Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002514

Physical Location & Seq

Genomic Coordinates Reverse (-)

26959848 .. 26960447

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g36760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAATGAGACTATACACGATGATCATTATAAGGTTCTTGGTTTGTCGTCCGGCGAGAAAGGCTCTAAGCTCACAGAGAAACAGATCAAAAGGGCTTACCTCGCCAAGGCTTTGGAGTTGCACCCGGACAAGAGCCAGTTCGACAAAACCCTTAGAGATCAAAGACAGAAGGAACTGCGCCAATCGGAGCGCGATCCCAAGCGACAGAAGATGGTTTCTGATCTTGAAGCAAGAGAACGAGCTGCAAAGTTTGACAGGGATGCCAGAGTTAGACAAGAAAAAGAAGAGAGAATGAAGAGGAAGTTAGATGAAGAGTGTGCTAGGTATAGACGTCGAAGATCACTTTTACAACCAGTTGTACAGAAGATGGCAGCGGCCCCGACACCTGAGAAGAATGATGAACCTGATCGAGTTAATAATTTGGTCGGTGTTGGCTTTCGAACATTTGAAGATGAAGTTTTGAAGAAGTTAGCAAAGGCTGGGCAGCAGCAAAAACTTGATAAACAAGGTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

172

Amino Acids

20.06

Weight (kDa)

9.75

Isoelectric Point (pI)

