Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002514

Physical Location & Seq

Genomic Coordinates Forward (+)

60093058 .. 60093736

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAGGGATGCCAAAGTTAGACAAGAACAAGATGAGAGAATGAAGTGGAAGTTAGATGAAGAGTGTGCAAGATATCGTGCAATGCCTCAGAAGAGAGAGCCTGGGGGAGTTGGGAAGAAGGTGAATGGTGGTGTTGGGATAAGGCTGAGGTTAGAAGAAGAGAAGGTGATTAGAGTGCGTTGGGAAAAGTTTGGGGGTGAAGGTTATACAGCAAAAAGGTTGAGAGACTTGTTGTCCAAGTTTGGTGGAGTTAAAGACCTCATCCTTGGTTCAGGTTGTTTGGCTTTGGTTCTGATGGAGACTAGAGATGCAGCTGTTGCCGCAACAGGAGAGGTAATTGGTGATCTTTCTAATCCGTTGAGGGTTTCGCTTTTTCAACCAGTTGCACCGAAGAGGATGGTGACTCCGACAGCTGAGAAGTCTGATGAACCTGATCGAGTTAATAATTTGGTTGGGGTTGGCTTTCGAACATTTGAAGATGATGTTTTAAAGAAGGTTGCACAGGCTGGGCAGAAGCAAAAACTAGATAGACAAAGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

180

Amino Acids

20.1

Weight (kDa)

