Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002514

Physical Location & Seq

Genomic Coordinates Reverse (-)

65828418 .. 65829050

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG489700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCTTAGAGATCAAAGACAGAAAGATGGGAACCATTCGGAGCGCGATCCCAAGCGACAGAAGATGGTTTCTGATCTTGAAGCAAGAGAACGAGCTGCAAAGTTTGACAGGGATGCCAAAGTTAGACAAGAACAAGATGAGAGAATGAAGTGGAAGTTAGATCAAGAGTCTGCAAGATATCGTGCAATGTCTCAGAAGAGAGAGCCTGGGGGAGTTGGGAAGAAGGTGAATGGTGGTGTTGGGATAAGCCTGAGGTTAGAAGAAGAGAAGGTGATTAGAGTGCGTTGGGAAAAGTTTGAGGGTGAAGGCTATACAGCAAAAAGGTTGAGAGACTTGTTGTCCAAGTTTGGTGGAGTTAAAGACCTCATCCTTGGTTCAGGTTGTTTGGCTTTGGTTCTGATGGAGACTAGAGATGCAGCTGTTGCCGCAACAGGAGAGGTAATTGGTGATCTTTCTAATCCGTTGAGGGTTTCGCTTTTTCAACCGGTCGCACCGAAGAGGATGGTGGCTCCGACAGCTGAGAAGTCTGATGAACCTGATCGAGTTAATAATTTGGTTGGGGTTGGCTTTCGAACATTTGAAGATGATGTTTTAAAAGAAGGTTGCACAGGCTGGGCAGAAGCAAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

210

Amino Acids

23.63

Weight (kDa)

