Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002514

Physical Location & Seq

Genomic Coordinates Forward (+)

24720826 .. 24724467

Gene Structure 3642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1124900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGATGTCGAGGTTGATCACTATAAGGTTCTCGGTTTACCTTCTGGCGAGGAAGGCGCCAAGCTTACACAGAATGATATAAAAAAGGCATATAGAGCCATGGCTTTGGTGTTGCACCCCGACAAGAGGCCCGATGATCCCGATGCCCCGGCCAACTTCCAGAGTCTCATGTCATCCTATGAGATACTCAAGGATGTGAAGGCCAGGAAATTGTTTGATGATTTACTCAGAGTTAAGAGAGACCAGCAGCGCCGCCATTTGGAACGCGATGCCAAGCGACAAAGGATGGTCTCTGATCTTGAAGCAAGAGAACGATCTGCCTTTGCTCCGGATGCGGCTGCCAGAGATAGAGCAGAAGAGGAGGGAATCGCTAGGAAGCTTAAAGAAGAGATTGAGAGAATACGCAAAAAGCATGCGGAGAAAGGGGCGGCAACTGCTTTTGCTCCTAACAGAGAGACTGGTGGAGTTGGCAAGGAAAATGTGGGTGGTGCAAAGATGGGGTTGGATGAGGAGAAGATGCTTAAAGTTTCATGGGAAAATGTTGGTGAAGGTTATACGGCCGAGAGGTTGAGAGGTTTGTTCTCGGAGTTCGGCGCGGTTGAAGATGTTGTCATCAGGGGCAAGAAGAAGAGAGGTTCGGCTCTTGTTGTGATGGCGACTAAAGATGCAGCTGCTACTGCAACAGGAACTCTGTTAGGTGATCTTTCTAATCCATTGCTGGTTATACCTCTTAAACCAGTTTCAGTGACTGATGCTCCCCCGGTTCAGAGGCCTGAGGAACCAGATCGACTTAATAACTTGGTTGGGGCTGGATATCAATCATTCGAAGATTCTGTTTTGGAGAAACTCAAAAAGGCTGGGCAGAAGAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

292

Amino Acids

32.21

Weight (kDa)