9.59

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23590 AT5G23590
fragaria_vesca	FvH4_2g15640 FvH4_2g15640 FvH4_2g15640 FvH4_5g36760
malus_domestica	MD05G1124900.v1.1
prunus_persica	Prupe.8G168900_v2.0.a1
pyrus_communis	pycom05g11900
rosa_chinensis	RchiOBHm_Chr6g0278841
rosa_laevigata	RLG00000000874 RLG00000000877 RLG00000013190
rosa_multiflora	Rmu_sc0004165.1_g000050 Rmu_sc0004380.1_g000008 Rmu_sc0007085.1_g000002 Rmu_sc0007085.1_g000005 Rmu_sc0024310.1_g000002 Rmu_sc0038395.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222310 Rroxscaffold_3G00222350 Rroxscaffold_3G00222370 Rroxscaffold_7G00189600
rosa_rugosa	Rorug06G0119500 Rorug06G0119600
rosa_samantha	Rh6AG228000 Rh6BG233700 Rh6CG236100 Rh6DG227300 Rh7AG472700 Rh7BG443000 Rh7CG489600 Rh7CG489700 Rh7CG489900 Rh7CG490000 Rh7DG458000 Rh7DG458100 Rh7DG458200 Rh7DG458300
rosa_wichuraiana	Rw6G020010 Rw7G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	321
AgsI	TTSAA	2 cut(s)	377, 476
AhdI	GACNNNNNGTC	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	2 cut(s)	314, 413
AluI	AGCT	2 cut(s)	314, 413
Alw26I	GTCTC	2 cut(s)	219, 293
ApeKI	GCWGC	1 cut(s)	311
AsuHPI	GGTGA	5 cut(s)	133, 178, 209, 353, 412
AsuII	TTCGAA	1 cut(s)	466
BbvCI	CCTCAGC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	2 cut(s)	289, 391
BciT130I	CCWGG	1 cut(s)	102
BcoDI	GTCTC	2 cut(s)	219, 293
BfaI	CTAG	2 cut(s)	303, 524
BisI	GCNGC	2 cut(s)	312, 321
BlsI	GCNGC	2 cut(s)	313, 322
Bme1390I	CCNGG	1 cut(s)	102
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	1 cut(s)	298
Bpu10I	CCTNAGC	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	466
BsaJI	CCNNGG	2 cut(s)	101, 265
Bse1I	ACTGG	1 cut(s)	380
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	101, 265
BseGI	GGATG	3 cut(s)	13, 261, 402
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	3 cut(s)	101, 137, 405
BseNI	ACTGG	1 cut(s)	380
BseXI	GCAGC	1 cut(s)	323
BseYI	CCCAGC	1 cut(s)	506
BsmAI	GTCTC	2 cut(s)	219, 293
Bsp119I	TTCGAA	1 cut(s)	466
Bsp143I	GATC	2 cut(s)	343, 433
BspACI	CCGC	1 cut(s)	321
BspCNI	CTCAG	3 cut(s)	100, 138, 406
BspT104I	TTCGAA	1 cut(s)	466
BsrDI	GCAATG	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	380
BssECI	CCNNGG	2 cut(s)	101, 265
BssMI	GATC	2 cut(s)	343, 433
BssT1I	CCWWGG	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	102
Bst6I	CTCTTC	4 cut(s)	54, 86, 153, 386
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstBI	TTCGAA	1 cut(s)	466
BstDEI	CTNAG	3 cut(s)	87, 146, 414
BstF5I	GGATG	3 cut(s)	13, 261, 402
BstKTI	GATC	2 cut(s)	346, 436
BstMAI	GTCTC	2 cut(s)	219, 293
BstMBI	GATC	2 cut(s)	343, 433
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 320
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	323
BtsCI	GGATG	3 cut(s)	13, 261, 402
CspCI	CAANNNNNGTGG	2 cut(s)	226, 261
CviJI	RGCY	7 cut(s)	100, 145, 284, 314, 413, 462, 506
CviKI_1	RGCY	7 cut(s)	100, 145, 284, 314, 413, 462, 506
DdeI	CTNAG	3 cut(s)	87, 146, 414
DpnI	GATC	2 cut(s)	345, 435
DpnII	GATC	2 cut(s)	343, 433
DraI	TTTAAA	1 cut(s)	489
DriI	GACNNNNNGTC	1 cut(s)	232
Eam1104I	CTCTTC	4 cut(s)	54, 86, 153, 386
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	4 cut(s)	54, 86, 153, 386
Eco130I	CCWWGG	1 cut(s)	265
Eco32I	GATATC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	100
EcoRV	GATATC	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
FaiI	YATR	2 cut(s)	207, 541
Fnu4HI	GCNGC	2 cut(s)	312, 321
FokI	GGATG	3 cut(s)	20, 248, 409
Fsp4HI	GCNGC	2 cut(s)	312, 321
FspBI	CTAG	2 cut(s)	303, 524
GluI	GCNGC	2 cut(s)	312, 321
GsaI	CCCAGC	1 cut(s)	510
HinfI	GANTC	1 cut(s)	403
HphI	GGTGA	5 cut(s)	133, 178, 209, 353, 412
Hpy188I	TCNGA	4 cut(s)	90, 294, 408, 424
HpyAV	CCTTC	4 cut(s)	112, 157, 194, 487
HpyCH4V	TGCA	6 cut(s)	68, 80, 311, 386, 500, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 320
HpyF3I	CTNAG	3 cut(s)	87, 146, 414
Kzo9I	GATC	2 cut(s)	343, 433
LpnPI	CCDG	8 cut(s)	87, 114, 258, 312, 393, 444, 488, 492
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	303, 524
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	2 cut(s)	345, 435
MboI	GATC	2 cut(s)	343, 433
MboII	GAAGA	7 cut(s)	71, 103, 127, 167, 170, 403, 488
MluCI	AATT	2 cut(s)	336, 445
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	1 cut(s)	431
MnlI	CCTC	6 cut(s)	96, 141, 269, 325, 354, 387
MseI	TTAA	3 cut(s)	252, 441, 488
MspA1I	CMGCKG	2 cut(s)	314, 413
MspR9I	CCNGG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	317, 320
NdeII	GATC	2 cut(s)	343, 433
NmuCI	GTSAC	1 cut(s)	400
NspV	TTCGAA	1 cut(s)	466
PkrI	GCNGC	2 cut(s)	313, 322
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	100
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	100
PvuII	CAGCTG	2 cut(s)	314, 413
SaqAI	TTAA	3 cut(s)	252, 441, 488
SatI	GCNGC	2 cut(s)	312, 321
Sau3AI	GATC	2 cut(s)	343, 433
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	1 cut(s)	102
SfaNI	GCATC	1 cut(s)	298
SfuI	TTCGAA	1 cut(s)	466
Sse9I	AATT	2 cut(s)	336, 445
SsiI	CCGC	1 cut(s)	321
SspMI	CTAG	2 cut(s)	303, 524
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	265
TaqI	TCGA	2 cut(s)	436, 466
TasI	AATT	2 cut(s)	336, 445
TauI	GCSGC	1 cut(s)	323
Tru1I	TTAA	3 cut(s)	252, 441, 488
Tru9I	TTAA	3 cut(s)	252, 441, 488
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	3 cut(s)	56, 72, 441
TspGWI	ACGGA	1 cut(s)	345
XspI	CTAG	2 cut(s)	303, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.