Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002514

Physical Location & Seq

Genomic Coordinates Reverse (-)

65110869 .. 65114770

Gene Structure 3902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG458100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTCCGGAAAAGAAAAGAGTCATGCAATAGGGATTGACCTGGGGACGACTTACTCGTGCGTGGCGGTTTGGCAGCACGAACATGTAGAAATCATAGTGAATGATCAGGGAAACAGGACTACTCCATCTTATGTTGCCTTCACTGATACTGATAAATTGATCGGCGATGCAGCGTTTAACCAGATCATCAAAAATCCCACCAATTCCGTATTTGACGAAGATCATTATAAGGTTCTTGGTTTGCCGTCCGGCGAGGAAGGCTCTAAGCTCACAGAGAAACAGATTACAAAGGCTTACCACGCAAAAGCCTTGGTGTTGCACCCGGACAAGAGGCCTAAAAGTGATCTCCAAGCCAATACCAACTTCCAAAGGCTCAAAAGTTCCTATGAGGTTCTCAAGAATGAAAGTTCCCGCAAAGTGTTCGACAAAATGCTTAGAGATCAAAGACAGAAAGATGGGAACCATTCGGAGCGCGATCCCAAGCGACAGAAGATGGTTTCTGATCTTGAAGCAAGAGAACGAGCTGCAAAGTTTGACAGGGATGCCAAAGTTAGACAAGAACAAGATGAGAGAATGAAGTGGAAGTTAGATCAAGAGTCTGCAAGATATCGTGCAATGTCTCAGAAGAGAGAGCCTGGGGGAGTTGGGAAGAAGGTGAATGGTGGTGTTGGGATAAGCCTGAGGTTAGAAGAAGAGAAGGTGATTAGAGTGCGTTGGGAAAAGTTTGAGGGTGAAGGCTATACAGCAAAAAGGTTGAGAGACTTGTTGTCCAAGTTTGGTGGAGTTAAAGACCTCATCCTTGGTTCAGGTTGTTTGGCTTTGGTTCTGATGGAGACTAGAGATGCAGCTGTTGCCGCAACAGGAGAGGTAATTGGTGATCTTTCTAATCCGTTGAGGGTTTCGCTTTTTCAACCGGTCGCACCGAAGAGGATGGTGGCTCCGACAGCTGAGAAGTCTGATGAACCTGATCGAGTTAATAATTTGGTTGGGGTTGGCTTTCGAACATTTGAAGATGATGTTTTAAAAGAAGGTTGCACAGGCTGGGCAGAAGCAAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

353

Amino Acids

39.63

Weight (kDa)