9.11

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	6 - 73	1.8e-16	DnaJ domain
RRM_1	PF00076	180 - 228	7.9e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23590 AT5G23590
fragaria_vesca	FvH4_2g15640 FvH4_2g15640 FvH4_2g15640 FvH4_5g36760
malus_domestica	MD05G1124900.v1.1
prunus_persica	Prupe.8G168900_v2.0.a1
pyrus_communis	pycom05g11900
rosa_chinensis	RchiOBHm_Chr6g0278841
rosa_laevigata	RLG00000000874 RLG00000000877 RLG00000013190
rosa_multiflora	Rmu_sc0004165.1_g000050 Rmu_sc0004380.1_g000008 Rmu_sc0007085.1_g000002 Rmu_sc0007085.1_g000005 Rmu_sc0024310.1_g000002 Rmu_sc0038395.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222310 Rroxscaffold_3G00222350 Rroxscaffold_3G00222370 Rroxscaffold_7G00189600
rosa_rugosa	Rorug06G0119500 Rorug06G0119600
rosa_samantha	Rh6AG228000 Rh6BG233700 Rh6CG236100 Rh6DG227300 Rh7AG472700 Rh7BG443000 Rh7CG489600 Rh7CG489700 Rh7CG489900 Rh7CG490000 Rh7DG458000 Rh7DG458100 Rh7DG458200 Rh7DG458300
rosa_wichuraiana	Rw6G020010 Rw7G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AccII	CGCG	2 cut(s)	267, 596
AccIII	TCCGGA	1 cut(s)	328
AciI	CCGC	5 cut(s)	253, 335, 416, 428, 596
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	2 cut(s)	150, 558
AcyI	GRCGYC	1 cut(s)	57
AfiI	CCNNNNNNNGG	2 cut(s)	126, 259
AgsI	TTSAA	2 cut(s)	302, 602
AjnI	CCWGG	1 cut(s)	203
AluBI	AGCT	3 cut(s)	64, 379, 671
AluI	AGCT	3 cut(s)	64, 379, 671
Alw26I	GTCTC	4 cut(s)	170, 234, 295, 449
AlwI	GGATC	1 cut(s)	131
AlwNI	CAGNNNCTG	1 cut(s)	749
Aor13HI	TCCGGA	1 cut(s)	328
AoxI	GGCC	5 cut(s)	128, 150, 201, 558, 770
ApeKI	GCWGC	4 cut(s)	247, 338, 668, 671
AspLEI	GCGC	3 cut(s)	59, 252, 596
AspS9I	GGNCC	1 cut(s)	129
AsuC2I	CCSGG	2 cut(s)	149, 761
AsuHPI	GGTGA	2 cut(s)	557, 710
AsuII	TTCGAA	1 cut(s)	825
AxyI	CCTNAGG	1 cut(s)	774
BanI	GGYRCC	1 cut(s)	56
BbvI	GCAGC	4 cut(s)	259, 325, 658, 680
BccI	CCATC	3 cut(s)	280, 490, 646
BceAI	ACGGC	1 cut(s)	573
BciT130I	CCWGG	1 cut(s)	205
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	2 cut(s)	149, 761
BcoDI	GTCTC	4 cut(s)	170, 234, 295, 449
BfaI	CTAG	1 cut(s)	372
BfoI	RGCGCY	2 cut(s)	60, 253
BisI	GCNGC	7 cut(s)	248, 253, 336, 339, 429, 669, 672
BlsI	GCNGC	7 cut(s)	249, 254, 337, 340, 430, 670, 673
Bme1390I	CCNGG	3 cut(s)	149, 205, 761
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	2 cut(s)	58, 780
BmrFI	CCNGG	3 cut(s)	149, 205, 761
BmsI	GCATC	6 cut(s)	133, 259, 322, 507, 655, 742
Bpu14I	TTCGAA	1 cut(s)	825
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	2 cut(s)	149, 761
BsaBI	GATNNNNATC	1 cut(s)	817
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	2 cut(s)	234, 295
BsaJI	CCNNGG	3 cut(s)	99, 147, 759
BsaWI	WCCGGW	1 cut(s)	328
BsaXI	ACNNNNNCTCC	2 cut(s)	739, 769
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 259
Bse1I	ACTGG	2 cut(s)	463, 737
Bse21I	CCTNAGG	1 cut(s)	774
Bse3DI	GCAATG	1 cut(s)	713
Bse8I	GATNNNNATC	1 cut(s)	817
BseAI	TCCGGA	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	3 cut(s)	99, 147, 759
BseGI	GGATG	6 cut(s)	10, 173, 199, 291, 337, 511
BseJI	GATNNNNATC	1 cut(s)	817
BseLI	CCNNNNNNNGG	2 cut(s)	126, 259
BseMI	GCAATG	1 cut(s)	713
BseMII	CTCAG	2 cut(s)	241, 765
BseNI	ACTGG	2 cut(s)	463, 737
BseRI	GAGGAG	2 cut(s)	374, 524
BseX3I	CGGCCG	1 cut(s)	558
BseXI	GCAGC	4 cut(s)	259, 325, 658, 680
BseYI	CCCAGC	1 cut(s)	857
Bsh1236I	CGCG	2 cut(s)	267, 596
Bsh1285I	CGRYCG	1 cut(s)	561
BshFI	GGCC	5 cut(s)	130, 152, 203, 560, 772
