Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002514

Physical Location & Seq

Genomic Coordinates Forward (+)

17398195 .. 17401387

Gene Structure 3193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G168900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGATGACATTGATCATTATAAGATTCTCGGTTTGCCTTCCGGTGAAGAAGGTGCTAAGTTTACAGAGAAGGAAATTTCAAAGGCATACAGAGCAAAGGCTCTTGAGTTGCACCCCGATAAGAGGCTGGATGATCCCGATGCCCATGCCAACTTCCAAATTCTCAAGTCATCCTATGAGATACTTAAGGATGAGAAGGCCAGGAAGCTGTTTGATGATTTACTGAGAGTTAAGAGAGAGCATCAGCGGCGCCATTTGGAGCGCGATTCCAAGCGACAGAAGATGGTCTCTGATCTTGAAGCGAGAGAACGAGCTGGCTTTGCTCCAGATGCAGCTGCCAAAGATAGAGATGAAGAGGAGAGAATTGCTAGGAAGCTTAAGGAAGAGATTGCGAGAATACGTGCAATGCATGCGAATAAAGGGGCGGCAACTGCTTCAGTTCCAAAAAGAGAAAGCAGGGGAGTTGGGAAGGAGAGTGTGGGTGGTGCTAAGCTAGGATTGGATAAGGAGAAGGTGCTTAAAGTTTCTTGGGAAAAGGTTGGTGAAGGTTATACAGCCCAGAGGTTGAGAGACTTGTTCTCCAAGTTTGGTGAGGTTGAAGATGTTGTTATCAAAGATGCTAAGAAGAGAGGTTCGGCCCTAGTTGTAATGACAACTAAAGATGCGGCTGTTGCAGCAACACAAACTGTGATGGGCGACCTTTCTAATCCATTGCTAGTTTTACCTCTTCAACCAGTTGCAGTGACTGATGCTCCACCAGTTCAGAAGTCTGATGAACCTGATCGGCTTAACAATTTGATTGGGGCGAGCTATCAAATTTTTGAGGATTCTGTTTTGCAGAAACTCCAAAAGGCTGCACAGAAGCGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

291

Amino Acids

32.49

Weight (kDa)