8.86

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	9 - 73	1.8e-24	Hsp70 protein
DnaJ	PF00226	74 - 142	8e-15	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23590 AT5G23590
fragaria_vesca	FvH4_2g15640 FvH4_2g15640 FvH4_2g15640 FvH4_5g36760
malus_domestica	MD05G1124900.v1.1
prunus_persica	Prupe.8G168900_v2.0.a1
pyrus_communis	pycom05g11900
rosa_chinensis	RchiOBHm_Chr6g0278841
rosa_laevigata	RLG00000000874 RLG00000000877 RLG00000013190
rosa_multiflora	Rmu_sc0004165.1_g000050 Rmu_sc0004380.1_g000008 Rmu_sc0007085.1_g000002 Rmu_sc0007085.1_g000005 Rmu_sc0024310.1_g000002 Rmu_sc0038395.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222310 Rroxscaffold_3G00222350 Rroxscaffold_3G00222370 Rroxscaffold_7G00189600
rosa_rugosa	Rorug06G0119500 Rorug06G0119600
rosa_samantha	Rh6AG228000 Rh6BG233700 Rh6CG236100 Rh6DG227300 Rh7AG472700 Rh7BG443000 Rh7CG489600 Rh7CG489700 Rh7CG489900 Rh7CG490000 Rh7DG458000 Rh7DG458100 Rh7DG458200 Rh7DG458300
rosa_wichuraiana	Rw6G020010 Rw7G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AccII	CGCG	1 cut(s)	474
AccIII	TCCGGA	1 cut(s)	5
AciI	CCGC	3 cut(s)	65, 412, 855
AclWI	GGATC	1 cut(s)	470
AflIII	ACRYGT	1 cut(s)	82
AgeI	ACCGGT	1 cut(s)	913
AgsI	TTSAA	3 cut(s)	509, 911, 1010
AhdI	GACNNNNNGTC	1 cut(s)	766
AjnI	CCWGG	2 cut(s)	39, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AluBI	AGCT	4 cut(s)	268, 524, 848, 947
AluI	AGCT	4 cut(s)	268, 524, 848, 947
Alw26I	GTCTC	3 cut(s)	624, 753, 827
AlwI	GGATC	1 cut(s)	470
Aor13HI	TCCGGA	1 cut(s)	5
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	4 cut(s)	73, 170, 524, 845
AsiGI	ACCGGT	1 cut(s)	913
AspLEI	GCGC	1 cut(s)	474
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	4 cut(s)	667, 712, 743, 887
AsuII	TTCGAA	1 cut(s)	1000
AxyI	CCTNAGG	1 cut(s)	680
BauI	CACGAG	1 cut(s)	55
BbvI	GCAGC	4 cut(s)	85, 182, 511, 857
BccI	CCATC	5 cut(s)	133, 449, 487, 823, 925
BceAI	ACGGC	1 cut(s)	229
BcgI	CGANNNNNNTGC	2 cut(s)	403, 437
BciT130I	CCWGG	2 cut(s)	41, 636
BclI	TGATCA	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	3 cut(s)	624, 753, 827
BfaI	CTAG	1 cut(s)	837
BisI	GCNGC	5 cut(s)	74, 171, 525, 846, 855
BlsI	GCNGC	5 cut(s)	75, 172, 526, 847, 856
Bme1390I	CCNGG	3 cut(s)	41, 323, 636
BmeRI	GACNNNNNGTC	1 cut(s)	766
BmiI	GGNNCC	2 cut(s)	461, 939
BmrFI	CCNGG	3 cut(s)	41, 323, 636
BmsI	GCATC	3 cut(s)	157, 532, 832
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
Bpu14I	TTCGAA	1 cut(s)	1000
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	323
BsaJI	CCNNGG	4 cut(s)	40, 309, 635, 799
BsaWI	WCCGGW	2 cut(s)	5, 913
Bse118I	RCCGGY	1 cut(s)	913
Bse21I	CCTNAGG	1 cut(s)	680
Bse3DI	GCAATG	1 cut(s)	621
BseAI	TCCGGA	1 cut(s)	5
BseBI	CCWGG	2 cut(s)	41, 636
BseDI	CCNNGG	4 cut(s)	40, 309, 635, 799
BseGI	GGATG	3 cut(s)	547, 795, 936
