Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002514

Physical Location & Seq

Genomic Coordinates Reverse (-)

51205566 .. 51206078

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG443000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCTTAGAGATCAAAGACAGAAAGATGGGAACCATTCGGAGCGCGATCCCAAGCGACAGAAGATGGTTTCTGATCTTGAAGCAAGAGAACGAGCTGCAAAGTTTGACAGGGATGCCAAAGTTAGACAAGAACAAGATGAGAGAATGAAGTGGAAGTTAGATGAAGAGTGTGCAAGATATCGTGCAATGCCTCAGAAGAGAGAGCCTGGGGGAGTTGGGAAGAAGGTGAATGGTGGTGTTGGGATAAGCCTGAGGTTAGAAGAAGAGAAGGTGATTAGAGTGCGTTGGGAAAAGTTTGGGGGTGAAGGTTATACAGCAAAAAGGTTGAGAGACTTGTTGTCCAAGTTTGGTGGAGTTAAAGACCTCATCCTTGGTTCAGGTTGTTTGGCTTTGGTTCTGATGGAGACTAGAGATGCAGCTGTTGCCGCAACAGGAGAGGTAGTTGGTGATCTTTCTAATCCGTTGAGGGTTTCGCTTTTTCAACCAGTTGCACCGAAGAGGATGGTAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

170

Amino Acids

19.24

Weight (kDa)