9.26

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23590 AT5G23590
fragaria_vesca	FvH4_2g15640 FvH4_2g15640 FvH4_2g15640 FvH4_5g36760
malus_domestica	MD05G1124900.v1.1
prunus_persica	Prupe.8G168900_v2.0.a1
pyrus_communis	pycom05g11900
rosa_chinensis	RchiOBHm_Chr6g0278841
rosa_laevigata	RLG00000000874 RLG00000000877 RLG00000013190
rosa_multiflora	Rmu_sc0004165.1_g000050 Rmu_sc0004380.1_g000008 Rmu_sc0007085.1_g000002 Rmu_sc0007085.1_g000005 Rmu_sc0024310.1_g000002 Rmu_sc0038395.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222310 Rroxscaffold_3G00222350 Rroxscaffold_3G00222370 Rroxscaffold_7G00189600
rosa_rugosa	Rorug06G0119500 Rorug06G0119600
rosa_samantha	Rh6AG228000 Rh6BG233700 Rh6CG236100 Rh6DG227300 Rh7AG472700 Rh7BG443000 Rh7CG489600 Rh7CG489700 Rh7CG489900 Rh7CG490000 Rh7DG458000 Rh7DG458100 Rh7DG458200 Rh7DG458300
rosa_wichuraiana	Rw6G020010 Rw7G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	249
AccII	CGCG	1 cut(s)	264
AciI	CCGC	3 cut(s)	247, 425, 665
AclWI	GGATC	1 cut(s)	128
AcsI	RAATTY	3 cut(s)	75, 159, 816
AcuI	CTGAAG	1 cut(s)	420
AcyI	GRCGYC	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	123
AflII	CTTAAG	2 cut(s)	185, 377
AgsI	TTSAA	4 cut(s)	81, 299, 599, 731
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	6 cut(s)	208, 314, 335, 376, 493, 810
AluI	AGCT	6 cut(s)	208, 314, 335, 376, 493, 810
Alw26I	GTCTC	2 cut(s)	292, 564
AlwI	GGATC	1 cut(s)	128
AlwNI	CAGNNNCTG	1 cut(s)	746
AoxI	GGCC	2 cut(s)	198, 636
ApeKI	GCWGC	4 cut(s)	332, 335, 674, 854
ApoI	RAATTY	3 cut(s)	75, 159, 816
AspLEI	GCGC	2 cut(s)	252, 264
AspS9I	GGNCC	1 cut(s)	637
AsuHPI	GGTGA	3 cut(s)	56, 554, 602
BanI	GGYRCC	1 cut(s)	249
BbvI	GCAGC	4 cut(s)	322, 344, 686, 841
BccI	CCATC	2 cut(s)	277, 685
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	1 cut(s)	202
BclI	TGATCA	1 cut(s)	13
BcoDI	GTCTC	2 cut(s)	292, 564
BfaI	CTAG	4 cut(s)	369, 494, 641, 716
BfoI	RGCGCY	1 cut(s)	253
BfrI	CTTAAG	2 cut(s)	185, 377
BisI	GCNGC	7 cut(s)	248, 333, 336, 426, 666, 675, 855
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	7 cut(s)	249, 334, 337, 427, 667, 676, 856
Bme1390I	CCNGG	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	637
BmiI	GGNNCC	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	202
BmsI	GCATC	6 cut(s)	130, 250, 319, 607, 652, 739
BpmI	CTGGAG	1 cut(s)	309
Bpu1102I	GCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	2 cut(s)	125, 149
BsaAI	YACGTR	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	250
BsaI	GGTCTC	1 cut(s)	292
BsaWI	WCCGGW	1 cut(s)	41
BsaXI	ACNNNNNCTCC	4 cut(s)	563, 593, 736, 766
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse1I	ACTGG	2 cut(s)	734, 758
Bse3DI	GCAATG	2 cut(s)	411, 710
BseBI	CCWGG	1 cut(s)	202
BseGI	GGATG	4 cut(s)	10, 136, 170, 196
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMI	GCAATG	2 cut(s)	411, 710
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	2 cut(s)	734, 758
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	4 cut(s)	322, 344, 686, 841
BsgI	GTGCAG	1 cut(s)	840
