Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002514

Physical Location & Seq

Genomic Coordinates Reverse (-)

65105544 .. 65109591

Gene Structure 4048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG458000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTCCGCAAAAGAAAAGGGTCATGCAATAGGGATTGACCTGGGGACGACTTACTCGTGCGTGGCGGTTTGGCAGCACGAACATGTAGAGATCATAGTGAATGATCAGGGAAACAGGACAACTCCATCTTATGTTGCCTTCACTGATACTGAGAAATTGATCGGCGATGCAGCGTTTAACCAGATCATCAAAAATCCCACCAATTCGGTATTTGGGTCTAAGCTCACAGAGAAACAGATTACCAAGGCTTACCACGCAAAGGCTTTGGTGTTGCACCCGGACAAGAGGCCTAAAAGTGATCTCCAAGCCAACACCAACTTCCAGAGGCTCAAAAACCTCATAGGATCTCTCAAGAATGAAAGTTCCCGCAAAGTGTTCGACAAAATGCTTAGAGATCAAAGACAGAAAGATGGGTGGCATTCGGAGCGCAATCCCAAGCGACAGAAGATGGTTTCTGATCTTGAAGCAAGAGAACGAGCTGCAAAGTTTGACAGGGATGCGAAAGTTAGACAAGAACAAGATGAAAGAATGAAGAGGAAGTTAGATCAAGAGTCTGCAAAATATCGTGCAATGCCTCCGAAGAGAGAGACTGGGGGAGTCGGGAAGAAGGTGAATGGTGGTGTTGGGATAAGCCTGAAGTCAGAAGAAGAGAAGGTTAACGCTTTGGTTCTGATGGAGACTAGAGATGCAGCTGTTGCTGCTACAGGAGCGGTAATTGGTGATCTTTCTAATCCGTTGACGGTTTCACTTTTTCAACCAGTTGCACAGAAGATGACGGTGTCTCCGACAGCTGAGAAGTCTGCGGAACCTGATCGGGTTAATAATTTGGTTGGGGTTGGCTTTCGAACATTTGAAGATGATGTTTTAAAGAAGGTTGCACAGGCTGGGCAGAAGCAAAAACTTGATAGACAAGGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

306

Amino Acids

34.05

Weight (kDa)

