Rroxscaffold_3G00222350

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002514
Physical Location & Seq
Forward (+)
5371948 .. 5372824
877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00222350.1

Sequence Viewer

Length: 768 bp
ATGAATAAGACTATAGACGATAACCATTATAAGGTTCTTGGTTTGCCTTCCGGTGAGAAAGGCTCCAAGTTCACAGAGAAACAGATTGCGAAGGCTTACCACGCAAAGGCTTTGGTGTTGCACCCGGACAAGAGGCCTAAAAGTGATCTCCAAGCCAACACCAATTTCCAAAGGCTCAAAAGATCCTATGAGGTTCTCAAAAACGAAAGGGCCCGCAAAGTGTTTGACAAAATCCTTAGAGATCAAAGACAGAAGGATGGTCGCCGTTTGGAGCGCAATCCCAAGCGACAGAAGATGGTTTCTGATCTTGAAGCCAGAGAACGAGCTGCAAAGTTTGACAGGGATGCCAAAGTTAGACAAGAACGAGATGAGAGAATGAAGAGGAAGTTGGATGAAGAGTGTGCAAGATATCGTGCAATGCCTCAGAAGAGAGAGACTGGGGGAGTTGGGAAGAAGGTGAATGGTGGTGTTGGGATAAGCCTGAGGTTAAGAAGAGAAGGTTGTTTGGCTTTGGTTCTGATGGAGACTAGAGATGCAGCTGTTGCTGCAACAGGAGCGGTAATTGGTGATCTTTCTAATCCTTTGGTGGTTTCACTTTTTCAACCAGTTGTACCGAAGATGACAGTGTCTCCGACAGCTGAGAAGTATGATGAACCTGATCGAATGAATCATATGGTCGGGGTTGGCTTTCGAACATTTGAAGATGATGTTTTAAAGAAGGTTGCACAGGCTGGGCAGAAGCAAAAACTTGATAGACAAGGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

255

Amino Acids

29.06

Weight (kDa)