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	2 cut(s)	200, 638
BshNI	GGYRCC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	2 cut(s)	292, 564
BsnI	GGCC	2 cut(s)	200, 638
Bso31I	GGTCTC	1 cut(s)	292
Bsp143I	GATC	4 cut(s)	13, 133, 292, 781
Bsp1720I	GCTNAGC	1 cut(s)	489
BspACI	CCGC	3 cut(s)	247, 425, 665
BspANI	GGCC	2 cut(s)	200, 638
BspCNI	CTCAG	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	251
BspPI	GGATC	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	249
BspTI	CTTAAG	2 cut(s)	185, 377
BspTNI	GGTCTC	1 cut(s)	292
BsrDI	GCAATG	2 cut(s)	411, 710
BsrI	ACTGG	2 cut(s)	734, 758
BssMI	GATC	4 cut(s)	13, 133, 292, 781
BssNI	GRCGYC	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	688
Bst6I	CTCTTC	4 cut(s)	348, 378, 620, 732
BstACI	GRCGYC	1 cut(s)	250
BstAFI	CTTAAG	2 cut(s)	185, 377
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstBAI	YACGTR	1 cut(s)	401
BstC8I	GCNNGC	3 cut(s)	316, 411, 808
BstDEI	CTNAG	4 cut(s)	57, 224, 489, 621
BstF5I	GGATG	4 cut(s)	10, 136, 170, 196
BstFNI	CGCG	1 cut(s)	264
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	2 cut(s)	252, 264
BstKTI	GATC	4 cut(s)	16, 136, 295, 784
BstMAI	GTCTC	2 cut(s)	292, 564
BstMBI	GATC	4 cut(s)	13, 133, 292, 781
BstMWI	GCNNNNNNNGC	8 cut(s)	92, 247, 320, 329, 410, 431, 671, 674
BstNI	CCWGG	1 cut(s)	202
BstNSI	RCATGY	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	200
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	4 cut(s)	322, 344, 686, 841
BsuRI	GGCC	2 cut(s)	200, 638
BtsCI	GGATG	4 cut(s)	10, 136, 170, 196
BtsI	GCAGTG	1 cut(s)	747
BtsIMutI	CAGTG	1 cut(s)	747
Cac8I	GCNNGC	3 cut(s)	316, 411, 808
CaiI	CAGNNNCTG	1 cut(s)	746
CfoI	GCGC	2 cut(s)	252, 264
Cfr13I	GGNCC	1 cut(s)	637
CviAII	CATG	2 cut(s)	146, 410
DdeI	CTNAG	4 cut(s)	57, 224, 489, 621
DinI	GGCGCC	1 cut(s)	251
DpnI	GATC	4 cut(s)	15, 135, 294, 783
DpnII	GATC	4 cut(s)	13, 133, 292, 781
Eam1104I	CTCTTC	4 cut(s)	348, 378, 620, 732
EarI	CTCTTC	4 cut(s)	348, 378, 620, 732
Eco31I	GGTCTC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	411
EgeI	GGCGCC	1 cut(s)	251
EheI	GGCGCC	1 cut(s)	251
FaeI	CATG	2 cut(s)	149, 413
FaiI	YATR	6 cut(s)	21, 88, 147, 177, 411, 552
FatI	CATG	2 cut(s)	145, 409
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	7 cut(s)	248, 333, 336, 426, 666, 675, 855
FokI	GGATG	4 cut(s)	17, 143, 157, 203
Fsp4HI	GCNGC	7 cut(s)	248, 333, 336, 426, 666, 675, 855
FspBI	CTAG	4 cut(s)	369, 494, 641, 716
GlaI	GCGC	2 cut(s)	251, 263
GluI	GCNGC	7 cut(s)	248, 333, 336, 426, 666, 675, 855
GsuI	CTGGAG	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	2 cut(s)	200, 638
HapII	CCGG	1 cut(s)	42
HhaI	GCGC	2 cut(s)	252, 264
Hin1I	GRCGYC	1 cut(s)	250
Hin1II	CATG	2 cut(s)	149, 413
Hin6I	GCGC	2 cut(s)	250, 262
HinP1I	GCGC	2 cut(s)	250, 262
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	3 cut(s)	25, 266, 827
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	3 cut(s)	56, 554, 602
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	3 cut(s)	292, 765, 772
Hpy188III	TCNNGA	4 cut(s)	104, 137, 296, 326