9.63

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	9 - 74	4.1e-25	Hsp70 protein
DnaJ	PF00226	75 - 127	1.8e-09	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23590 AT5G23590
fragaria_vesca	FvH4_2g15640 FvH4_2g15640 FvH4_2g15640 FvH4_5g36760
malus_domestica	MD05G1124900.v1.1
prunus_persica	Prupe.8G168900_v2.0.a1
pyrus_communis	pycom05g11900
rosa_chinensis	RchiOBHm_Chr6g0278841
rosa_laevigata	RLG00000000874 RLG00000000877 RLG00000013190
rosa_multiflora	Rmu_sc0004165.1_g000050 Rmu_sc0004380.1_g000008 Rmu_sc0007085.1_g000002 Rmu_sc0007085.1_g000005 Rmu_sc0024310.1_g000002 Rmu_sc0038395.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222310 Rroxscaffold_3G00222350 Rroxscaffold_3G00222370 Rroxscaffold_7G00189600
rosa_rugosa	Rorug06G0119500 Rorug06G0119600
rosa_samantha	Rh6AG228000 Rh6BG233700 Rh6CG236100 Rh6DG227300 Rh7AG472700 Rh7BG443000 Rh7CG489600 Rh7CG489700 Rh7CG489900 Rh7CG490000 Rh7DG458000 Rh7DG458100 Rh7DG458200 Rh7DG458300
rosa_wichuraiana	Rw6G020010 Rw7G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	710
AciI	CCGC	5 cut(s)	6, 65, 367, 710, 803
AclWI	GGATC	1 cut(s)	352
AcuI	CTGAAG	1 cut(s)	656
AfiI	CCNNNNNNNGG	1 cut(s)	259
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	3 cut(s)	464, 755, 854
AjnI	CCWGG	1 cut(s)	39
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AluBI	AGCT	4 cut(s)	223, 479, 692, 791
AluI	AGCT	4 cut(s)	223, 479, 692, 791
Alw26I	GTCTC	3 cut(s)	581, 671, 786
AlwI	GGATC	1 cut(s)	352
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	5 cut(s)	73, 170, 479, 689, 698
AspLEI	GCGC	1 cut(s)	429
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	2 cut(s)	622, 731
AsuII	TTCGAA	1 cut(s)	844
BauI	CACGAG	1 cut(s)	55
BbvI	GCAGC	5 cut(s)	85, 182, 466, 685, 701
BccI	CCATC	4 cut(s)	133, 404, 442, 667
BcgI	CGANNNNNNTGC	2 cut(s)	358, 392
BciT130I	CCWGG	1 cut(s)	41
BclI	TGATCA	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	278
BcoDI	GTCTC	3 cut(s)	581, 671, 786
BfaI	CTAG	1 cut(s)	681
BfmI	CTRYAG	1 cut(s)	702
BisI	GCNGC	5 cut(s)	74, 171, 480, 690, 699
BlsI	GCNGC	5 cut(s)	75, 172, 481, 691, 700
Bme1390I	CCNGG	2 cut(s)	41, 278
BmiI	GGNNCC	1 cut(s)	807
BmrFI	CCNGG	2 cut(s)	41, 278
BmrI	ACTGGG	1 cut(s)	600
BmsI	GCATC	3 cut(s)	157, 487, 676
BmuI	ACTGGG	1 cut(s)	600
Bpu14I	TTCGAA	1 cut(s)	844
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	40, 243
BsaXI	ACNNNNNCTCC	2 cut(s)	766, 796
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	2 cut(s)	595, 758
Bse3DI	GCAATG	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	40, 243
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	2 cut(s)	141, 783
BseNI	ACTGG	2 cut(s)	595, 758
BseXI	GCAGC	5 cut(s)	85, 182, 466, 685, 701
BseYI	CCCAGC	1 cut(s)	884
BshFI	GGCC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	3 cut(s)	581, 671, 786
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	1 cut(s)	289
Bsp119I	TTCGAA	1 cut(s)	844
BspACI	CCGC	5 cut(s)	6, 65, 367, 710, 803
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	2 cut(s)	142, 784
BspLI	GGNNCC	1 cut(s)	807
BspPI	GGATC	1 cut(s)	352
BspT104I	TTCGAA	1 cut(s)	844
BsrBI	CCGCTC	1 cut(s)	710
BsrDI	GCAATG	1 cut(s)	576
BsrI	ACTGG	2 cut(s)	595, 758
BssECI	CCNNGG	2 cut(s)	40, 243
BssSI	CACGAG	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	2 cut(s)	742, 778
Bst6I	CTCTTC	3 cut(s)	527, 575, 642
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstBI	TTCGAA	1 cut(s)	844
BstDEI	CTNAG	4 cut(s)	150, 219, 389, 792
BstF5I	GGATG	1 cut(s)	502
BstHHI	GCGC	1 cut(s)	429
BstMAI	GTCTC	3 cut(s)	581, 671, 786
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 424, 695, 698, 707
BstNI	CCWGG	1 cut(s)	41
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	2 cut(s)	39, 276
BstSFI	CTRYAG	1 cut(s)	702
BstV1I	GCAGC	5 cut(s)	85, 182, 466, 685, 701
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BsuRI	GGCC	1 cut(s)	289
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	502
