Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024310.1

Orthogroup ID

OG0002514

Physical Location & Seq

Genomic Coordinates Forward (+)

5621 .. 6304

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024310.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atggatatgaatgaagatcattatgaggttcttggtttaccatctggagaggaaggcgctaagcttacagagaaagagattacaaaggcatacagagtgaaggctttggtgttgcaccctgacaagcggccagatgatcctgatgccagtgtcaatttccaaaggctcaaatcatcgtatgagatactcaaggatgaaaaagccaggaaattgtttgatgagttgctcaaagttaagagacagcagaaacgccgccatttagaacgtgatgccaagcgacagaggatggtctctgatcttgaagcaagagaacgagctgcctttgctccagacgcagctgccaaagatagagaagaagaggagagaatttctaggaaacttgctgaagaggttgcgagaatacgtgcaatgcatgcaaataagggggcgcctactgcttcagttccaaaaaaagataatgggagagttgggaaggagagtgtgggtggtgctgagcaaggggtggataaggaaagggtgcttaaagttacatgggaaaaggttggtgaagattatacagcagagaggttgagaaacttgttctctgcgtttggtgaggttgaagatgttcttatcaagtctaagaagaaaggttcagccctggttgtaatggcaactaaagatgcagctgtaagtagggcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

227

Amino Acids

25.64

Weight (kDa)