9.72

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23590 AT5G23590
fragaria_vesca	FvH4_2g15640 FvH4_2g15640 FvH4_2g15640 FvH4_5g36760
malus_domestica	MD05G1124900.v1.1
prunus_persica	Prupe.8G168900_v2.0.a1
pyrus_communis	pycom05g11900
rosa_chinensis	RchiOBHm_Chr6g0278841
rosa_laevigata	RLG00000000874 RLG00000000877 RLG00000013190
rosa_multiflora	Rmu_sc0004165.1_g000050 Rmu_sc0004380.1_g000008 Rmu_sc0007085.1_g000002 Rmu_sc0007085.1_g000005 Rmu_sc0024310.1_g000002 Rmu_sc0038395.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222310 Rroxscaffold_3G00222350 Rroxscaffold_3G00222370 Rroxscaffold_7G00189600
rosa_rugosa	Rorug06G0119500 Rorug06G0119600
rosa_samantha	Rh6AG228000 Rh6BG233700 Rh6CG236100 Rh6DG227300 Rh7AG472700 Rh7BG443000 Rh7CG489600 Rh7CG489700 Rh7CG489900 Rh7CG490000 Rh7DG458000 Rh7DG458100 Rh7DG458200 Rh7DG458300
rosa_wichuraiana	Rw6G020010 Rw7G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	45
AciI	CCGC	1 cut(s)	426
AclWI	GGATC	1 cut(s)	41
AgsI	TTSAA	2 cut(s)	80, 482
AhdI	GACNNNNNGTC	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	2 cut(s)	95, 419
AluI	AGCT	2 cut(s)	95, 419
Alw26I	GTCTC	2 cut(s)	324, 398
AlwI	GGATC	1 cut(s)	41
ApeKI	GCWGC	2 cut(s)	95, 416
AspLEI	GCGC	1 cut(s)	45
AsuHPI	GGTGA	4 cut(s)	238, 283, 314, 458
AxyI	CCTNAGG	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	82, 428
BccI	CCATC	4 cut(s)	20, 58, 394, 496
BciT130I	CCWGG	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	324, 398
BfaI	CTAG	1 cut(s)	408
BisI	GCNGC	3 cut(s)	96, 417, 426
BlsI	GCNGC	3 cut(s)	97, 418, 427
Bme1390I	CCNGG	1 cut(s)	207
BmeRI	GACNNNNNGTC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	2 cut(s)	103, 403
BsaJI	CCNNGG	2 cut(s)	206, 370
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bse1I	ACTGG	1 cut(s)	485
Bse21I	CCTNAGG	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	206, 370
BseGI	GGATG	3 cut(s)	118, 366, 507
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	206, 242
BseNI	ACTGG	1 cut(s)	485
BseXI	GCAGC	2 cut(s)	82, 428
Bsh1236I	CGCG	1 cut(s)	45
BsmAI	GTCTC	2 cut(s)	324, 398
Bsp143I	GATC	4 cut(s)	10, 46, 73, 448
BspACI	CCGC	1 cut(s)	426
BspCNI	CTCAG	2 cut(s)	205, 243
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	485
BssECI	CCNNGG	2 cut(s)	206, 370
BssMI	GATC	4 cut(s)	10, 46, 73, 448
BssT1I	CCWWGG	1 cut(s)	370
Bst2UI	CCWGG	1 cut(s)	207
Bst6I	CTCTTC	4 cut(s)	159, 191, 258, 491
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstDEI	CTNAG	3 cut(s)	5, 192, 251
BstF5I	GGATG	3 cut(s)	118, 366, 507
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	4 cut(s)	13, 49, 76, 451
BstMAI	GTCTC	2 cut(s)	324, 398
BstMBI	GATC	4 cut(s)	10, 46, 73, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 425
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	82, 428
Bsu36I	CCTNAGG	1 cut(s)	251
BtsCI	GGATG	3 cut(s)	118, 366, 507
CfoI	GCGC	1 cut(s)	45
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviJI	RGCY	5 cut(s)	95, 205, 249, 389, 419
CviKI_1	RGCY	5 cut(s)	95, 205, 249, 389, 419
DdeI	CTNAG	3 cut(s)	5, 192, 251
DpnI	GATC	4 cut(s)	12, 48, 75, 450
DpnII	GATC	4 cut(s)	10, 46, 73, 448
DriI	GACNNNNNGTC	1 cut(s)	337
Eam1104I	CTCTTC	4 cut(s)	159, 191, 258, 491
Eam1105I	GACNNNNNGTC	1 cut(s)	337
EarI	CTCTTC	4 cut(s)	159, 191, 258, 491
Eco130I	CCWWGG	1 cut(s)	370
Eco32I	GATATC	1 cut(s)	179
Eco81I	CCTNAGG	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	205
EcoRV	GATATC	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
FaiI	YATR	1 cut(s)	312
Fnu4HI	GCNGC	3 cut(s)	96, 417, 426
FokI	GGATG	2 cut(s)	125, 353
Fsp4HI	GCNGC	3 cut(s)	96, 417, 426
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	3 cut(s)	96, 417, 426
HhaI	GCGC	1 cut(s)	45
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HphI	GGTGA	4 cut(s)	238, 283, 314, 458
Hpy188I	TCNGA	5 cut(s)	40, 73, 195, 399, 512
Hpy188III	TCNNGA	1 cut(s)	77
HpyAV	CCTTC	3 cut(s)	217, 262, 299
HpyCH4V	TGCA	5 cut(s)	98, 173, 185, 416, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 425
HpyF3I	CTNAG	3 cut(s)	5, 192, 251
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	4 cut(s)	10, 46, 73, 448
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	7 cut(s)	94, 192, 219, 263, 363, 417, 498
Lsp1109I	GCAGC	2 cut(s)	82, 428
LweI	GCATC	2 cut(s)	103, 403
MaeI	CTAG	1 cut(s)	408
MalI	GATC	4 cut(s)	12, 48, 75, 450
MboI	GATC	4 cut(s)	10, 46, 73, 448
MboII	GAAGA	7 cut(s)	73, 176, 208, 232, 272, 275, 508
MnlI	CCTC	6 cut(s)	201, 246, 374, 430, 459, 492
MseI	TTAA	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	422, 425
NdeII	GATC	4 cut(s)	10, 46, 73, 448
NlaIV	GGNNCC	1 cut(s)	32
PkrI	GCNGC	3 cut(s)	97, 418, 427
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	419
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	3 cut(s)	96, 417, 426
Sau3AI	GATC	4 cut(s)	10, 46, 73, 448
ScrFI	CCNGG	1 cut(s)	207
SfaNI	GCATC	2 cut(s)	103, 403
SsiI	CCGC	1 cut(s)	426
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	370
TauI	GCSGC	1 cut(s)	428
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseI	GCWGC	2 cut(s)	95, 416
TspDTI	ATGAA	2 cut(s)	161, 177
TspGWI	ACGGA	1 cut(s)	450
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.