62.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	8 - 53	1e-07	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23590 AT5G23590
fragaria_vesca	FvH4_2g15640 FvH4_2g15640 FvH4_2g15640 FvH4_5g36760
malus_domestica	MD05G1124900.v1.1
prunus_persica	Prupe.8G168900_v2.0.a1
pyrus_communis	pycom05g11900
rosa_chinensis	RchiOBHm_Chr6g0278841
rosa_laevigata	RLG00000000874 RLG00000000877 RLG00000013190
rosa_multiflora	Rmu_sc0004165.1_g000050 Rmu_sc0004380.1_g000008 Rmu_sc0007085.1_g000002 Rmu_sc0007085.1_g000005 Rmu_sc0024310.1_g000002 Rmu_sc0038395.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222310 Rroxscaffold_3G00222350 Rroxscaffold_3G00222370 Rroxscaffold_7G00189600
rosa_rugosa	Rorug06G0119500 Rorug06G0119600
rosa_samantha	Rh6AG228000 Rh6BG233700 Rh6CG236100 Rh6DG227300 Rh7AG472700 Rh7BG443000 Rh7CG489600 Rh7CG489700 Rh7CG489900 Rh7CG490000 Rh7DG458000 Rh7DG458100 Rh7DG458200 Rh7DG458300
rosa_wichuraiana	Rw6G020010 Rw7G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	30
AatII	GACGTC	1 cut(s)	334
AccII	CGCG	1 cut(s)	192
AciI	CCGC	1 cut(s)	374
AclWI	GGATC	1 cut(s)	188
AcyI	GRCGYC	1 cut(s)	331
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgsI	TTSAA	3 cut(s)	227, 449, 463
AluBI	AGCT	2 cut(s)	70, 242
AluI	AGCT	2 cut(s)	70, 242
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	4 cut(s)	242, 371, 484, 487
AspLEI	GCGC	2 cut(s)	180, 192
AspS9I	GGNCC	1 cut(s)	376
AsuC2I	CCSGG	1 cut(s)	125
AsuII	TTCGAA	1 cut(s)	439
BbvI	GCAGC	4 cut(s)	229, 383, 496, 499
BccI	CCATC	2 cut(s)	205, 361
BclI	TGATCA	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	2
BfaI	CTAG	1 cut(s)	321
BisI	GCNGC	5 cut(s)	243, 372, 375, 485, 488
BlsI	GCNGC	5 cut(s)	244, 373, 376, 486, 489
Bme1390I	CCNGG	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	250
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
Bpu14I	TTCGAA	1 cut(s)	439
BpuMI	CCSGG	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	331
BsaJI	CCNNGG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	136, 353
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	2 cut(s)	136, 353
BseXI	GCAGC	4 cut(s)	229, 383, 496, 499
BseYI	CCCAGC	1 cut(s)	479
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	377
BsiSI	CCGG	2 cut(s)	51, 125
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	2
BsnI	GGCC	1 cut(s)	377
Bsp119I	TTCGAA	1 cut(s)	439
Bsp1407I	TGTACA	1 cut(s)	358
Bsp143I	GATC	7 cut(s)	22, 84, 157, 193, 220, 338, 406
BspACI	CCGC	1 cut(s)	374
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	1 cut(s)	379
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	378
BspPI	GGATC	1 cut(s)	188
BspT104I	TTCGAA	1 cut(s)	439
BsrGI	TGTACA	1 cut(s)	358
BsrI	ACTGG	2 cut(s)	136, 353
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	7 cut(s)	22, 84, 157, 193, 220, 338, 406
BssNI	GRCGYC	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	105
Bst6I	CTCTTC	3 cut(s)	279, 290, 306
BstACI	GRCGYC	1 cut(s)	331
BstAUI	TGTACA	1 cut(s)	358
BstBI	TTCGAA	1 cut(s)	439
BstDEI	CTNAG	3 cut(s)	66, 152, 387
BstENI	CCTNNNNNAGG	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	1 cut(s)	192
BstHHI	GCGC	2 cut(s)	180, 192
BstKTI	GATC	7 cut(s)	25, 87, 160, 196, 223, 341, 409
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	7 cut(s)	22, 84, 157, 193, 220, 338, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 101
BstSCI	CCNGG	1 cut(s)	123
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	4 cut(s)	229, 383, 496, 499
BstXI	CCANNNNNNTGG	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	265
CfoI	GCGC	2 cut(s)	180, 192
Cfr13I	GGNCC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	359
CviJI	RGCY	9 cut(s)	63, 70, 95, 110, 135, 242, 377, 435, 479
CviKI_1	RGCY	9 cut(s)	63, 70, 95, 110, 135, 242, 377, 435, 479
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	3 cut(s)	66, 152, 387
DpnI	GATC	7 cut(s)	24, 86, 159, 195, 222, 340, 408
DpnII	GATC	7 cut(s)	22, 84, 157, 193, 220, 338, 406
Eam1104I	CTCTTC	3 cut(s)	279, 290, 306
EarI	CTCTTC	3 cut(s)	279, 290, 306
Eco130I	CCWWGG	1 cut(s)	105
EcoNI	CCTNNNNNAGG	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaiI	YATR	4 cut(s)	14, 30, 327, 514
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	5 cut(s)	243, 372, 375, 485, 488
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	5 cut(s)	243, 372, 375, 485, 488
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	2 cut(s)	179, 191
GluI	GCNGC	5 cut(s)	243, 372, 375, 485, 488
GsaI	CCCAGC	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	2 cut(s)	51, 125
HhaI	GCGC	2 cut(s)	180, 192
Hin1I	GRCGYC	1 cut(s)	331
Hin6I	GCGC	2 cut(s)	178, 190
HinP1I	GCGC	2 cut(s)	178, 190
HpaII	CCGG	2 cut(s)	51, 125
Hpy188I	TCNGA	2 cut(s)	187, 220
Hpy188III	TCNNGA	1 cut(s)	224
Hpy99I	CGWCG	1 cut(s)	336
HpyAV	CCTTC	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	2 cut(s)	121, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 101
HpyF3I	CTNAG	3 cut(s)	66, 152, 387
HpySE526I	ACGT	1 cut(s)	331
Hsp92I	GRCGYC	1 cut(s)	331
HspAI	GCGC	2 cut(s)	178, 190
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	7 cut(s)	22, 84, 157, 193, 220, 338, 406
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	9 cut(s)	64, 138, 149, 241, 277, 366, 399, 417, 465
Lsp1109I	GCAGC	4 cut(s)	229, 383, 496, 499
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	331
MalI	GATC	7 cut(s)	24, 86, 159, 195, 222, 340, 408
MboI	GATC	7 cut(s)	22, 84, 157, 193, 220, 338, 406
MboII	GAAGA	9 cut(s)	220, 296, 307, 323, 348, 376, 403, 461, 475
MluCI	AATT	1 cut(s)	418
MnlI	CCTC	2 cut(s)	110, 291
MseI	TTAA	1 cut(s)	414
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	2 cut(s)	51, 125
MspR9I	CCNGG	1 cut(s)	125
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	60, 101
NciI	CCSGG	1 cut(s)	125
NdeII	GATC	7 cut(s)	22, 84, 157, 193, 220, 338, 406
NlaIV	GGNNCC	1 cut(s)	378
NspV	TTCGAA	1 cut(s)	439
PkrI	GCNGC	5 cut(s)	244, 373, 376, 486, 489
PsiI	TTATAA	1 cut(s)	30
PspFI	CCCAGC	1 cut(s)	479
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	376
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	5 cut(s)	243, 372, 375, 485, 488
Sau3AI	GATC	7 cut(s)	22, 84, 157, 193, 220, 338, 406
Sau96I	GGNCC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	125
SetI	ASST	9 cut(s)	36, 72, 102, 244, 326, 334, 388, 406, 511
SfaNI	GCATC	1 cut(s)	250
SfuI	TTCGAA	1 cut(s)	439
Sse9I	AATT	1 cut(s)	418
SsiI	CCGC	1 cut(s)	374
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	105
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	4 cut(s)	141, 334, 409, 439
TasI	AATT	1 cut(s)	418
TatI	WGTACW	1 cut(s)	358
TauI	GCSGC	1 cut(s)	377
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TseI	GCWGC	4 cut(s)	242, 371, 484, 487
TspDTI	ATGAA	5 cut(s)	17, 308, 324, 414, 468
XagI	CCTNNNNNAGG	1 cut(s)	104
XspI	CTAG	1 cut(s)	321
ZraI	GACGTC	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.