Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002514

Physical Location & Seq

Genomic Coordinates Forward (+)

16385834 .. 16386307

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0119600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAACTTATTTAAGTCATGTTATGCTTTCAATTGTTTTTGGTTTCTTAGTCCTCTCAGATTGCTTGCAAGGGACCACCTGGCCAAGTGTGTACTTGATTGGGTTTTGGATATGATGGATAGCCTAGATGTTGACCAGTGTAACTATTTCTTCATGGGCTTATGGGCAATTTGGGAAGAGCGTAACAATATAATCTGGAAAGGTGTAAATTTTCAACCTATGAACATGATTCAATGGACTACTAAGCTGTTAGAAGACTTCCAGAAGTATCATCCAAAGACGGTGAGGAAGCAAAGTAGGACTCTGACCAAGTGGCAAAATCCTCCTAGTGGTCATCTGAAAATAACTGTGGATGAGGCTTTTCGAGCTGAAGATGGGAGCAGAGGTATCAAAGTAGTAGCCAGGAATGATGCTGGTCTGGGTATTGCTGCGTTGCTAGGCATTTTCTACCTGCATACTTGGTCCTTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

157

Amino Acids

18.44

Weight (kDa)

8.71

Isoelectric Point (pI)

26.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23590 AT5G23590
fragaria_vesca	FvH4_2g15640 FvH4_2g15640 FvH4_2g15640 FvH4_5g36760
malus_domestica	MD05G1124900.v1.1
prunus_persica	Prupe.8G168900_v2.0.a1
pyrus_communis	pycom05g11900
rosa_chinensis	RchiOBHm_Chr6g0278841
rosa_laevigata	RLG00000000874 RLG00000000877 RLG00000013190
rosa_multiflora	Rmu_sc0004165.1_g000050 Rmu_sc0004380.1_g000008 Rmu_sc0007085.1_g000002 Rmu_sc0007085.1_g000005 Rmu_sc0024310.1_g000002 Rmu_sc0038395.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222310 Rroxscaffold_3G00222350 Rroxscaffold_3G00222370 Rroxscaffold_7G00189600
rosa_rugosa	Rorug06G0119500 Rorug06G0119600
rosa_samantha	Rh6AG228000 Rh6BG233700 Rh6CG236100 Rh6DG227300 Rh7AG472700 Rh7BG443000 Rh7CG489600 Rh7CG489700 Rh7CG489900 Rh7CG490000 Rh7DG458000 Rh7DG458100 Rh7DG458200 Rh7DG458300
rosa_wichuraiana	Rw6G020010 Rw7G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	459
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	329
AgsI	TTSAA	3 cut(s)	31, 215, 233
AjnI	CCWGG	2 cut(s)	78, 401
AluBI	AGCT	2 cut(s)	247, 368
AluI	AGCT	2 cut(s)	247, 368
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	73, 462
AsuHPI	GGTGA	1 cut(s)	295
AvaII	GGWCC	2 cut(s)	73, 462
BalI	TGGCCA	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	2 cut(s)	109, 368
BciT130I	CCWGG	2 cut(s)	80, 403
BfaI	CTAG	3 cut(s)	125, 327, 437
BfuAI	ACCTGC	1 cut(s)	459
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	2 cut(s)	80, 403
Bme18I	GGWCC	2 cut(s)	73, 462
BmgT120I	GGNCC	2 cut(s)	73, 462
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	2 cut(s)	80, 403
BmsI	GCATC	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	136
BseBI	CCWGG	2 cut(s)	80, 403
BseGI	GGATG	2 cut(s)	271, 358
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMII	CTCAG	1 cut(s)	70
BseNI	ACTGG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	415
BshFI	GGCC	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	74
BspMI	ACCTGC	1 cut(s)	459
BspQI	GCTCTTC	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	136
Bst2UI	CCWGG	2 cut(s)	80, 403
Bst4CI	ACNGT	2 cut(s)	283, 349
Bst6I	CTCTTC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	3 cut(s)	47, 56, 243
BstF5I	GGATG	2 cut(s)	271, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	2 cut(s)	80, 403
BstSCI	CCNGG	2 cut(s)	78, 401
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	271, 358
BtsIMutI	CAGTG	1 cut(s)	143
BveI	ACCTGC	1 cut(s)	459
Cac8I	GCNNGC	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	73, 462
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	3 cut(s)	18, 154, 226
CviJI	RGCY	7 cut(s)	83, 123, 159, 247, 359, 368, 401
CviKI_1	RGCY	7 cut(s)	83, 123, 159, 247, 359, 368, 401
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	3 cut(s)	47, 56, 243
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco47I	GGWCC	2 cut(s)	73, 462
Eco57I	CTGAAG	1 cut(s)	390
EcoRII	CCWGG	2 cut(s)	78, 401
FaeI	CATG	3 cut(s)	21, 157, 229
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	3 cut(s)	17, 153, 225
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	2 cut(s)	258, 365
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	3 cut(s)	125, 327, 437
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	83
Hin1II	CATG	3 cut(s)	21, 157, 229
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	229, 301
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	2 cut(s)	92, 133
Hpy188I	TCNGA	3 cut(s)	59, 306, 339
Hpy188III	TCNNGA	2 cut(s)	196, 262
Hpy8I	GTNNAC	2 cut(s)	92, 133
HpyCH4III	ACNGT	2 cut(s)	283, 349
HpyCH4V	TGCA	2 cut(s)	68, 454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	3 cut(s)	47, 56, 243
Hsp92II	CATG	3 cut(s)	21, 157, 229
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	378
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	3 cut(s)	125, 327, 437
MaeIII	GTNAC	2 cut(s)	140, 182
MboII	GAAGA	4 cut(s)	142, 188, 266, 383
MfeI	CAATTG	1 cut(s)	31
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	3 cut(s)	31, 168, 208
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	295
MnlI	CCTC	5 cut(s)	63, 279, 333, 349, 377
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	1 cut(s)	12
Msp20I	TGGCCA	1 cut(s)	83
MspR9I	CCNGG	2 cut(s)	80, 403
MunI	CAATTG	1 cut(s)	31
MvaI	CCWGG	2 cut(s)	80, 403
MwoI	GCNNNNNNNGC	1 cut(s)	365
NlaIII	CATG	3 cut(s)	21, 157, 229
NlaIV	GGNNCC	1 cut(s)	74
PciSI	GCTCTTC	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Psp6I	CCWGG	2 cut(s)	78, 401
PspGI	CCWGG	2 cut(s)	78, 401
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	2 cut(s)	73, 462
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	1 cut(s)	429
Sau96I	GGNCC	2 cut(s)	73, 462
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	2 cut(s)	80, 403
SetI	ASST	7 cut(s)	81, 205, 220, 249, 370, 388, 453
SfaNI	GCATC	1 cut(s)	400
SinI	GGWCC	2 cut(s)	73, 462
Sse9I	AATT	3 cut(s)	31, 168, 208
SspMI	CTAG	3 cut(s)	125, 327, 437
StyD4I	CCNGG	2 cut(s)	78, 401
TaaI	ACNGT	2 cut(s)	283, 349
TaqI	TCGA	1 cut(s)	364
TasI	AATT	3 cut(s)	31, 168, 208
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	143
TseI	GCWGC	1 cut(s)	428
TspDTI	ATGAA	3 cut(s)	17, 142, 236
TspRI	CASTG	1 cut(s)	143
VpaK11BI	GGWCC	2 cut(s)	73, 462
XapI	RAATTY	1 cut(s)	208
XspI	CTAG	3 cut(s)	125, 327, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.