Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002514

Physical Location & Seq

Genomic Coordinates Forward (+)

7261080 .. 7261583

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000874

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAAGTGCAAGTTAGATGAAGAGTGTGCAAGATATCGTGCAATGCCTCAGAAGAGAGGGCCTGGGGGAGTTGGGAAGAAGGTGAATGGTGGTGTTGGGATAAGCTTGAGGTTAGAAGAAGAGAAGGTGATTAGAGTGCGTTGGGAAAAGTTTGGGGGTGAAGGTTATACAGCAAAAAGGTTGAGAGACTTGTTGTCCAAGTTTGGTGGAGTTAAAGACCTCATCCTTGGTTCAGGTTGTTTGGCTTTGGTTCTGATGGAGACTAGAGAGGCAGCTGTTGCTGCGACAGGAGCTGTAATTGGTGATCTTTCTAATCCGTTGAGGGTTTCACTTTTTCAACCAGTTGCACCAAAGAGGCCGGTGGCTCCGACAGCTGAGAAGTCTGATGAACCTGATCGAATTAATAATTTGGTTGGGGTTGGCTTTCGAACATTTGAAGATGATGTTTTAAAGAAGGTTGCACAGGCTGGGCAGAAGCAAATACTTGATAGACAAAGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

168

Amino Acids

18.12

Weight (kDa)

