323, 413, 434, 671, 749, 758, 854
BstNI	CCWGG	2 cut(s)	205, 641
BstNSI	RCATGY	1 cut(s)	416
BstPI	GGTNACC	1 cut(s)	695
BstSCI	CCNGG	2 cut(s)	203, 639
BstUI	CGCG	1 cut(s)	587
BstV1I	GCAGC	6 cut(s)	304, 325, 677, 727, 770, 841
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	3 cut(s)	199, 291, 832
BtsIMutI	CAGTG	2 cut(s)	154, 804
Cac8I	GCNNGC	1 cut(s)	414
CaiI	CAGNNNCTG	1 cut(s)	740
CfoI	GCGC	4 cut(s)	59, 430, 745, 859
CviAII	CATG	2 cut(s)	413, 531
DdeI	CTNAG	4 cut(s)	60, 492, 621, 762
DinI	GGCGCC	1 cut(s)	429
DpnI	GATC	4 cut(s)	18, 138, 297, 783
DpnII	GATC	4 cut(s)	16, 136, 295, 781
Eam1104I	CTCTTC	3 cut(s)	351, 381, 732
EarI	CTCTTC	3 cut(s)	351, 381, 732
Eco31I	GGTCTC	1 cut(s)	295
Eco57I	CTGAAG	3 cut(s)	405, 423, 738
Eco91I	GGTNACC	1 cut(s)	695
EcoO65I	GGTNACC	1 cut(s)	695
EcoRII	CCWGG	2 cut(s)	203, 639
EcoT22I	ATGCAT	1 cut(s)	414
EgeI	GGCGCC	1 cut(s)	429
EheI	GGCGCC	1 cut(s)	429
FaeI	CATG	2 cut(s)	416, 534
FaiI	YATR	8 cut(s)	8, 24, 91, 180, 414, 532, 555, 689
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FatI	CATG	2 cut(s)	412, 530
Fnu4HI	GCNGC	7 cut(s)	253, 318, 339, 666, 741, 759, 855
FokI	GGATG	3 cut(s)	206, 298, 839
Fsp4HI	GCNGC	7 cut(s)	253, 318, 339, 666, 741, 759, 855
FspBI	CTAG	1 cut(s)	372
FspI	TGCGCA	1 cut(s)	858
GlaI	GCGC	4 cut(s)	58, 429, 744, 858
GluI	GCNGC	7 cut(s)	253, 318, 339, 666, 741, 759, 855
GsaI	CCCAGC	1 cut(s)	338
GsuI	CTGGAG	2 cut(s)	66, 312
HaeII	RGCGCY	2 cut(s)	60, 431
HaeIII	GGCC	1 cut(s)	130
HhaI	GCGC	4 cut(s)	59, 430, 745, 859
Hin1I	GRCGYC	1 cut(s)	428
Hin1II	CATG	2 cut(s)	416, 534
Hin6I	GCGC	4 cut(s)	57, 428, 743, 857
HinP1I	GCGC	4 cut(s)	57, 428, 743, 857
HindIII	AAGCTT	1 cut(s)	62
HphI	GGTGA	3 cut(s)	557, 605, 707
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	3 cut(s)	295, 765, 772
Hpy188III	TCNNGA	4 cut(s)	45, 140, 299, 329
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	47, 466
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	7 cut(s)	115, 407, 412, 416, 665, 776, 848
HpyF10VI	GCNNNNNNNGC	7 cut(s)	323, 413, 434, 671, 749, 758, 854
HpyF3I	CTNAG	4 cut(s)	60, 492, 621, 762
HpySE526I	ACGT	1 cut(s)	403
Hsp92I	GRCGYC	1 cut(s)	428
Hsp92II	CATG	2 cut(s)	416, 534
HspAI	GCGC	4 cut(s)	57, 428, 743, 857
KasI	GGCGCC	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	16, 136, 295, 781
LmnI	GCTCC	1 cut(s)	331