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	3 cut(s)	635, 671, 939
BseXI	GCAGC	4 cut(s)	85, 182, 511, 857
BseYI	CCCAGC	1 cut(s)	1041
Bsh1236I	CGCG	1 cut(s)	474
Bsh1285I	CGRYCG	1 cut(s)	918
BshFI	GGCC	1 cut(s)	334
BshTI	ACCGGT	1 cut(s)	913
BsiEI	CGRYCG	1 cut(s)	918
BsiSI	CCGG	4 cut(s)	6, 249, 323, 914
BslFI	GGGAC	1 cut(s)	58
BsmAI	GTCTC	3 cut(s)	624, 753, 827
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	334
Bsp119I	TTCGAA	1 cut(s)	1000
Bsp13I	TCCGGA	1 cut(s)	5
BspACI	CCGC	3 cut(s)	65, 412, 855
BspANI	GGCC	1 cut(s)	334
BspCNI	CTCAG	3 cut(s)	634, 672, 940
BspEI	TCCGGA	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	474
BspLI	GGNNCC	2 cut(s)	461, 939
BspPI	GGATC	1 cut(s)	470
BspT104I	TTCGAA	1 cut(s)	1000
BsrDI	GCAATG	1 cut(s)	621
BsrFI	RCCGGY	1 cut(s)	913
BssAI	RCCGGY	1 cut(s)	913
BssECI	CCNNGG	4 cut(s)	40, 309, 635, 799
BssSI	CACGAG	1 cut(s)	55
BssT1I	CCWWGG	2 cut(s)	309, 799
Bst2BI	CACGAG	1 cut(s)	55
Bst2UI	CCWGG	2 cut(s)	41, 636
Bst6I	CTCTTC	3 cut(s)	620, 687, 920
BstAPI	GCANNNNNTGC	1 cut(s)	851
BstBI	TTCGAA	1 cut(s)	1000
BstDEI	CTNAG	5 cut(s)	264, 434, 621, 680, 948
BstF5I	GGATG	3 cut(s)	547, 795, 936
BstFNI	CGCG	1 cut(s)	474
BstHHI	GCGC	1 cut(s)	474
BstMAI	GTCTC	3 cut(s)	624, 753, 827
BstMCI	CGRYCG	1 cut(s)	918
BstMWI	GCNNNNNNNGC	5 cut(s)	258, 299, 851, 854, 944
BstNI	CCWGG	2 cut(s)	41, 636
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	3 cut(s)	39, 321, 634
BstUI	CGCG	1 cut(s)	474
BstV1I	GCAGC	4 cut(s)	85, 182, 511, 857
Bsu36I	CCTNAGG	1 cut(s)	680
BsuRI	GGCC	1 cut(s)	334
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	547, 795, 936
BtsIMutI	CAGTG	1 cut(s)	141
CfoI	GCGC	1 cut(s)	474
Cfr10I	RCCGGY	1 cut(s)	913
CspAI	ACCGGT	1 cut(s)	913
CspCI	CAANNNNNGTGG	2 cut(s)	760, 795
CviAII	CATG	2 cut(s)	23, 83
DdeI	CTNAG	5 cut(s)	264, 434, 621, 680, 948
DraI	TTTAAA	1 cut(s)	1023
DriI	GACNNNNNGTC	1 cut(s)	766
Eam1104I	CTCTTC	3 cut(s)	620, 687, 920
Eam1105I	GACNNNNNGTC	1 cut(s)	766
EarI	CTCTTC	3 cut(s)	620, 687, 920
Eco130I	CCWWGG	2 cut(s)	309, 799
Eco147I	AGGCCT	1 cut(s)	334
Eco32I	GATATC	1 cut(s)	608
Eco81I	CCTNAGG	1 cut(s)	680
EcoRII	CCWGG	2 cut(s)	39, 634
EcoRV	GATATC	1 cut(s)	608
EcoT14I	CCWWGG	2 cut(s)	309, 799
ErhI	CCWWGG	2 cut(s)	309, 799
FaeI	CATG	2 cut(s)	26, 86
FaiI	YATR	7 cut(s)	24, 84, 95, 132, 228, 387, 741
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	2 cut(s)	22, 82
FauI	CCCGC	1 cut(s)	419
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	5 cut(s)	74, 171, 525, 846, 855
FokI	GGATG	3 cut(s)	554, 782, 943
Fsp4HI	GCNGC	5 cut(s)	74, 171, 525, 846, 855
FspBI	CTAG	1 cut(s)	837
GlaI	GCGC	1 cut(s)	473
GluI	GCNGC	5 cut(s)	74, 171, 525, 846, 855
GsaI	CCCAGC	1 cut(s)	1045
HaeIII	GGCC	1 cut(s)	334
HapII	CCGG	4 cut(s)	6, 249, 323, 914
HhaI	GCGC	1 cut(s)	474
Hin1II	CATG	2 cut(s)	26, 86
