Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002514

Physical Location & Seq

Genomic Coordinates Forward (+)

39992352 .. 39993629

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G020010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGATATGAATGAAGATCATTATGAGGTTCTTGGTTTACCATCTGGAGAGGAAGGCGCTAAGCTTACAGAGAAAGAGATTACAAAGGCATACAGAGTGAAGGCTTTGGTGTTGCACCCTGACAAGAGGCCAGATGATCCTGATGCCAGTGTCAATTTCCAAAGGCTCAAATCATCGTATGAGATACTCAAGGACGAAAAAGCCATAGAACGAGCTGCCTTTGCTCCAGACCCAGCTGCCAAAGATAGAGAAGAAGAGGAGAGAATTTCTAGGAAACTTGCTGAAGAGGTTGCGAGAATACGTGCAATGCATGCAAATAAGGGGGCGCCTACTGCTTCAGTTCCAAAAAAAGATAATGGGAGAGTTGGGAAGGAGAGTGTGGGTGGTGCTGAGCAAGGGGTGGATAAGGAAAGGGTGCTTAAAGTTACATGGGAAAAGGTTGGTGAAGATTATACAGCAGAGAGGTTGAGAAACTTGTTCTCCGCGTTTGGTGAGGTTGAAGATGTTCTTATCAAGTCTAAGAAGAAAGGTTCAGCCCTGGTTGTAATGGCAACTAAAGATGCAGCTGTTGCTTCAACAAGAACTATGACCGGTGACCTTTCTAATCCATTGCTGGTTAAACCTCTTCAACCAGTTGCTGCGCCATTGGCTCCAGCAGCTCAGAAATCTGATGCACCTGATCGTCTTAATAATTTGGTTGGCACTGGGTATCAATCTTTTGAGGATGCCGTTTTGAAGAAACTCGCACAGGCTGCCCAGAAGCAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

256

Amino Acids

27.98

Weight (kDa)

