Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002514

Physical Location & Seq

Genomic Coordinates Forward (+)

13721101 .. 13724605

Gene Structure 3505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g15640.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGATATGAATGTAGATCATTATGTGATTCTTGGTTTAGAATCTGGAGAGAAAGGCGCTGAGCTTACAGAGGAAGAGATCATAAAGGCATACAAAAAAAAGGCTTTGAAGTTGCACCCTGACAAAAACCCAGGTGACGCTGATGCCGCAGCCAATTTCCAAAGGCTCGTATCGTCGTATGAGATACTCAGGGACGAAAAGGCCAGAAAATTGTTTGACGACTTACTCAAAGTTAGGAGACAACAGCAACGCCGCGATTTACAACGTGATGCCAAGCGACAAAGGATGGTCTCTGATCTTGAAGCAAGAGAACGAGCTGCCTTTGCTCCAGACCCAGCTGCCAAAGATAGACAAGAAGAGGATAGAATTACTAGGAAACTTGCTGAAGAGATTGCGAGAATACGTGCAATGCATGCGAATAAAGGGGTGCCTACTGCTTCTGTTCCTAAAAAAGAGAATAGGAGAGTTGAGAAGGAGAGTGCGGGTGGTGCTGAGCAAGGGGTGGATATGGAAAGGATGCTTAAAGTTACATGGGAAAAGGTTGGTGAAGATTATACAGCAGAGAGGTTGAGAAAGCTGTTCTCTAGGTTTGGTGAGGTTGAAGATGTTGTTATCAAGTCTAAAAAGAAGAAAGGTTCAGCAGTGGTTGTAATGGCAACTAAAGATGCAGCTGTTGCTTCAACAAGAACTATGACTGGGGACCTTTCTAATCCATTGCTGGTTATACCTCTTCAACCAGTTGCTGCTCCAGTGGCTCCAGCAGCTCAGAAATCTGATGCACCTGATCGTCTTAATAATTTGGTTGGCACTGGGTATCAATCATTTGAGGATGCTGTTTTGAAGAAACTCGCACAGGCTGCACAGAAGCAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

292

Amino Acids

32.53

Weight (kDa)