9.28

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23590 AT5G23590
fragaria_vesca	FvH4_2g15640 FvH4_2g15640 FvH4_2g15640 FvH4_5g36760
malus_domestica	MD05G1124900.v1.1
prunus_persica	Prupe.8G168900_v2.0.a1
pyrus_communis	pycom05g11900
rosa_chinensis	RchiOBHm_Chr6g0278841
rosa_laevigata	RLG00000000874 RLG00000000877 RLG00000013190
rosa_multiflora	Rmu_sc0004165.1_g000050 Rmu_sc0004380.1_g000008 Rmu_sc0007085.1_g000002 Rmu_sc0007085.1_g000005 Rmu_sc0024310.1_g000002 Rmu_sc0038395.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222310 Rroxscaffold_3G00222350 Rroxscaffold_3G00222370 Rroxscaffold_7G00189600
rosa_rugosa	Rorug06G0119500 Rorug06G0119600
rosa_samantha	Rh6AG228000 Rh6BG233700 Rh6CG236100 Rh6DG227300 Rh7AG472700 Rh7BG443000 Rh7CG489600 Rh7CG489700 Rh7CG489900 Rh7CG490000 Rh7DG458000 Rh7DG458100 Rh7DG458200 Rh7DG458300
rosa_wichuraiana	Rw6G020010 Rw7G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	427
AciI	CCGC	2 cut(s)	127, 253
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	128
AcsI	RAATTY	1 cut(s)	366
AcuI	CTGAAG	2 cut(s)	405, 423
AcyI	GRCGYC	1 cut(s)	428
AgsI	TTSAA	2 cut(s)	302, 602
AjnI	CCWGG	2 cut(s)	203, 639
AluBI	AGCT	4 cut(s)	64, 317, 338, 668
AluI	AGCT	4 cut(s)	64, 317, 338, 668
Alw26I	GTCTC	2 cut(s)	232, 295
AlwI	GGATC	1 cut(s)	131
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	4 cut(s)	317, 335, 338, 665
ApoI	RAATTY	1 cut(s)	366
Asp700I	GAANNNNTTC	1 cut(s)	606
AspLEI	GCGC	2 cut(s)	59, 430
AsuHPI	GGTGA	2 cut(s)	557, 605
BanI	GGYRCC	1 cut(s)	427
BbvI	GCAGC	4 cut(s)	304, 325, 347, 677
BccI	CCATC	2 cut(s)	49, 280
BciT130I	CCWGG	2 cut(s)	205, 641
BcoDI	GTCTC	2 cut(s)	232, 295
BfaI	CTAG	1 cut(s)	372
BfoI	RGCGCY	2 cut(s)	60, 431
BisI	GCNGC	6 cut(s)	128, 253, 318, 336, 339, 666
BlpI	GCTNAGC	2 cut(s)	60, 492
BlsI	GCNGC	6 cut(s)	129, 254, 319, 337, 340, 667
Bme1390I	CCNGG	2 cut(s)	205, 641
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	2 cut(s)	205, 641
BmsI	GCATC	3 cut(s)	133, 259, 652
BpmI	CTGGAG	2 cut(s)	66, 312
Bpu1102I	GCTNAGC	2 cut(s)	60, 492
BpuEI	CTTGAG	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	404
BsaHI	GRCGYC	1 cut(s)	428
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	639
Bse1I	ACTGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	2 cut(s)	205, 641
BseDI	CCNNGG	1 cut(s)	639
BseGI	GGATG	2 cut(s)	199, 291
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	4 cut(s)	304, 325, 347, 677
BshFI	GGCC	1 cut(s)	130
BshNI	GGYRCC	1 cut(s)	427
BsmAI	GTCTC	2 cut(s)	232, 295
BsnI	GGCC	1 cut(s)	130
Bso31I	GGTCTC	1 cut(s)	295
Bsp143I	GATC	3 cut(s)	16, 136, 295
Bsp1720I	GCTNAGC	2 cut(s)	60, 492
BspACI	CCGC	2 cut(s)	127, 253
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	484
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	639
BssMI	GATC	3 cut(s)	16, 136, 295
BssNI	GRCGYC	1 cut(s)	428
Bst2UI	CCWGG	2 cut(s)	205, 641
Bst6I	CTCTTC	2 cut(s)	351, 381
BstACI	GRCGYC	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstBAI	YACGTR	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	3 cut(s)	60, 492, 621
BstF5I	GGATG	2 cut(s)	199, 291
BstH2I	RGCGCY	2 cut(s)	60, 431
BstHHI	GCGC	2 cut(s)	59, 430
BstKTI	GATC	3 cut(s)	19, 139, 298
BstMAI	GTCTC	2 cut(s)	232, 295
BstMBI	GATC	3 cut(s)	16, 136, 295
BstMWI	GCNNNNNNNGC	4 cut(s)	323, 332, 413, 434
BstNI	CCWGG	2 cut(s)	205, 641
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	203, 639
BstV1I	GCAGC	4 cut(s)	304, 325, 347, 677
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	199, 291
BtsIMutI	CAGTG	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	414
CfoI	GCGC	2 cut(s)	59, 430
CseI	GACGC	1 cut(s)	341
CviAII	CATG	2 cut(s)	413, 531
CviJI	RGCY	9 cut(s)	64, 104, 130, 166, 203, 317, 338, 638, 668