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HinfI	GANTC	2 cut(s)	19, 596
HpaII	CCGG	4 cut(s)	6, 249, 323, 914
HphI	GGTGA	4 cut(s)	667, 712, 743, 887
Hpy188I	TCNGA	6 cut(s)	469, 502, 624, 828, 942, 958
Hpy188III	TCNNGA	4 cut(s)	6, 397, 506, 593
HpyAV	CCTTC	6 cut(s)	148, 251, 646, 691, 728, 1022
HpyCH4V	TGCA	8 cut(s)	26, 170, 319, 527, 602, 614, 845, 1035
HpyF10VI	GCNNNNNNNGC	5 cut(s)	258, 299, 851, 854, 944
HpyF3I	CTNAG	5 cut(s)	264, 434, 621, 680, 948
Hsp92II	CATG	2 cut(s)	26, 86
HspAI	GCGC	1 cut(s)	472
Kpn2I	TCCGGA	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	103
LmnI	GCTCC	2 cut(s)	469, 943
Lsp1109I	GCAGC	4 cut(s)	85, 182, 511, 857
LweI	GCATC	3 cut(s)	157, 532, 832
MaeI	CTAG	1 cut(s)	837
MboII	GAAGA	8 cut(s)	230, 502, 637, 661, 701, 704, 937, 1022
MluCI	AATT	4 cut(s)	155, 202, 870, 979
MlyI	GAGTC	2 cut(s)	28, 605
MmeI	TCCRAC	1 cut(s)	965
MnlI	CCTC	9 cut(s)	247, 324, 382, 675, 721, 803, 859, 888, 921
MroI	TCCGGA	1 cut(s)	5
MseI	TTAA	4 cut(s)	177, 786, 975, 1022
MslI	CAYNNNNRTG	1 cut(s)	81
MspA1I	CMGCKG	2 cut(s)	848, 947
MspI	CCGG	4 cut(s)	6, 249, 323, 914
MspR9I	CCNGG	3 cut(s)	41, 323, 636
MvaI	CCWGG	2 cut(s)	41, 636
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	5 cut(s)	258, 299, 851, 854, 944
NciI	CCSGG	1 cut(s)	323
NlaIII	CATG	2 cut(s)	26, 86
NlaIV	GGNNCC	2 cut(s)	461, 939
NspI	RCATGY	1 cut(s)	86
NspV	TTCGAA	1 cut(s)	1000
PceI	AGGCCT	1 cut(s)	334
PciI	ACATGT	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PinAI	ACCGGT	1 cut(s)	913
PkrI	GCNGC	5 cut(s)	75, 172, 526, 847, 856
PleI	GAGTC	2 cut(s)	27, 604
PpsI	GAGTC	2 cut(s)	27, 604
PscI	ACATGT	1 cut(s)	82
PsiI	TTATAA	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	39, 634
PspFI	CCCAGC	1 cut(s)	1041
PspGI	CCWGG	2 cut(s)	39, 634
PspN4I	GGNNCC	2 cut(s)	461, 939
PvuII	CAGCTG	2 cut(s)	848, 947
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	4 cut(s)	177, 786, 975, 1022
SatI	GCNGC	5 cut(s)	74, 171, 525, 846, 855
SchI	GAGTC	2 cut(s)	28, 605
ScrFI	CCNGG	3 cut(s)	41, 323, 636
SfaNI	GCATC	3 cut(s)	157, 532, 832
SfuI	TTCGAA	1 cut(s)	1000
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	4 cut(s)	155, 202, 870, 979
SseBI	AGGCCT	1 cut(s)	334
SsiI	CCGC	3 cut(s)	65, 412, 855
SspMI	CTAG	1 cut(s)	837
StuI	AGGCCT	1 cut(s)	334
StyD4I	CCNGG	3 cut(s)	39, 321, 634
StyI	CCWWGG	2 cut(s)	309, 799
TaqI	TCGA	3 cut(s)	423, 970, 1000
TasI	AATT	4 cut(s)	155, 202, 870, 979
TauI	GCSGC	1 cut(s)	857
Tru1I	TTAA	4 cut(s)	177, 786, 975, 1022
Tru9I	TTAA	4 cut(s)	177, 786, 975, 1022
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	4 cut(s)	73, 170, 524, 845
TspDTI	ATGAA	3 cut(s)	417, 590, 975
TspGWI	ACGGA	2 cut(s)	196, 879
TspRI	CASTG	1 cut(s)	148
XceI	RCATGY	1 cut(s)	86
XspI	CTAG	1 cut(s)	837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.