9.45

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	6 - 73	1.5e-17	DnaJ domain
RRM_1	PF00076	182 - 233	4.4e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23590 AT5G23590
fragaria_vesca	FvH4_2g15640 FvH4_2g15640 FvH4_2g15640 FvH4_5g36760
malus_domestica	MD05G1124900.v1.1
prunus_persica	Prupe.8G168900_v2.0.a1
pyrus_communis	pycom05g11900
rosa_chinensis	RchiOBHm_Chr6g0278841
rosa_laevigata	RLG00000000874 RLG00000000877 RLG00000013190
rosa_multiflora	Rmu_sc0004165.1_g000050 Rmu_sc0004380.1_g000008 Rmu_sc0007085.1_g000002 Rmu_sc0007085.1_g000005 Rmu_sc0024310.1_g000002 Rmu_sc0038395.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222310 Rroxscaffold_3G00222350 Rroxscaffold_3G00222370 Rroxscaffold_7G00189600
rosa_rugosa	Rorug06G0119500 Rorug06G0119600
rosa_samantha	Rh6AG228000 Rh6BG233700 Rh6CG236100 Rh6DG227300 Rh7AG472700 Rh7BG443000 Rh7CG489600 Rh7CG489700 Rh7CG489900 Rh7CG490000 Rh7DG458000 Rh7DG458100 Rh7DG458200 Rh7DG458300
rosa_wichuraiana	Rw6G020010 Rw7G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	427
AccII	CGCG	1 cut(s)	255
AciI	CCGC	3 cut(s)	147, 253, 482
AcuI	CTGAAG	1 cut(s)	405
AgsI	TTSAA	6 cut(s)	109, 302, 602, 681, 734, 841
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	6 cut(s)	64, 317, 338, 577, 671, 764
AluI	AGCT	6 cut(s)	64, 317, 338, 577, 671, 764
Alw26I	GTCTC	2 cut(s)	232, 295
AlwNI	CAGNNNCTG	1 cut(s)	743
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	7 cut(s)	149, 317, 338, 668, 743, 761, 857
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	700
AsuHPI	GGTGA	3 cut(s)	146, 557, 605
AvaII	GGWCC	1 cut(s)	700
BanI	GGYRCC	1 cut(s)	427
BbvI	GCAGC	7 cut(s)	161, 304, 325, 680, 730, 773, 844
BccI	CCATC	1 cut(s)	280
BciT130I	CCWGG	1 cut(s)	132
BcoDI	GTCTC	2 cut(s)	232, 295
BfaI	CTAG	2 cut(s)	372, 585
BfoI	RGCGCY	1 cut(s)	60
BisI	GCNGC	9 cut(s)	147, 150, 253, 318, 339, 669, 744, 762, 858
BlpI	GCTNAGC	2 cut(s)	60, 492
BlsI	GCNGC	9 cut(s)	148, 151, 254, 319, 340, 670, 745, 763, 859
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	700
BmgT120I	GGNCC	1 cut(s)	700
BmiI	GGNNCC	3 cut(s)	429, 701, 756
BmrFI	CCNGG	1 cut(s)	132
BmrI	ACTGGG	2 cut(s)	705, 819
BmsI	GCATC	6 cut(s)	133, 259, 507, 655, 766, 820
BmuI	ACTGGG	2 cut(s)	705, 819
BpmI	CTGGAG	4 cut(s)	66, 312, 732, 741
Bpu1102I	GCTNAGC	2 cut(s)	60, 492
BsaAI	YACGTR	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	130
Bse1I	ACTGG	4 cut(s)	700, 737, 749, 814
Bse3DI	GCAATG	2 cut(s)	414, 713
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	3 cut(s)	291, 522, 835
BseMI	GCAATG	2 cut(s)	414, 713
BseMII	CTCAG	4 cut(s)	51, 202, 483, 779
BseNI	ACTGG	4 cut(s)	700, 737, 749, 814
BseXI	GCAGC	7 cut(s)	161, 304, 325, 680, 730, 773, 844
BseYI	CCCAGC	1 cut(s)	334
BsgI	GTGCAG	1 cut(s)	843
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	203
BshNI	GGYRCC	1 cut(s)	427
BslFI	GGGAC	2 cut(s)	206, 713
BsmAI	GTCTC	2 cut(s)	232, 295
BsmFI	GGGAC	2 cut(s)	206, 713
BsnI	GGCC	1 cut(s)	203
Bso31I	GGTCTC	1 cut(s)	295
Bsp143I	GATC	4 cut(s)	16, 78, 295, 784
Bsp1720I	GCTNAGC	2 cut(s)	60, 492
BspACI	CCGC	3 cut(s)	147, 253, 482
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	4 cut(s)	52, 201, 484, 778
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	429, 701, 756
BspT107I	GGYRCC	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	295
BsrDI	GCAATG	2 cut(s)	414, 713
BsrI	ACTGG	4 cut(s)	700, 737, 749, 814
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	4 cut(s)	16, 78, 295, 784
Bst2UI	CCWGG	1 cut(s)	132
Bst6I	CTCTTC	4 cut(s)	69, 351, 381, 735
BstAPI	GCANNNNNTGC	3 cut(s)	413, 674, 857
BstBAI	YACGTR	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	4 cut(s)	60, 188, 492, 765
BstF5I	GGATG	3 cut(s)	291, 522, 835
BstFNI	CGCG	1 cut(s)	255
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	4 cut(s)	19, 81, 298, 787
BstMAI	GTCTC	2 cut(s)	232, 295
BstMBI	GATC	4 cut(s)	16, 78, 295, 784
BstMWI	GCNNNNNNNGC	8 cut(s)	146, 323, 413, 488, 674, 752, 761, 857
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	130
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	7 cut(s)	161, 304, 325, 680, 730, 773, 844
