Rorug06G0119500

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002514
Physical Location & Seq
Reverse (-)
16358331 .. 16358928
598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0119500.1

Sequence Viewer

Length: 471 bp
ATGTTCTTTTCACATGATATGCAAGTTCATGAATGGATCATAGTTACGATCAAGTCAATGAATGATTTCGTTCACAAAATCATTGGTTCTGGGAACAAATTCAATATTATCTCCACGACCCACCCCTCAACCTCAACCTCCATTACACAGAAGTACACGATTCTGGAAGAACCTAAACAAGTCATAGCTTCCAAAATGGTCTTTTGCCATCCGGTCCCTTATCCTTACGCTGTTTTCTTTTGCCATCACTTTGAGAGCGACACCAGGTTCTTCCGGGTCTCACTAGGAGGTGAGAATGGAGATAAGGTGGAAGCCGTAGCGGTTTGCCACATGGACACTTCTGATTGGGATTCTAAGCTCAGTCTGTTCCGCAACTTGGGTATCAAAGCTAGTGCCTCCTCTCCGGTGTGCCATTTCTTCCCGGAAAATCATCTTGTTTGGATTCCATTCCCAGCAACAGCTACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

156

Amino Acids

17.65

Weight (kDa)

6.53

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 16 - 148 2e-42 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 320, 370
AclWI GGATC 1 cut(s) 44
AcsI RAATTY 1 cut(s) 98
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 376
AgsI TTSAA 1 cut(s) 103
AjnI CCWGG 1 cut(s) 263
AluBI AGCT 4 cut(s) 188, 358, 389, 461
AluI AGCT 4 cut(s) 188, 358, 389, 461
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 1 cut(s) 44
AlwNI CAGNNNCTG 1 cut(s) 464
ApoI RAATTY 1 cut(s) 98
Asp700I GAANNNNTTC 2 cut(s) 65, 98
AspS9I GGNCC 1 cut(s) 214
AsuC2I CCSGG 2 cut(s) 275, 422
AsuHPI GGTGA 1 cut(s) 302
AvaII GGWCC 1 cut(s) 214
BaeI ACNNNNGTAYC 2 cut(s) 364, 397
BccI CCATC 2 cut(s) 216, 252
BceAI ACGGC 1 cut(s) 299
BciT130I CCWGG 1 cut(s) 265
BcnI CCSGG 2 cut(s) 275, 422
BcoDI GTCTC 1 cut(s) 283
BfaI CTAG 2 cut(s) 284, 390
Bme1390I CCNGG 3 cut(s) 265, 275, 422
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 3 cut(s) 265, 275, 422
BpuMI CCSGG 2 cut(s) 275, 422
BsaI GGTCTC 1 cut(s) 283
BsaWI WCCGGW 2 cut(s) 211, 403
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 376
BseBI CCWGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMII CTCAG 1 cut(s) 373
BseRI GAGGAG 1 cut(s) 388
BseYI CCCAGC 1 cut(s) 451
BsiSI CCGG 4 cut(s) 212, 274, 404, 422
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 376
BsmAI GTCTC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 200
Bso31I GGTCTC 1 cut(s) 283
Bsp143I GATC 2 cut(s) 36, 48
BspACI CCGC 2 cut(s) 320, 370
BspCNI CTCAG 1 cut(s) 372
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 216
BspPI GGATC 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 283
BssMI GATC 2 cut(s) 36, 48
Bst2UI CCWGG 1 cut(s) 265
BstDEI CTNAG 2 cut(s) 354, 359
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 2 cut(s) 39, 51
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 2 cut(s) 36, 48
BstNI CCWGG 1 cut(s) 265
BstSCI CCNGG 3 cut(s) 263, 273, 420
BtsCI GGATG 1 cut(s) 208
CaiI CAGNNNCTG 1 cut(s) 464
CciI TCATGA 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 214
CsiI ACCWGGT 1 cut(s) 263
Csp6I GTAC 1 cut(s) 154
CviAII CATG 3 cut(s) 14, 29, 331
CviJI RGCY 5 cut(s) 188, 314, 358, 389, 461
CviKI_1 RGCY 5 cut(s) 188, 314, 358, 389, 461
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 2 cut(s) 354, 359
DpnI GATC 2 cut(s) 38, 50
DpnII GATC 2 cut(s) 36, 48
Eco31I GGTCTC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 263
FaeI CATG 3 cut(s) 17, 32, 334
FaiI YATR 6 cut(s) 15, 20, 30, 41, 185, 332
FaqI GGGAC 1 cut(s) 200
FatI CATG 3 cut(s) 13, 28, 330
FokI GGATG 1 cut(s) 195
FspBI CTAG 2 cut(s) 284, 390
GsaI CCCAGC 1 cut(s) 455
HapII CCGG 4 cut(s) 212, 274, 404, 422
Hin1II CATG 3 cut(s) 17, 32, 334
HinfI GANTC 3 cut(s) 160, 350, 442
HpaII CCGG 4 cut(s) 212, 274, 404, 422
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 2 cut(s) 73, 156
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 2 cut(s) 29, 164
Hpy8I GTNNAC 2 cut(s) 73, 156
HpyCH4V TGCA 1 cut(s) 22
HpyF3I CTNAG 2 cut(s) 354, 359
Hsp92II CATG 3 cut(s) 17, 32, 334
Kzo9I GATC 2 cut(s) 36, 48
LpnPI CCDG 9 cut(s) 75, 149, 225, 250, 277, 287, 417, 435, 465
MabI ACCWGGT 1 cut(s) 263
MaeI CTAG 2 cut(s) 284, 390
MaeIII GTNAC 1 cut(s) 43
MalI GATC 2 cut(s) 38, 50
MboI GATC 2 cut(s) 36, 48
MboII GAAGA 3 cut(s) 179, 262, 409
MluCI AATT 1 cut(s) 98
MnlI CCTC 6 cut(s) 136, 142, 148, 281, 406, 409
MroXI GAANNNNTTC 2 cut(s) 65, 98
MspI CCGG 4 cut(s) 212, 274, 404, 422
MspR9I CCNGG 3 cut(s) 265, 275, 422
MvaI CCWGG 1 cut(s) 265
NciI CCSGG 2 cut(s) 275, 422
NdeII GATC 2 cut(s) 36, 48
NlaIII CATG 3 cut(s) 17, 32, 334
NlaIV GGNNCC 1 cut(s) 216
PagI TCATGA 1 cut(s) 28
PdmI GAANNNNTTC 2 cut(s) 65, 98
PfeI GAWTC 3 cut(s) 160, 350, 442
PfoI TCCNGGA 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 263
PspFI CCCAGC 1 cut(s) 451
PspGI CCWGG 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 214
PstNI CAGNNNCTG 1 cut(s) 464
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
Sau3AI GATC 2 cut(s) 36, 48
Sau96I GGNCC 1 cut(s) 214
ScrFI CCNGG 3 cut(s) 265, 275, 422
SexAI ACCWGGT 1 cut(s) 263
SinI GGWCC 1 cut(s) 214
Sse9I AATT 1 cut(s) 98
SsiI CCGC 2 cut(s) 320, 370
SspI AATATT 1 cut(s) 106
SspMI CTAG 2 cut(s) 284, 390
StyD4I CCNGG 3 cut(s) 263, 273, 420
TasI AATT 1 cut(s) 98
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 3 cut(s) 160, 350, 442
TspDTI ATGAA 3 cut(s) 17, 45, 74
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 1 cut(s) 98
XmnI GAANNNNTTC 2 cut(s) 65, 98
XspI CTAG 2 cut(s) 284, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.