Lsp1109I	GCAGC	6 cut(s)	304, 325, 677, 727, 770, 841
LweI	GCATC	5 cut(s)	133, 259, 652, 763, 817
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	3 cut(s)	222, 526, 695
MalI	GATC	4 cut(s)	18, 138, 297, 783
MboI	GATC	4 cut(s)	16, 136, 295, 781
MboII	GAAGA	9 cut(s)	26, 365, 368, 398, 560, 614, 637, 719, 850
MluCI	AATT	4 cut(s)	154, 209, 366, 793
Mly113I	GGCGCC	1 cut(s)	428
MnlI	CCTC	9 cut(s)	19, 43, 120, 352, 382, 558, 589, 735, 817
Mph1103I	ATGCAT	1 cut(s)	414
MroXI	GAANNNNTTC	1 cut(s)	606
MseI	TTAA	4 cut(s)	234, 522, 720, 789
MspA1I	CMGCKG	2 cut(s)	338, 668
MspR9I	CCNGG	2 cut(s)	205, 641
MvaI	CCWGG	2 cut(s)	205, 641
MvnI	CGCG	1 cut(s)	587
MwoI	GCNNNNNNNGC	7 cut(s)	323, 413, 434, 671, 749, 758, 854
NarI	GGCGCC	1 cut(s)	428
NdeII	GATC	4 cut(s)	16, 136, 295, 781
NlaIII	CATG	2 cut(s)	416, 534
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	1 cut(s)	695
NsbI	TGCGCA	1 cut(s)	858
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	1 cut(s)	416
PaeI	GCATGC	1 cut(s)	416
PdmI	GAANNNNTTC	1 cut(s)	606
PkrI	GCNGC	7 cut(s)	254, 319, 340, 667, 742, 760, 856
PluTI	GGCGCC	1 cut(s)	431
Ppu21I	YACGTR	1 cut(s)	404
Psp6I	CCWGG	2 cut(s)	203, 639
PspEI	GGTNACC	1 cut(s)	695
PspFI	CCCAGC	1 cut(s)	334
PspGI	CCWGG	2 cut(s)	203, 639
PspN4I	GGNNCC	1 cut(s)	429
PstNI	CAGNNNCTG	1 cut(s)	740
PvuII	CAGCTG	2 cut(s)	338, 668
SaqAI	TTAA	4 cut(s)	234, 522, 720, 789
SatI	GCNGC	7 cut(s)	253, 318, 339, 666, 741, 759, 855
Sau3AI	GATC	4 cut(s)	16, 136, 295, 781
ScrFI	CCNGG	2 cut(s)	205, 641
SfaNI	GCATC	5 cut(s)	133, 259, 652, 763, 817
SfoI	GGCGCC	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SphI	GCATGC	1 cut(s)	416
Sse9I	AATT	4 cut(s)	154, 209, 366, 793
SsiI	CCGC	2 cut(s)	253, 585
SspDI	GGCGCC	1 cut(s)	427
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	2 cut(s)	203, 639
TaiI	ACGT	1 cut(s)	406
TasI	AATT	4 cut(s)	154, 209, 366, 793
TauI	GCSGC	1 cut(s)	255
Tru1I	TTAA	4 cut(s)	234, 522, 720, 789
Tru9I	TTAA	4 cut(s)	234, 522, 720, 789
TscAI	CASTG	2 cut(s)	154, 811
TseFI	GTSAC	1 cut(s)	695
TseI	GCWGC	6 cut(s)	317, 338, 665, 740, 758, 854
Tsp45I	GTSAC	1 cut(s)	695
TspDTI	ATGAA	3 cut(s)	23, 27, 210
TspRI	CASTG	2 cut(s)	154, 811
XapI	RAATTY	1 cut(s)	366
XceI	RCATGY	1 cut(s)	416
XmnI	GAANNNNTTC	1 cut(s)	606
XspI	CTAG	1 cut(s)	372
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.