CviKI_1	RGCY	9 cut(s)	64, 104, 130, 166, 203, 317, 338, 638, 668
DdeI	CTNAG	3 cut(s)	60, 492, 621
DinI	GGCGCC	1 cut(s)	429
DpnI	GATC	3 cut(s)	18, 138, 297
DpnII	GATC	3 cut(s)	16, 136, 295
EaeI	YGGCCR	1 cut(s)	128
Eam1104I	CTCTTC	2 cut(s)	351, 381
EarI	CTCTTC	2 cut(s)	351, 381
Eco31I	GGTCTC	1 cut(s)	295
Eco57I	CTGAAG	2 cut(s)	405, 423
EcoRII	CCWGG	2 cut(s)	203, 639
EcoT22I	ATGCAT	1 cut(s)	414
EgeI	GGCGCC	1 cut(s)	429
EheI	GGCGCC	1 cut(s)	429
FaeI	CATG	2 cut(s)	416, 534
FaiI	YATR	8 cut(s)	8, 24, 91, 180, 414, 532, 555, 682
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FatI	CATG	2 cut(s)	412, 530
Fnu4HI	GCNGC	6 cut(s)	128, 253, 318, 336, 339, 666
FokI	GGATG	2 cut(s)	206, 298
Fsp4HI	GCNGC	6 cut(s)	128, 253, 318, 336, 339, 666
FspBI	CTAG	1 cut(s)	372
GlaI	GCGC	2 cut(s)	58, 429
GluI	GCNGC	6 cut(s)	128, 253, 318, 336, 339, 666
GsuI	CTGGAG	2 cut(s)	66, 312
HaeII	RGCGCY	2 cut(s)	60, 431
HaeIII	GGCC	1 cut(s)	130
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	2 cut(s)	59, 430
Hin1I	GRCGYC	1 cut(s)	428
Hin1II	CATG	2 cut(s)	416, 534
Hin6I	GCGC	2 cut(s)	57, 428
HinP1I	GCGC	2 cut(s)	57, 428
HindIII	AAGCTT	1 cut(s)	62
HphI	GGTGA	2 cut(s)	557, 605
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	4 cut(s)	45, 140, 299, 329
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	3 cut(s)	47, 94, 466
HpyCH4IV	ACGT	2 cut(s)	265, 403
HpyCH4V	TGCA	5 cut(s)	115, 407, 412, 416, 665
HpyF10VI	GCNNNNNNNGC	4 cut(s)	323, 332, 413, 434
HpyF3I	CTNAG	3 cut(s)	60, 492, 621
HpySE526I	ACGT	2 cut(s)	265, 403
Hsp92I	GRCGYC	1 cut(s)	428
Hsp92II	CATG	2 cut(s)	416, 534
HspAI	GCGC	2 cut(s)	57, 428
KasI	GGCGCC	1 cut(s)	427
Kzo9I	GATC	3 cut(s)	16, 136, 295
LmnI	GCTCC	1 cut(s)	331
Lsp1109I	GCAGC	4 cut(s)	304, 325, 347, 677
LweI	GCATC	3 cut(s)	133, 259, 652
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	2 cut(s)	265, 403
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	3 cut(s)	18, 138, 297
MboI	GATC	3 cut(s)	16, 136, 295
MboII	GAAGA	7 cut(s)	26, 365, 368, 398, 560, 614, 637
MluCI	AATT	3 cut(s)	154, 209, 366
Mly113I	GGCGCC	1 cut(s)	428
MnlI	CCTC	7 cut(s)	19, 43, 276, 352, 382, 558, 589
Mph1103I	ATGCAT	1 cut(s)	414
MroXI	GAANNNNTTC	1 cut(s)	606
MseI	TTAA	2 cut(s)	234, 522
MspA1I	CMGCKG	2 cut(s)	338, 668
MspR9I	CCNGG	2 cut(s)	205, 641
MvaI	CCWGG	2 cut(s)	205, 641
MwoI	GCNNNNNNNGC	4 cut(s)	323, 332, 413, 434
NarI	GGCGCC	1 cut(s)	428
NdeII	GATC	3 cut(s)	16, 136, 295
NlaIII	CATG	2 cut(s)	416, 534
NlaIV	GGNNCC	1 cut(s)	429
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	1 cut(s)	416
PaeI	GCATGC	1 cut(s)	416
PdmI	GAANNNNTTC	1 cut(s)	606
PkrI	GCNGC	6 cut(s)	129, 254, 319, 337, 340, 667
PluTI	GGCGCC	1 cut(s)	431
Ppu21I	YACGTR	1 cut(s)	404
Psp6I	CCWGG	2 cut(s)	203, 639
PspGI	CCWGG	2 cut(s)	203, 639
PspN4I	GGNNCC	1 cut(s)	429
PvuII	CAGCTG	2 cut(s)	338, 668
SaqAI	TTAA	2 cut(s)	234, 522
SatI	GCNGC	6 cut(s)	128, 253, 318, 336, 339, 666
Sau3AI	GATC	3 cut(s)	16, 136, 295
ScrFI	CCNGG	2 cut(s)	205, 641
SfaNI	GCATC	3 cut(s)	133, 259, 652
SfoI	GGCGCC	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SphI	GCATGC	1 cut(s)	416
Sse9I	AATT	3 cut(s)	154, 209, 366
SsiI	CCGC	2 cut(s)	127, 253
SspDI	GGCGCC	1 cut(s)	427
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	2 cut(s)	203, 639
TaiI	ACGT	2 cut(s)	268, 406
TasI	AATT	3 cut(s)	154, 209, 366
TauI	GCSGC	2 cut(s)	130, 255
Tru1I	TTAA	2 cut(s)	234, 522
Tru9I	TTAA	2 cut(s)	234, 522
TscAI	CASTG	1 cut(s)	154
TseI	GCWGC	4 cut(s)	317, 335, 338, 665
TspDTI	ATGAA	3 cut(s)	23, 27, 210
TspRI	CASTG	1 cut(s)	154
XapI	RAATTY	1 cut(s)	366
XceI	RCATGY	1 cut(s)	416
XmnI	GAANNNNTTC	1 cut(s)	606
XspI	CTAG	1 cut(s)	372
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.