7.79

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	6 - 68	2.2e-15	DnaJ domain
RRM_1	PF00076	148 - 198	3.2e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23590 AT5G23590
fragaria_vesca	FvH4_2g15640 FvH4_2g15640 FvH4_2g15640 FvH4_5g36760
malus_domestica	MD05G1124900.v1.1
prunus_persica	Prupe.8G168900_v2.0.a1
pyrus_communis	pycom05g11900
rosa_chinensis	RchiOBHm_Chr6g0278841
rosa_laevigata	RLG00000000874 RLG00000000877 RLG00000013190
rosa_multiflora	Rmu_sc0004165.1_g000050 Rmu_sc0004380.1_g000008 Rmu_sc0007085.1_g000002 Rmu_sc0007085.1_g000005 Rmu_sc0024310.1_g000002 Rmu_sc0038395.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222310 Rroxscaffold_3G00222350 Rroxscaffold_3G00222370 Rroxscaffold_7G00189600
rosa_rugosa	Rorug06G0119500 Rorug06G0119600
rosa_samantha	Rh6AG228000 Rh6BG233700 Rh6CG236100 Rh6DG227300 Rh7AG472700 Rh7BG443000 Rh7CG489600 Rh7CG489700 Rh7CG489900 Rh7CG490000 Rh7DG458000 Rh7DG458100 Rh7DG458200 Rh7DG458300
rosa_wichuraiana	Rw6G020010 Rw7G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	325
AccII	CGCG	1 cut(s)	485
AciI	CCGC	1 cut(s)	483
AclWI	GGATC	1 cut(s)	131
AcsI	RAATTY	1 cut(s)	264
AcuI	CTGAAG	2 cut(s)	303, 321
AcyI	GRCGYC	1 cut(s)	326
AgeI	ACCGGT	1 cut(s)	590
AgsI	TTSAA	4 cut(s)	500, 576, 629, 736
AjnI	CCWGG	1 cut(s)	537
AluBI	AGCT	5 cut(s)	64, 215, 236, 566, 659
AluI	AGCT	5 cut(s)	64, 215, 236, 566, 659
AlwI	GGATC	1 cut(s)	131
AlwNI	CAGNNNCTG	1 cut(s)	638
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	6 cut(s)	215, 236, 563, 638, 656, 752
ApoI	RAATTY	1 cut(s)	264
AsiGI	ACCGGT	1 cut(s)	590
Asp700I	GAANNNNTTC	1 cut(s)	504
AspLEI	GCGC	3 cut(s)	59, 328, 643
AsuHPI	GGTGA	3 cut(s)	455, 503, 605
BanI	GGYRCC	1 cut(s)	325
BbvI	GCAGC	6 cut(s)	202, 223, 575, 625, 668, 739
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	1 cut(s)	713
BciT130I	CCWGG	1 cut(s)	539
BfaI	CTAG	1 cut(s)	270
BfoI	RGCGCY	2 cut(s)	60, 329
BisI	GCNGC	6 cut(s)	216, 237, 564, 639, 657, 753
BlpI	GCTNAGC	2 cut(s)	60, 390
BlsI	GCNGC	6 cut(s)	217, 238, 565, 640, 658, 754
Bme1390I	CCNGG	1 cut(s)	539
BmiI	GGNNCC	2 cut(s)	327, 651
BmrFI	CCNGG	1 cut(s)	539
BmrI	ACTGGG	1 cut(s)	714
BmsI	GCATC	4 cut(s)	133, 550, 661, 715
BmuI	ACTGGG	1 cut(s)	714
BpmI	CTGGAG	3 cut(s)	66, 210, 636
Bpu1102I	GCTNAGC	2 cut(s)	60, 390
BpuEI	CTTGAG	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	537
BsaWI	WCCGGW	1 cut(s)	590
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bse118I	RCCGGY	1 cut(s)	590
Bse1I	ACTGG	3 cut(s)	147, 632, 709
Bse3DI	GCAATG	2 cut(s)	312, 608
BseBI	CCWGG	1 cut(s)	539
BseDI	CCNNGG	1 cut(s)	537
BseGI	GGATG	1 cut(s)	730
BseMI	GCAATG	2 cut(s)	312, 608
BseMII	CTCAG	2 cut(s)	381, 674
BseNI	ACTGG	3 cut(s)	147, 632, 709
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	6 cut(s)	202, 223, 575, 625, 668, 739
BseYI	CCCAGC	1 cut(s)	232
Bsh1236I	CGCG	1 cut(s)	485
BshFI	GGCC	1 cut(s)	130
BshNI	GGYRCC	1 cut(s)	325
BshTI	ACCGGT	1 cut(s)	590
BsiSI	CCGG	1 cut(s)	591
BsnI	GGCC	1 cut(s)	130
Bsp143I	GATC	3 cut(s)	16, 136, 679
Bsp1720I	GCTNAGC	2 cut(s)	60, 390
BspACI	CCGC	1 cut(s)	483
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	2 cut(s)	382, 673
BspFNI	CGCG	1 cut(s)	485
BspLI	GGNNCC	2 cut(s)	327, 651
BspPI	GGATC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	325
BsrDI	GCAATG	2 cut(s)	312, 608
BsrFI	RCCGGY	1 cut(s)	590
BsrI	ACTGG	3 cut(s)	147, 632, 709
BssAI	RCCGGY	1 cut(s)	590
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	3 cut(s)	16, 136, 679
BssNI	GRCGYC	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	539
Bst6I	CTCTTC	3 cut(s)	249, 279, 630
BstACI	GRCGYC	1 cut(s)	326
BstAPI	GCANNNNNTGC	3 cut(s)	311, 569, 752
BstBAI	YACGTR	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	4 cut(s)	60, 390, 519, 660
BstEII	GGTNACC	1 cut(s)	593
BstF5I	GGATG	1 cut(s)	730
BstFNI	CGCG	1 cut(s)	485
BstH2I	RGCGCY	2 cut(s)	60, 329
BstHHI	GCGC	3 cut(s)	59, 328, 643
BstKTI	GATC	3 cut(s)	19, 139, 682
BstMBI	GATC	3 cut(s)	16, 136, 679
BstMWI	GCNNNNNNNGC	7 cut(s)	221, 311, 332, 569, 647, 656, 752
BstNI	CCWGG	1 cut(s)	539
BstNSI	RCATGY	1 cut(s)	314
BstPI	GGTNACC	1 cut(s)	593
BstSCI	CCNGG	1 cut(s)	537
BstUI	CGCG	1 cut(s)	485
BstV1I	GCAGC	6 cut(s)	202, 223, 575, 625, 668, 739
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	730
BtsIMutI	CAGTG	2 cut(s)	154, 702