BsuRI	GGCC	1 cut(s)	203
BtsCI	GGATG	3 cut(s)	291, 522, 835
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	3 cut(s)	648, 756, 807
Cac8I	GCNNGC	1 cut(s)	414
CaiI	CAGNNNCTG	1 cut(s)	743
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	700
CseI	GACGC	1 cut(s)	146
CviAII	CATG	2 cut(s)	413, 531
DdeI	CTNAG	4 cut(s)	60, 188, 492, 765
DpnI	GATC	4 cut(s)	18, 80, 297, 786
DpnII	GATC	4 cut(s)	16, 78, 295, 784
Eam1104I	CTCTTC	4 cut(s)	69, 351, 381, 735
EarI	CTCTTC	4 cut(s)	69, 351, 381, 735
Eco31I	GGTCTC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	700
Eco57I	CTGAAG	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	700
EcoRII	CCWGG	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	414
FaeI	CATG	2 cut(s)	416, 534
FaqI	GGGAC	2 cut(s)	206, 713
FatI	CATG	2 cut(s)	412, 530
FauI	CCCGC	1 cut(s)	475
Fnu4HI	GCNGC	9 cut(s)	147, 150, 253, 318, 339, 669, 744, 762, 858
FokI	GGATG	3 cut(s)	298, 529, 842
Fsp4HI	GCNGC	9 cut(s)	147, 150, 253, 318, 339, 669, 744, 762, 858
FspBI	CTAG	2 cut(s)	372, 585
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	9 cut(s)	147, 150, 253, 318, 339, 669, 744, 762, 858
GsaI	CCCAGC	1 cut(s)	338
GsuI	CTGGAG	4 cut(s)	66, 312, 732, 741
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	203
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	416, 534
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HinfI	GANTC	2 cut(s)	28, 41
HphI	GGTGA	3 cut(s)	146, 557, 605
Hpy188I	TCNGA	3 cut(s)	295, 768, 775
Hpy188III	TCNNGA	3 cut(s)	45, 299, 329
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	466
HpyCH4IV	ACGT	2 cut(s)	265, 403
HpyCH4V	TGCA	6 cut(s)	115, 407, 412, 668, 779, 860
HpyF10VI	GCNNNNNNNGC	8 cut(s)	146, 323, 413, 488, 674, 752, 761, 857
HpyF3I	CTNAG	4 cut(s)	60, 188, 492, 765
HpySE526I	ACGT	2 cut(s)	265, 403
Hsp92II	CATG	2 cut(s)	416, 534
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	4 cut(s)	16, 78, 295, 784
LmnI	GCTCC	3 cut(s)	331, 751, 760
Lsp1109I	GCAGC	7 cut(s)	161, 304, 325, 680, 730, 773, 844
LweI	GCATC	6 cut(s)	133, 259, 507, 655, 766, 820
MaeI	CTAG	2 cut(s)	372, 585
MaeII	ACGT	2 cut(s)	265, 403
MaeIII	GTNAC	2 cut(s)	134, 526
MalI	GATC	4 cut(s)	18, 80, 297, 786
MboI	GATC	4 cut(s)	16, 78, 295, 784
MboII	GAAGA	8 cut(s)	86, 368, 398, 560, 614, 640, 722, 853
MluCI	AATT	4 cut(s)	154, 209, 366, 796
MnlI	CCTC	6 cut(s)	64, 352, 558, 589, 738, 820
Mph1103I	ATGCAT	1 cut(s)	414
MseI	TTAA	2 cut(s)	522, 792
MspA1I	CMGCKG	2 cut(s)	338, 671
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	8 cut(s)	146, 323, 413, 488, 674, 752, 761, 857
NdeII	GATC	4 cut(s)	16, 78, 295, 784
NlaIII	CATG	2 cut(s)	416, 534
NlaIV	GGNNCC	3 cut(s)	429, 701, 756
NmuCI	GTSAC	1 cut(s)	134
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	1 cut(s)	416
PaeI	GCATGC	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	28, 41
PkrI	GCNGC	9 cut(s)	148, 151, 254, 319, 340, 670, 745, 763, 859
Ppu21I	YACGTR	1 cut(s)	404
PpuMI	RGGWCCY	1 cut(s)	700
Psp5II	RGGWCCY	1 cut(s)	700
Psp6I	CCWGG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	3 cut(s)	429, 701, 756
PspPI	GGNCC	1 cut(s)	700
PspPPI	RGGWCCY	1 cut(s)	700
PstNI	CAGNNNCTG	1 cut(s)	743
PvuII	CAGCTG	2 cut(s)	338, 671
SaqAI	TTAA	2 cut(s)	522, 792
SatI	GCNGC	9 cut(s)	147, 150, 253, 318, 339, 669, 744, 762, 858
Sau3AI	GATC	4 cut(s)	16, 78, 295, 784
Sau96I	GGNCC	1 cut(s)	700
ScrFI	CCNGG	1 cut(s)	132
SfaNI	GCATC	6 cut(s)	133, 259, 507, 655, 766, 820
SinI	GGWCC	1 cut(s)	700
SphI	GCATGC	1 cut(s)	416
Sse9I	AATT	4 cut(s)	154, 209, 366, 796
SsiI	CCGC	3 cut(s)	147, 253, 482
SspMI	CTAG	2 cut(s)	372, 585
StyD4I	CCNGG	1 cut(s)	130
TaiI	ACGT	2 cut(s)	268, 406
TasI	AATT	4 cut(s)	154, 209, 366, 796
TauI	GCSGC	2 cut(s)	149, 255
TfiI	GAWTC	2 cut(s)	28, 41
Tru1I	TTAA	2 cut(s)	522, 792
Tru9I	TTAA	2 cut(s)	522, 792
TscAI	CASTG	3 cut(s)	648, 756, 814
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	7 cut(s)	149, 317, 338, 668, 743, 761, 857
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	3 cut(s)	648, 756, 814
VpaK11BI	GGWCC	1 cut(s)	700
XceI	RCATGY	1 cut(s)	416
XspI	CTAG	2 cut(s)	372, 585
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.