BtsIMutI	CAGTG	1 cut(s)	141
CfoI	GCGC	1 cut(s)	429
CviAII	CATG	2 cut(s)	23, 83
DdeI	CTNAG	4 cut(s)	150, 219, 389, 792
DraI	TTTAAA	1 cut(s)	867
Eam1104I	CTCTTC	3 cut(s)	527, 575, 642
EarI	CTCTTC	3 cut(s)	527, 575, 642
Eco130I	CCWWGG	1 cut(s)	243
Eco147I	AGGCCT	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	656
EcoRII	CCWGG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	2 cut(s)	26, 86
FaiI	YATR	6 cut(s)	24, 84, 95, 132, 341, 919
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	2 cut(s)	22, 82
FauI	CCCGC	1 cut(s)	374
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	5 cut(s)	74, 171, 480, 690, 699
FokI	GGATG	1 cut(s)	509
Fsp4HI	GCNGC	5 cut(s)	74, 171, 480, 690, 699
FspBI	CTAG	1 cut(s)	681
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	5 cut(s)	74, 171, 480, 690, 699
GsaI	CCCAGC	1 cut(s)	888
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	1 cut(s)	278
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	2 cut(s)	26, 86
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	2 cut(s)	658, 738
HindII	GTYRAC	2 cut(s)	658, 738
HinfI	GANTC	2 cut(s)	551, 597
HpaI	GTTAAC	1 cut(s)	658
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	2 cut(s)	622, 731
Hpy166II	GTNNAC	2 cut(s)	658, 738
Hpy188I	TCNGA	6 cut(s)	424, 457, 579, 643, 672, 786
Hpy188III	TCNNGA	5 cut(s)	322, 352, 461, 548, 601
Hpy8I	GTNNAC	2 cut(s)	658, 738
HpyAV	CCTTC	4 cut(s)	148, 601, 646, 865
HpyCH4III	ACNGT	2 cut(s)	742, 778
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 424, 695, 698, 707
HpyF3I	CTNAG	4 cut(s)	150, 219, 389, 792
Hsp92II	CATG	2 cut(s)	26, 86
HspAI	GCGC	1 cut(s)	427
Ksp22I	TGATCA	1 cut(s)	103
KspAI	GTTAAC	1 cut(s)	658
LmnI	GCTCC	2 cut(s)	424, 707
Lsp1109I	GCAGC	5 cut(s)	85, 182, 466, 685, 701
LweI	GCATC	3 cut(s)	157, 487, 676
MaeI	CTAG	1 cut(s)	681
MbiI	CCGCTC	1 cut(s)	710
MboII	GAAGA	8 cut(s)	457, 544, 592, 616, 656, 659, 781, 866
MflI	RGATCY	1 cut(s)	344
MluCI	AATT	4 cut(s)	155, 202, 714, 823
MlyI	GAGTC	2 cut(s)	560, 606
MmeI	TCCRAC	1 cut(s)	809
MnlI	CCTC	5 cut(s)	279, 318, 347, 528, 585
MseI	TTAA	4 cut(s)	177, 657, 819, 866
MslI	CAYNNNNRTG	1 cut(s)	81
MspA1I	CMGCKG	2 cut(s)	692, 791
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	2 cut(s)	41, 278
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	5 cut(s)	254, 424, 695, 698, 707
NciI	CCSGG	1 cut(s)	278
NlaIII	CATG	2 cut(s)	26, 86
NlaIV	GGNNCC	1 cut(s)	807
NspI	RCATGY	1 cut(s)	86
NspV	TTCGAA	1 cut(s)	844
PceI	AGGCCT	1 cut(s)	289
PciI	ACATGT	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 782
PctI	GAATGC	1 cut(s)	418
PflFI	GACNNNGTC	1 cut(s)	778
PkrI	GCNGC	5 cut(s)	75, 172, 481, 691, 700
PleI	GAGTC	2 cut(s)	559, 605
PpsI	GAGTC	2 cut(s)	559, 605
PscI	ACATGT	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	884
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	807
PsuI	RGATCY	1 cut(s)	344
PsyI	GACNNNGTC	1 cut(s)	778
PvuII	CAGCTG	2 cut(s)	692, 791
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	4 cut(s)	177, 657, 819, 866
SatI	GCNGC	5 cut(s)	74, 171, 480, 690, 699
SchI	GAGTC	2 cut(s)	560, 606
ScrFI	CCNGG	2 cut(s)	41, 278
SfaNI	GCATC	3 cut(s)	157, 487, 676
SfcI	CTRYAG	1 cut(s)	702
SfuI	TTCGAA	1 cut(s)	844
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	4 cut(s)	155, 202, 714, 823
SseBI	AGGCCT	1 cut(s)	289
SsiI	CCGC	5 cut(s)	6, 65, 367, 710, 803
SspMI	CTAG	1 cut(s)	681
StuI	AGGCCT	1 cut(s)	289
StyD4I	CCNGG	2 cut(s)	39, 276
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	742, 778
TaqI	TCGA	2 cut(s)	378, 844
TasI	AATT	4 cut(s)	155, 202, 714, 823
Tru1I	TTAA	4 cut(s)	177, 657, 819, 866
Tru9I	TTAA	4 cut(s)	177, 657, 819, 866
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	5 cut(s)	73, 170, 479, 689, 698
TspDTI	ATGAA	3 cut(s)	372, 537, 545
TspGWI	ACGGA	1 cut(s)	723
TspRI	CASTG	1 cut(s)	148
Tth111I	GACNNNGTC	1 cut(s)	778
XceI	RCATGY	1 cut(s)	86
XspI	CTAG	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.