10.04

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 8 - 76 1.5e-14 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 30
AccBSI CCGCTC 1 cut(s) 557
AciI CCGC 2 cut(s) 214, 557
AclWI GGATC 1 cut(s) 177
AfaI GTAC 1 cut(s) 612
AfiI CCNNNNNNNGG 2 cut(s) 31, 106
AgsI TTSAA 3 cut(s) 311, 602, 701
AjuI GAANNNNNNNTTGG 4 cut(s) 149, 181, 371, 403
AluBI AGCT 3 cut(s) 326, 539, 638
AluI AGCT 3 cut(s) 326, 539, 638
Alw26I GTCTC 3 cut(s) 428, 518, 633
AlwI GGATC 1 cut(s) 177
AoxI GGCC 2 cut(s) 134, 210
ApaI GGGCCC 1 cut(s) 214
ApeKI GCWGC 3 cut(s) 326, 536, 545
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 2 cut(s) 210, 211
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 3 cut(s) 65, 469, 578
AsuII TTCGAA 1 cut(s) 691
AxyI CCTNAGG 1 cut(s) 482
BaeGI GKGCMC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 214
BbvI GCAGC 3 cut(s) 313, 532, 548
BccI CCATC 3 cut(s) 251, 289, 514
BceAI ACGGC 1 cut(s) 249
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 3 cut(s) 428, 518, 633
BfaI CTAG 1 cut(s) 528
BfmI CTRYAG 1 cut(s) 12
BisI GCNGC 3 cut(s) 327, 537, 546
BlsI GCNGC 3 cut(s) 328, 538, 547
Bme1390I CCNGG 1 cut(s) 125
BmgT120I GGNCC 2 cut(s) 210, 211
BmiI GGNNCC 2 cut(s) 64, 212
BmrFI CCNGG 1 cut(s) 125
BmrI ACTGGG 1 cut(s) 447
BmsI GCATC 2 cut(s) 334, 523
BmuI ACTGGG 1 cut(s) 447
BplI GAGNNNNNCTC 2 cut(s) 47, 79
Bpu14I TTCGAA 1 cut(s) 691
BpuMI CCSGG 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 613, 643
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 106
Bse1I ACTGG 2 cut(s) 442, 605
Bse21I CCTNAGG 1 cut(s) 482
Bse3DI GCAATG 1 cut(s) 423
BseGI GGATG 3 cut(s) 262, 349, 397
BseLI CCNNNNNNNGG 2 cut(s) 31, 106
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 3 cut(s) 437, 473, 630
BseNI ACTGG 2 cut(s) 442, 605
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 3 cut(s) 313, 532, 548
BseYI CCCAGC 1 cut(s) 731
BshFI GGCC 2 cut(s) 136, 212
BsiSI CCGG 2 cut(s) 51, 125
BslI CCNNNNNNNGG 2 cut(s) 31, 106
BsmAI GTCTC 3 cut(s) 428, 518, 633
BsnI GGCC 2 cut(s) 136, 212
Bsp119I TTCGAA 1 cut(s) 691
Bsp120I GGGCCC 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 6 cut(s) 145, 182, 241, 304, 568, 658
BspACI CCGC 2 cut(s) 214, 557
BspANI GGCC 2 cut(s) 136, 212
BspCNI CTCAG 3 cut(s) 436, 474, 631
BspLI GGNNCC 2 cut(s) 64, 212
BspPI GGATC 1 cut(s) 177
BspT104I TTCGAA 1 cut(s) 691
BsrBI CCGCTC 1 cut(s) 557
BsrDI GCAATG 1 cut(s) 423
BsrI ACTGG 2 cut(s) 442, 605
BssMI GATC 6 cut(s) 145, 182, 241, 304, 568, 658
Bst4CI ACNGT 1 cut(s) 625
Bst6I CTCTTC 4 cut(s) 374, 390, 422, 487
BstAPI GCANNNNNTGC 1 cut(s) 542
BstBI TTCGAA 1 cut(s) 691
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 4 cut(s) 236, 423, 482, 639
BstF5I GGATG 3 cut(s) 262, 349, 397
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 6 cut(s) 148, 185, 244, 307, 571, 661
BstMAI GTCTC 3 cut(s) 428, 518, 633
BstMBI GATC 6 cut(s) 145, 182, 241, 304, 568, 658
BstMWI GCNNNNNNNGC 4 cut(s) 101, 542, 545, 554
BstSCI CCNGG 1 cut(s) 123
BstSFI CTRYAG 1 cut(s) 12
BstSLI GKGCMC 1 cut(s) 214
BstV1I GCAGC 3 cut(s) 313, 532, 548
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
Bsu36I CCTNAGG 1 cut(s) 482
BsuRI GGCC 2 cut(s) 136, 212
BtsCI GGATG 3 cut(s) 262, 349, 397
BtsIMutI CAGTG 1 cut(s) 630
Cac8I GCNNGC 1 cut(s) 214
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 2 cut(s) 210, 211
Csp6I GTAC 1 cut(s) 611
CviQI GTAC 1 cut(s) 611
DdeI CTNAG 4 cut(s) 236, 423, 482, 639