9.57

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23590 AT5G23590
fragaria_vesca	FvH4_2g15640 FvH4_2g15640 FvH4_2g15640 FvH4_5g36760
malus_domestica	MD05G1124900.v1.1
prunus_persica	Prupe.8G168900_v2.0.a1
pyrus_communis	pycom05g11900
rosa_chinensis	RchiOBHm_Chr6g0278841
rosa_laevigata	RLG00000000874 RLG00000000877 RLG00000013190
rosa_multiflora	Rmu_sc0004165.1_g000050 Rmu_sc0004380.1_g000008 Rmu_sc0007085.1_g000002 Rmu_sc0007085.1_g000005 Rmu_sc0024310.1_g000002 Rmu_sc0038395.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222310 Rroxscaffold_3G00222350 Rroxscaffold_3G00222370 Rroxscaffold_7G00189600
rosa_rugosa	Rorug06G0119500 Rorug06G0119600
rosa_samantha	Rh6AG228000 Rh6BG233700 Rh6CG236100 Rh6DG227300 Rh7AG472700 Rh7BG443000 Rh7CG489600 Rh7CG489700 Rh7CG489900 Rh7CG490000 Rh7DG458000 Rh7DG458100 Rh7DG458200 Rh7DG458300
rosa_wichuraiana	Rw6G020010 Rw7G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	338, 437
AhdI	GACNNNNNGTC	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	4 cut(s)	105, 275, 293, 374
AluI	AGCT	4 cut(s)	105, 275, 293, 374
Alw26I	GTCTC	2 cut(s)	180, 254
AlwNI	CAGNNNCTG	1 cut(s)	293
AoxI	GGCC	2 cut(s)	59, 356
ApeKI	GCWGC	2 cut(s)	272, 281
AseI	ATTAAT	1 cut(s)	402
AspS9I	GGNCC	1 cut(s)	59
AsuHPI	GGTGA	4 cut(s)	94, 139, 170, 314
AsuII	TTCGAA	1 cut(s)	427
BbvI	GCAGC	2 cut(s)	268, 284
BccI	CCATC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	180, 254
BfaI	CTAG	1 cut(s)	264
BisI	GCNGC	2 cut(s)	273, 282
BlsI	GCNGC	2 cut(s)	274, 283
Bme1390I	CCNGG	1 cut(s)	63
BmeRI	GACNNNNNGTC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	1 cut(s)	63
Bpu14I	TTCGAA	1 cut(s)	427
BpuEI	CTTGAG	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	62, 226
Bse118I	RCCGGY	1 cut(s)	358
Bse1I	ACTGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	2 cut(s)	62, 226
BseGI	GGATG	1 cut(s)	222
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	2 cut(s)	62, 366
BseNI	ACTGG	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	268, 284
BseYI	CCCAGC	1 cut(s)	467
BshFI	GGCC	2 cut(s)	61, 358
BsiSI	CCGG	1 cut(s)	359
BsmAI	GTCTC	2 cut(s)	180, 254
BsnI	GGCC	2 cut(s)	61, 358
Bsp119I	TTCGAA	1 cut(s)	427
Bsp143I	GATC	2 cut(s)	304, 394
BspANI	GGCC	2 cut(s)	61, 358
BspCNI	CTCAG	2 cut(s)	61, 367
BspLI	GGNNCC	1 cut(s)	366
BspT104I	TTCGAA	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	358
BsrI	ACTGG	1 cut(s)	341
BssAI	RCCGGY	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	62, 226
BssMI	GATC	2 cut(s)	304, 394
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	63
Bst6I	CTCTTC	3 cut(s)	15, 47, 114
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstBI	TTCGAA	1 cut(s)	427
BstDEI	CTNAG	2 cut(s)	48, 375
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	307, 397
BstMAI	GTCTC	2 cut(s)	180, 254
BstMBI	GATC	2 cut(s)	304, 394
BstMWI	GCNNNNNNNGC	4 cut(s)	278, 281, 290, 371
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	268, 284
BsuRI	GGCC	2 cut(s)	61, 358
BtsCI	GGATG	1 cut(s)	222
CaiI	CAGNNNCTG	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	59
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
DdeI	CTNAG	2 cut(s)	48, 375
DpnI	GATC	2 cut(s)	306, 396
DpnII	GATC	2 cut(s)	304, 394
DraI	TTTAAA	1 cut(s)	450
DriI	GACNNNNNGTC	1 cut(s)	193
Eam1104I	CTCTTC	3 cut(s)	15, 47, 114
Eam1105I	GACNNNNNGTC	1 cut(s)	193
EarI	CTCTTC	3 cut(s)	15, 47, 114
Eco130I	CCWWGG	1 cut(s)	226
Eco32I	GATATC	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	35
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaiI	YATR	2 cut(s)	168, 502
Fnu4HI	GCNGC	2 cut(s)	273, 282
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	273, 282
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	2 cut(s)	273, 282
GsaI	CCCAGC	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	61, 358
HapII	CCGG	1 cut(s)	359
HindIII	AAGCTT	1 cut(s)	103
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	4 cut(s)	94, 139, 170, 314
Hpy188I	TCNGA	4 cut(s)	51, 255, 369, 385
HpyAV	CCTTC	4 cut(s)	73, 118, 155, 448
HpyCH4V	TGCA	6 cut(s)	9, 29, 41, 347, 461, 500
HpyF10VI	GCNNNNNNNGC	4 cut(s)	278, 281, 290, 371
HpyF3I	CTNAG	2 cut(s)	48, 375
Kzo9I	GATC	2 cut(s)	304, 394
LmnI	GCTCC	2 cut(s)	290, 370
LpnPI	CCDG	9 cut(s)	48, 75, 219, 273, 354, 372, 405, 449, 453
Lsp1109I	GCAGC	2 cut(s)	268, 284
MaeI	CTAG	1 cut(s)	264
MalI	GATC	2 cut(s)	306, 396
MboI	GATC	2 cut(s)	304, 394
MboII	GAAGA	6 cut(s)	32, 64, 88, 128, 131, 449
MluCI	AATT	3 cut(s)	297, 399, 406
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	7 cut(s)	50, 57, 102, 230, 262, 315, 348
MseI	TTAA	3 cut(s)	213, 402, 449
MspA1I	CMGCKG	2 cut(s)	275, 374
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	4 cut(s)	278, 281, 290, 371
NdeII	GATC	2 cut(s)	304, 394
NlaIV	GGNNCC	1 cut(s)	366
NspV	TTCGAA	1 cut(s)	427
PkrI	GCNGC	2 cut(s)	274, 283
PshBI	ATTAAT	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	61
PspFI	CCCAGC	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	59
PstNI	CAGNNNCTG	1 cut(s)	293
PvuII	CAGCTG	2 cut(s)	275, 374
SaqAI	TTAA	3 cut(s)	213, 402, 449
SatI	GCNGC	2 cut(s)	273, 282
Sau3AI	GATC	2 cut(s)	304, 394
Sau96I	GGNCC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	63
SfuI	TTCGAA	1 cut(s)	427
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	3 cut(s)	297, 399, 406
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	226
TaqI	TCGA	2 cut(s)	397, 427
TasI	AATT	3 cut(s)	297, 399, 406
Tru1I	TTAA	3 cut(s)	213, 402, 449
Tru9I	TTAA	3 cut(s)	213, 402, 449
TseI	GCWGC	2 cut(s)	272, 281
TspDTI	ATGAA	3 cut(s)	17, 33, 402
TspGWI	ACGGA	1 cut(s)	306
VspI	ATTAAT	1 cut(s)	402
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.