Cac8I	GCNNGC	1 cut(s)	312
CaiI	CAGNNNCTG	1 cut(s)	638
CfoI	GCGC	3 cut(s)	59, 328, 643
Cfr10I	RCCGGY	1 cut(s)	590
CspAI	ACCGGT	1 cut(s)	590
CviAII	CATG	2 cut(s)	311, 429
DdeI	CTNAG	4 cut(s)	60, 390, 519, 660
DinI	GGCGCC	1 cut(s)	327
DpnI	GATC	3 cut(s)	18, 138, 681
DpnII	GATC	3 cut(s)	16, 136, 679
Eam1104I	CTCTTC	3 cut(s)	249, 279, 630
EarI	CTCTTC	3 cut(s)	249, 279, 630
Eco57I	CTGAAG	2 cut(s)	303, 321
Eco91I	GGTNACC	1 cut(s)	593
EcoO65I	GGTNACC	1 cut(s)	593
EcoRII	CCWGG	1 cut(s)	537
EcoT22I	ATGCAT	1 cut(s)	312
EgeI	GGCGCC	1 cut(s)	327
EheI	GGCGCC	1 cut(s)	327
FaeI	CATG	2 cut(s)	314, 432
FaiI	YATR	9 cut(s)	8, 24, 91, 180, 206, 312, 430, 453, 587
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FatI	CATG	2 cut(s)	310, 428
Fnu4HI	GCNGC	6 cut(s)	216, 237, 564, 639, 657, 753
FokI	GGATG	1 cut(s)	737
Fsp4HI	GCNGC	6 cut(s)	216, 237, 564, 639, 657, 753
FspBI	CTAG	1 cut(s)	270
GlaI	GCGC	3 cut(s)	58, 327, 642
GluI	GCNGC	6 cut(s)	216, 237, 564, 639, 657, 753
GsaI	CCCAGC	1 cut(s)	236
GsuI	CTGGAG	3 cut(s)	66, 210, 636
HaeII	RGCGCY	2 cut(s)	60, 329
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	1 cut(s)	591
HhaI	GCGC	3 cut(s)	59, 328, 643
Hin1I	GRCGYC	1 cut(s)	326
Hin1II	CATG	2 cut(s)	314, 432
Hin6I	GCGC	3 cut(s)	57, 326, 641
HinP1I	GCGC	3 cut(s)	57, 326, 641
HindIII	AAGCTT	1 cut(s)	62
HpaII	CCGG	1 cut(s)	591
HphI	GGTGA	3 cut(s)	455, 503, 605
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	2 cut(s)	663, 670
Hpy188III	TCNNGA	3 cut(s)	45, 140, 227
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	3 cut(s)	47, 94, 364
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	6 cut(s)	115, 305, 310, 314, 563, 674
HpyF10VI	GCNNNNNNNGC	7 cut(s)	221, 311, 332, 569, 647, 656, 752
HpyF3I	CTNAG	4 cut(s)	60, 390, 519, 660
HpySE526I	ACGT	1 cut(s)	301
Hsp92I	GRCGYC	1 cut(s)	326
Hsp92II	CATG	2 cut(s)	314, 432
HspAI	GCGC	3 cut(s)	57, 326, 641
KasI	GGCGCC	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	16, 136, 679
LmnI	GCTCC	2 cut(s)	229, 655
Lsp1109I	GCAGC	6 cut(s)	202, 223, 575, 625, 668, 739
LweI	GCATC	4 cut(s)	133, 550, 661, 715
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	2 cut(s)	424, 593
MalI	GATC	3 cut(s)	18, 138, 681
MboI	GATC	3 cut(s)	16, 136, 679
MboII	GAAGA	9 cut(s)	26, 263, 266, 296, 458, 512, 535, 617, 748
MluCI	AATT	3 cut(s)	154, 264, 691
Mly113I	GGCGCC	1 cut(s)	326
MnlI	CCTC	9 cut(s)	19, 43, 120, 250, 280, 456, 487, 633, 715
Mph1103I	ATGCAT	1 cut(s)	312
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	3 cut(s)	420, 618, 687
MspA1I	CMGCKG	2 cut(s)	236, 566
MspI	CCGG	1 cut(s)	591
MspR9I	CCNGG	1 cut(s)	539
MvaI	CCWGG	1 cut(s)	539
MvnI	CGCG	1 cut(s)	485
MwoI	GCNNNNNNNGC	7 cut(s)	221, 311, 332, 569, 647, 656, 752
NarI	GGCGCC	1 cut(s)	326
NdeII	GATC	3 cut(s)	16, 136, 679
NlaIII	CATG	2 cut(s)	314, 432
NlaIV	GGNNCC	2 cut(s)	327, 651
NmuCI	GTSAC	1 cut(s)	593
NsiI	ATGCAT	1 cut(s)	312
NspI	RCATGY	1 cut(s)	314
PaeI	GCATGC	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	504
PinAI	ACCGGT	1 cut(s)	590
PkrI	GCNGC	6 cut(s)	217, 238, 565, 640, 658, 754
PluTI	GGCGCC	1 cut(s)	329
Ppu21I	YACGTR	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	537
PspEI	GGTNACC	1 cut(s)	593
PspFI	CCCAGC	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	2 cut(s)	327, 651
PstNI	CAGNNNCTG	1 cut(s)	638
PvuII	CAGCTG	2 cut(s)	236, 566
SaqAI	TTAA	3 cut(s)	420, 618, 687
SatI	GCNGC	6 cut(s)	216, 237, 564, 639, 657, 753
Sau3AI	GATC	3 cut(s)	16, 136, 679
ScrFI	CCNGG	1 cut(s)	539
SfaNI	GCATC	4 cut(s)	133, 550, 661, 715
SfoI	GGCGCC	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SphI	GCATGC	1 cut(s)	314
Sse9I	AATT	3 cut(s)	154, 264, 691
SsiI	CCGC	1 cut(s)	483
SspDI	GGCGCC	1 cut(s)	325
SspMI	CTAG	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	537
TaiI	ACGT	1 cut(s)	304
TasI	AATT	3 cut(s)	154, 264, 691
Tru1I	TTAA	3 cut(s)	420, 618, 687
Tru9I	TTAA	3 cut(s)	420, 618, 687
TscAI	CASTG	2 cut(s)	154, 709
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	6 cut(s)	215, 236, 563, 638, 656, 752
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	2 cut(s)	23, 27
TspRI	CASTG	2 cut(s)	154, 709
XapI	RAATTY	1 cut(s)	264
XceI	RCATGY	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	1 cut(s)	270
Zsp2I	ATGCAT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.