BshNI	GGYRCC	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	561
BsiSI	CCGG	3 cut(s)	149, 329, 761
BslI	CCNNNNNNNGG	2 cut(s)	126, 259
BsmAI	GTCTC	4 cut(s)	170, 234, 295, 449
BsnI	GGCC	5 cut(s)	130, 152, 203, 560, 772
Bso31I	GGTCTC	2 cut(s)	234, 295
Bsp119I	TTCGAA	1 cut(s)	825
Bsp13I	TCCGGA	1 cut(s)	328
Bsp143I	GATC	6 cut(s)	16, 136, 295, 314, 700, 784
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	5 cut(s)	253, 335, 416, 428, 596
BspANI	GGCC	5 cut(s)	130, 152, 203, 560, 772
BspCNI	CTCAG	2 cut(s)	240, 766
BspEI	TCCGGA	1 cut(s)	328
BspFNI	CGCG	2 cut(s)	267, 596
BspLI	GGNNCC	2 cut(s)	58, 780
BspPI	GGATC	1 cut(s)	131
BspT104I	TTCGAA	1 cut(s)	825
BspT107I	GGYRCC	1 cut(s)	56
BspTNI	GGTCTC	2 cut(s)	234, 295
BsrDI	GCAATG	1 cut(s)	713
BsrI	ACTGG	2 cut(s)	463, 737
BssECI	CCNNGG	3 cut(s)	99, 147, 759
BssMI	GATC	6 cut(s)	16, 136, 295, 314, 700, 784
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	205
Bst6I	CTCTTC	3 cut(s)	351, 381, 623
BstACI	GRCGYC	1 cut(s)	57
BstBI	TTCGAA	1 cut(s)	825
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	2 cut(s)	227, 774
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	6 cut(s)	10, 173, 199, 291, 337, 511
BstFNI	CGCG	2 cut(s)	267, 596
BstH2I	RGCGCY	2 cut(s)	60, 253
BstHHI	GCGC	3 cut(s)	59, 252, 596
BstKTI	GATC	6 cut(s)	19, 139, 298, 317, 703, 787
BstMAI	GTCTC	4 cut(s)	170, 234, 295, 449
BstMBI	GATC	6 cut(s)	16, 136, 295, 314, 700, 784
BstMCI	CGRYCG	1 cut(s)	561
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 95, 332, 434, 677
BstNI	CCWGG	1 cut(s)	205
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	3 cut(s)	147, 203, 759
BstUI	CGCG	2 cut(s)	267, 596
BstV1I	GCAGC	4 cut(s)	259, 325, 658, 680
BstXI	CCANNNNNNTGG	1 cut(s)	106
BstZI	CGGCCG	1 cut(s)	558
Bsu36I	CCTNAGG	1 cut(s)	774
BsuRI	GGCC	5 cut(s)	130, 152, 203, 560, 772
BtgI	CCRYGG	1 cut(s)	99
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	6 cut(s)	10, 173, 199, 291, 337, 511
BtsIMutI	CAGTG	1 cut(s)	750
Cac8I	GCNNGC	1 cut(s)	414
CaiI	CAGNNNCTG	1 cut(s)	749
CfoI	GCGC	3 cut(s)	59, 252, 596
Cfr13I	GGNCC	1 cut(s)	129
CviAII	CATG	4 cut(s)	100, 169, 413, 531
DdeI	CTNAG	2 cut(s)	227, 774
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	6 cut(s)	18, 138, 297, 316, 702, 786
DpnII	GATC	6 cut(s)	16, 136, 295, 314, 700, 784
EaeI	YGGCCR	2 cut(s)	150, 558
EagI	CGGCCG	1 cut(s)	558
Eam1104I	CTCTTC	3 cut(s)	351, 381, 623
EarI	CTCTTC	3 cut(s)	351, 381, 623
EclXI	CGGCCG	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	99
Eco147I	AGGCCT	1 cut(s)	772
Eco31I	GGTCTC	2 cut(s)	234, 295
Eco32I	GATATC	1 cut(s)	815
Eco52I	CGGCCG	1 cut(s)	558
Eco81I	CCTNAGG	1 cut(s)	774
EcoRII	CCWGG	1 cut(s)	203
EcoRV	GATATC	1 cut(s)	815
EcoT14I	CCWWGG	1 cut(s)	99
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	4 cut(s)	103, 172, 416, 534
FatI	CATG	4 cut(s)	99, 168, 412, 530
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	7 cut(s)	248, 253, 336, 339, 429, 669, 672
FokI	GGATG	6 cut(s)	17, 160, 206, 298, 344, 518
Fsp4HI	GCNGC	7 cut(s)	248, 253, 336, 339, 429, 669, 672
FspBI	CTAG	1 cut(s)	372
GlaI	GCGC	3 cut(s)	58, 251, 595
GluI	GCNGC	7 cut(s)	248, 253, 336, 339, 429, 669, 672
GsaI	CCCAGC	1 cut(s)	861
HaeII	RGCGCY	2 cut(s)	60, 253
HaeIII	GGCC	5 cut(s)	130, 152, 203, 560, 772
HapII	CCGG	3 cut(s)	149, 329, 761
HhaI	GCGC	3 cut(s)	59, 252, 596
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	4 cut(s)	103, 172, 416, 534