DpnI GATC 6 cut(s) 147, 184, 243, 306, 570, 660
DpnII GATC 6 cut(s) 145, 182, 241, 304, 568, 658
DraI TTTAAA 1 cut(s) 714
Eam1104I CTCTTC 4 cut(s) 374, 390, 422, 487
EarI CTCTTC 4 cut(s) 374, 390, 422, 487
Eco147I AGGCCT 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 214
Eco32I GATATC 1 cut(s) 410
Eco81I CCTNAGG 1 cut(s) 482
EcoO109I RGGNCCY 1 cut(s) 210
EcoRV GATATC 1 cut(s) 410
EcoT38I GRGCYC 1 cut(s) 214
FaiI YATR 7 cut(s) 14, 30, 189, 648, 672, 674, 766
FauI CCCGC 1 cut(s) 221
FauNDI CATATG 1 cut(s) 672
Fnu4HI GCNGC 3 cut(s) 327, 537, 546
FokI GGATG 3 cut(s) 269, 356, 404
FriOI GRGCYC 1 cut(s) 214
Fsp4HI GCNGC 3 cut(s) 327, 537, 546
FspBI CTAG 1 cut(s) 528
GlaI GCGC 1 cut(s) 275
GluI GCNGC 3 cut(s) 327, 537, 546
GsaI CCCAGC 1 cut(s) 735
HaeIII GGCC 2 cut(s) 136, 212
HapII CCGG 2 cut(s) 51, 125
HhaI GCGC 1 cut(s) 276
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HinfI GANTC 1 cut(s) 667
HpaII CCGG 2 cut(s) 51, 125
HphI GGTGA 3 cut(s) 65, 469, 578
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 4 cut(s) 304, 426, 519, 633
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 6 cut(s) 57, 85, 247, 448, 491, 712
HpyCH4III ACNGT 1 cut(s) 625
HpyCH4V TGCA 8 cut(s) 121, 329, 404, 416, 536, 548, 725, 764
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 542, 545, 554
HpyF3I CTNAG 4 cut(s) 236, 423, 482, 639
HspAI GCGC 1 cut(s) 274
Kzo9I GATC 6 cut(s) 145, 182, 241, 304, 568, 658
LmnI GCTCC 3 cut(s) 68, 271, 554
Lsp1109I GCAGC 3 cut(s) 313, 532, 548
LweI GCATC 2 cut(s) 334, 523
MaeI CTAG 1 cut(s) 528
MalI GATC 6 cut(s) 147, 184, 243, 306, 570, 660
MbiI CCGCTC 1 cut(s) 557
MboI GATC 6 cut(s) 145, 182, 241, 304, 568, 658
MboII GAAGA 8 cut(s) 304, 391, 407, 439, 463, 504, 628, 713
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 2 cut(s) 163, 561
MmeI TCCRAC 2 cut(s) 369, 656
MnlI CCTC 5 cut(s) 126, 184, 375, 432, 477
MseI TTAA 2 cut(s) 488, 713
MspA1I CMGCKG 2 cut(s) 539, 638
MspI CCGG 2 cut(s) 51, 125
MspR9I CCNGG 1 cut(s) 125
MwoI GCNNNNNNNGC 4 cut(s) 101, 542, 545, 554
NciI CCSGG 1 cut(s) 125
NdeI CATATG 1 cut(s) 672
NdeII GATC 6 cut(s) 145, 182, 241, 304, 568, 658
NlaIV GGNNCC 2 cut(s) 64, 212
NspV TTCGAA 1 cut(s) 691
PceI AGGCCT 1 cut(s) 136
PfeI GAWTC 1 cut(s) 667
PflFI GACNNNGTC 1 cut(s) 625
PkrI GCNGC 3 cut(s) 328, 538, 547
PsiI TTATAA 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 731
PspN4I GGNNCC 2 cut(s) 64, 212
PspOMI GGGCCC 1 cut(s) 210
PspPI GGNCC 2 cut(s) 210, 211
PsuI RGATCY 1 cut(s) 182
PsyI GACNNNGTC 1 cut(s) 625
PvuII CAGCTG 2 cut(s) 539, 638
RsaI GTAC 1 cut(s) 612
RsaNI GTAC 1 cut(s) 611
SaqAI TTAA 2 cut(s) 488, 713
SatI GCNGC 3 cut(s) 327, 537, 546
Sau3AI GATC 6 cut(s) 145, 182, 241, 304, 568, 658
Sau96I GGNCC 2 cut(s) 210, 211
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 1 cut(s) 214
SfaNI GCATC 2 cut(s) 334, 523
SfcI CTRYAG 1 cut(s) 12
SfuI TTCGAA 1 cut(s) 691
Sse9I AATT 2 cut(s) 163, 561
SseBI AGGCCT 1 cut(s) 136
SsiI CCGC 2 cut(s) 214, 557
SspMI CTAG 1 cut(s) 528
StuI AGGCCT 1 cut(s) 136
StyD4I CCNGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 625
TaqI TCGA 2 cut(s) 661, 691
TasI AATT 2 cut(s) 163, 561
TfiI GAWTC 1 cut(s) 667
Tru1I TTAA 2 cut(s) 488, 713
Tru9I TTAA 2 cut(s) 488, 713
TscAI CASTG 1 cut(s) 630
TseI GCWGC 3 cut(s) 326, 536, 545
TspDTI ATGAA 5 cut(s) 17, 392, 408, 666, 680
TspRI CASTG 1 cut(s) 630
Tth111I GACNNNGTC 1 cut(s) 625
XspI CTAG 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.