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	7 cut(s)	44, 48, 64, 190, 463, 505, 539
HpyCH4III	ACNGT	1 cut(s)	688
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	8 cut(s)	112, 332, 404, 409, 674, 740, 838, 857
HpyF10VI	GCNNNNNNNGC	8 cut(s)	92, 247, 320, 329, 410, 431, 671, 674
HpyF3I	CTNAG	4 cut(s)	57, 224, 489, 621
HpySE526I	ACGT	1 cut(s)	400
Hsp92I	GRCGYC	1 cut(s)	250
Hsp92II	CATG	2 cut(s)	149, 413
HspAI	GCGC	2 cut(s)	250, 262
KasI	GGCGCC	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	4 cut(s)	13, 133, 292, 781
LmnI	GCTCC	3 cut(s)	259, 328, 757
Lsp1109I	GCAGC	4 cut(s)	322, 344, 686, 841
LweI	GCATC	6 cut(s)	130, 250, 319, 607, 652, 739
MaeI	CTAG	4 cut(s)	369, 494, 641, 716
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	1 cut(s)	742
MalI	GATC	4 cut(s)	15, 135, 294, 783
MboI	GATC	4 cut(s)	13, 133, 292, 781
MboII	GAAGA	7 cut(s)	59, 292, 365, 395, 611, 637, 719
MluCI	AATT	5 cut(s)	75, 159, 363, 793, 816
Mly113I	GGCGCC	1 cut(s)	250
MnlI	CCTC	7 cut(s)	117, 349, 555, 586, 623, 735, 817
Mph1103I	ATGCAT	1 cut(s)	411
MseI	TTAA	5 cut(s)	186, 231, 378, 519, 789
MspA1I	CMGCKG	2 cut(s)	247, 335
MspCI	CTTAAG	2 cut(s)	185, 377
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	202
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	8 cut(s)	92, 247, 320, 329, 410, 431, 671, 674
NarI	GGCGCC	1 cut(s)	250
NdeII	GATC	4 cut(s)	13, 133, 292, 781
NlaIII	CATG	2 cut(s)	149, 413
NlaIV	GGNNCC	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	742
NsiI	ATGCAT	1 cut(s)	411
NspI	RCATGY	1 cut(s)	413
PaeI	GCATGC	1 cut(s)	413
PfeI	GAWTC	3 cut(s)	25, 266, 827
PkrI	GCNGC	7 cut(s)	249, 334, 337, 427, 667, 676, 856
PluTI	GGCGCC	1 cut(s)	253
Ppu21I	YACGTR	1 cut(s)	401
PsiI	TTATAA	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	637
PstNI	CAGNNNCTG	1 cut(s)	746
PvuII	CAGCTG	1 cut(s)	335
SaqAI	TTAA	5 cut(s)	186, 231, 378, 519, 789
SatI	GCNGC	7 cut(s)	248, 333, 336, 426, 666, 675, 855
Sau3AI	GATC	4 cut(s)	13, 133, 292, 781
Sau96I	GGNCC	1 cut(s)	637
ScrFI	CCNGG	1 cut(s)	202
SfaNI	GCATC	6 cut(s)	130, 250, 319, 607, 652, 739
SfoI	GGCGCC	1 cut(s)	251
SmlI	CTYRAG	4 cut(s)	104, 164, 185, 377
SmoI	CTYRAG	4 cut(s)	104, 164, 185, 377
SphI	GCATGC	1 cut(s)	413
Sse9I	AATT	5 cut(s)	75, 159, 363, 793, 816
SsiI	CCGC	3 cut(s)	247, 425, 665
SspDI	GGCGCC	1 cut(s)	249
SspMI	CTAG	4 cut(s)	369, 494, 641, 716
StyD4I	CCNGG	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	688
TaiI	ACGT	1 cut(s)	403
TasI	AATT	5 cut(s)	75, 159, 363, 793, 816
TauI	GCSGC	3 cut(s)	250, 428, 668
TfiI	GAWTC	3 cut(s)	25, 266, 827
Tru1I	TTAA	5 cut(s)	186, 231, 378, 519, 789
Tru9I	TTAA	5 cut(s)	186, 231, 378, 519, 789
TscAI	CASTG	1 cut(s)	747
TseFI	GTSAC	1 cut(s)	742
TseI	GCWGC	4 cut(s)	332, 335, 674, 854
Tsp45I	GTSAC	1 cut(s)	742
TspDTI	ATGAA	2 cut(s)	366, 789
TspRI	CASTG	1 cut(s)	747
Vha464I	CTTAAG	2 cut(s)	185, 377
XapI	RAATTY	3 cut(s)	75, 159, 816
XceI	RCATGY	1 cut(s)	413
XspI	CTAG	4 cut(s)	369, 494, 641, 716
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.