Hin6I	GCGC	3 cut(s)	57, 250, 594
HinP1I	GCGC	3 cut(s)	57, 250, 594
HindIII	AAGCTT	2 cut(s)	62, 377
HinfI	GANTC	3 cut(s)	163, 366, 830
HpaII	CCGG	3 cut(s)	149, 329, 761
HphI	GGTGA	2 cut(s)	557, 710
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	4 cut(s)	230, 295, 586, 768
Hpy188III	TCNNGA	4 cut(s)	140, 160, 299, 329
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	4 cut(s)	47, 51, 193, 542
HpyCH4V	TGCA	4 cut(s)	115, 491, 668, 680
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 95, 332, 434, 677
HpyF3I	CTNAG	2 cut(s)	227, 774
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	4 cut(s)	103, 172, 416, 534
HspAI	GCGC	3 cut(s)	57, 250, 594
KasI	GGCGCC	1 cut(s)	56
Kpn2I	TCCGGA	1 cut(s)	328
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	6 cut(s)	16, 136, 295, 314, 700, 784
LmnI	GCTCC	3 cut(s)	331, 448, 760
Lsp1109I	GCAGC	4 cut(s)	259, 325, 658, 680
LweI	GCATC	6 cut(s)	133, 259, 322, 507, 655, 742
MaeI	CTAG	1 cut(s)	372
MaeIII	GTNAC	1 cut(s)	745
MalI	GATC	6 cut(s)	18, 138, 297, 316, 702, 786
MboI	GATC	6 cut(s)	16, 136, 295, 314, 700, 784
MboII	GAAGA	7 cut(s)	368, 398, 526, 614, 637, 640, 839
MluCI	AATT	1 cut(s)	209
Mly113I	GGCGCC	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	483
MroI	TCCGGA	1 cut(s)	328
MseI	TTAA	5 cut(s)	234, 381, 522, 732, 792
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	3 cut(s)	149, 329, 761
MspR9I	CCNGG	3 cut(s)	149, 205, 761
MvaI	CCWGG	1 cut(s)	205
MvnI	CGCG	2 cut(s)	267, 596
MwoI	GCNNNNNNNGC	5 cut(s)	54, 95, 332, 434, 677
NarI	GGCGCC	1 cut(s)	57
NciI	CCSGG	2 cut(s)	149, 761
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	6 cut(s)	16, 136, 295, 314, 700, 784
NlaIII	CATG	4 cut(s)	103, 172, 416, 534
NlaIV	GGNNCC	2 cut(s)	58, 780
NmeAIII	GCCGAG	1 cut(s)	586
NmuCI	GTSAC	1 cut(s)	745
NspI	RCATGY	1 cut(s)	416
NspV	TTCGAA	1 cut(s)	825
PaeI	GCATGC	1 cut(s)	416
PceI	AGGCCT	1 cut(s)	772
PfeI	GAWTC	2 cut(s)	366, 830
PkrI	GCNGC	7 cut(s)	249, 254, 337, 340, 430, 670, 673
PleI	GAGTC	1 cut(s)	171
PluTI	GGCGCC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	203
PspFI	CCCAGC	1 cut(s)	857
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	58, 780
PspPI	GGNCC	1 cut(s)	129
PstNI	CAGNNNCTG	1 cut(s)	749
PvuII	CAGCTG	1 cut(s)	671
SaqAI	TTAA	5 cut(s)	234, 381, 522, 732, 792
SatI	GCNGC	7 cut(s)	248, 253, 336, 339, 429, 669, 672
Sau3AI	GATC	6 cut(s)	16, 136, 295, 314, 700, 784
Sau96I	GGNCC	1 cut(s)	129
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	3 cut(s)	149, 205, 761
SfaNI	GCATC	6 cut(s)	133, 259, 322, 507, 655, 742
SfoI	GGCGCC	1 cut(s)	58
SfuI	TTCGAA	1 cut(s)	825
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SphI	GCATGC	1 cut(s)	416
Sse9I	AATT	1 cut(s)	209
SseBI	AGGCCT	1 cut(s)	772
SsiI	CCGC	5 cut(s)	253, 335, 416, 428, 596
SspDI	GGCGCC	1 cut(s)	56
SspMI	CTAG	1 cut(s)	372
StuI	AGGCCT	1 cut(s)	772
StyD4I	CCNGG	3 cut(s)	147, 203, 759
StyI	CCWWGG	1 cut(s)	99
TaqI	TCGA	3 cut(s)	9, 787, 825
TasI	AATT	1 cut(s)	209
TauI	GCSGC	3 cut(s)	255, 338, 431
TfiI	GAWTC	2 cut(s)	366, 830
Tru1I	TTAA	5 cut(s)	234, 381, 522, 732, 792
Tru9I	TTAA	5 cut(s)	234, 381, 522, 732, 792
TscAI	CASTG	1 cut(s)	750
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	4 cut(s)	247, 338, 668, 671
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	1 cut(s)	519
TspRI	CASTG	1 cut(s)	750
XceI	RCATGY	1 cut(s)	416
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.