9.18

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23590 AT5G23590
fragaria_vesca	FvH4_2g15640 FvH4_2g15640 FvH4_2g15640 FvH4_5g36760
malus_domestica	MD05G1124900.v1.1
prunus_persica	Prupe.8G168900_v2.0.a1
pyrus_communis	pycom05g11900
rosa_chinensis	RchiOBHm_Chr6g0278841
rosa_laevigata	RLG00000000874 RLG00000000877 RLG00000013190
rosa_multiflora	Rmu_sc0004165.1_g000050 Rmu_sc0004380.1_g000008 Rmu_sc0007085.1_g000002 Rmu_sc0007085.1_g000005 Rmu_sc0024310.1_g000002 Rmu_sc0038395.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222310 Rroxscaffold_3G00222350 Rroxscaffold_3G00222370 Rroxscaffold_7G00189600
rosa_rugosa	Rorug06G0119500 Rorug06G0119600
rosa_samantha	Rh6AG228000 Rh6BG233700 Rh6CG236100 Rh6DG227300 Rh7AG472700 Rh7BG443000 Rh7CG489600 Rh7CG489700 Rh7CG489900 Rh7CG490000 Rh7DG458000 Rh7DG458100 Rh7DG458200 Rh7DG458300
rosa_wichuraiana	Rw6G020010 Rw7G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	45
AciI	CCGC	1 cut(s)	426
AclWI	GGATC	1 cut(s)	41
AgeI	ACCGGT	1 cut(s)	484
AgsI	TTSAA	3 cut(s)	80, 482, 581
AhdI	GACNNNNNGTC	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	3 cut(s)	95, 419, 518
AluI	AGCT	3 cut(s)	95, 419, 518
Alw26I	GTCTC	3 cut(s)	195, 324, 398
AlwI	GGATC	1 cut(s)	41
ApeKI	GCWGC	2 cut(s)	95, 416
AsiGI	ACCGGT	1 cut(s)	484
AspLEI	GCGC	1 cut(s)	45
AsuHPI	GGTGA	4 cut(s)	238, 283, 314, 458
AsuII	TTCGAA	1 cut(s)	571
AxyI	CCTNAGG	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	82, 428
BccI	CCATC	4 cut(s)	20, 58, 394, 496
BciT130I	CCWGG	1 cut(s)	207
BcoDI	GTCTC	3 cut(s)	195, 324, 398
BfaI	CTAG	1 cut(s)	408
BisI	GCNGC	3 cut(s)	96, 417, 426
BlsI	GCNGC	3 cut(s)	97, 418, 427
Bme1390I	CCNGG	1 cut(s)	207
BmeRI	GACNNNNNGTC	1 cut(s)	337
BmiI	GGNNCC	2 cut(s)	32, 510
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	2 cut(s)	103, 403
Bpu14I	TTCGAA	1 cut(s)	571
BsaJI	CCNNGG	2 cut(s)	206, 370
BsaWI	WCCGGW	1 cut(s)	484
Bse118I	RCCGGY	1 cut(s)	484
Bse21I	CCTNAGG	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	206, 370
BseGI	GGATG	3 cut(s)	118, 366, 507
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	3 cut(s)	206, 242, 510
BseXI	GCAGC	2 cut(s)	82, 428
BseYI	CCCAGC	1 cut(s)	612
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	489
BshTI	ACCGGT	1 cut(s)	484
BsiEI	CGRYCG	1 cut(s)	489
BsiSI	CCGG	1 cut(s)	485
BsmAI	GTCTC	3 cut(s)	195, 324, 398
Bsp119I	TTCGAA	1 cut(s)	571
Bsp143I	GATC	6 cut(s)	10, 46, 73, 160, 448, 538
BspACI	CCGC	1 cut(s)	426
BspCNI	CTCAG	3 cut(s)	205, 243, 511
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	2 cut(s)	32, 510
BspPI	GGATC	1 cut(s)	41
BspT104I	TTCGAA	1 cut(s)	571
BsrDI	GCAATG	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	484
BssAI	RCCGGY	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	206, 370
BssMI	GATC	6 cut(s)	10, 46, 73, 160, 448, 538
BssT1I	CCWWGG	1 cut(s)	370
Bst2UI	CCWGG	1 cut(s)	207
Bst6I	CTCTTC	3 cut(s)	191, 258, 491
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstBI	TTCGAA	1 cut(s)	571
BstDEI	CTNAG	4 cut(s)	5, 192, 251, 519
BstF5I	GGATG	3 cut(s)	118, 366, 507
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	6 cut(s)	13, 49, 76, 163, 451, 541
BstMAI	GTCTC	3 cut(s)	195, 324, 398
BstMBI	GATC	6 cut(s)	10, 46, 73, 160, 448, 538
BstMCI	CGRYCG	1 cut(s)	489
BstMWI	GCNNNNNNNGC	3 cut(s)	422, 425, 515
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	82, 428
Bsu36I	CCTNAGG	1 cut(s)	251
BtsCI	GGATG	3 cut(s)	118, 366, 507
CfoI	GCGC	1 cut(s)	45
Cfr10I	RCCGGY	1 cut(s)	484
CspAI	ACCGGT	1 cut(s)	484
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
DdeI	CTNAG	4 cut(s)	5, 192, 251, 519
DpnI	GATC	6 cut(s)	12, 48, 75, 162, 450, 540
DpnII	GATC	6 cut(s)	10, 46, 73, 160, 448, 538
DraI	TTTAAA	1 cut(s)	594
DriI	GACNNNNNGTC	1 cut(s)	337
Eam1104I	CTCTTC	3 cut(s)	191, 258, 491
Eam1105I	GACNNNNNGTC	1 cut(s)	337
EarI	CTCTTC	3 cut(s)	191, 258, 491
Eco130I	CCWWGG	1 cut(s)	370
Eco32I	GATATC	1 cut(s)	179
Eco81I	CCTNAGG	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	205
EcoRV	GATATC	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
FaiI	YATR	1 cut(s)	312
Fnu4HI	GCNGC	3 cut(s)	96, 417, 426
FokI	GGATG	3 cut(s)	125, 353, 514
Fsp4HI	GCNGC	3 cut(s)	96, 417, 426
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	3 cut(s)	96, 417, 426
GsaI	CCCAGC	1 cut(s)	616
HapII	CCGG	1 cut(s)	485
HhaI	GCGC	1 cut(s)	45
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	1 cut(s)	485
HphI	GGTGA	4 cut(s)	238, 283, 314, 458
Hpy188I	TCNGA	6 cut(s)	40, 73, 195, 399, 513, 529
Hpy188III	TCNNGA	2 cut(s)	77, 164
HpyAV	CCTTC	4 cut(s)	217, 262, 299, 593
HpyCH4V	TGCA	5 cut(s)	98, 173, 185, 416, 606
HpyF10VI	GCNNNNNNNGC	3 cut(s)	422, 425, 515
HpyF3I	CTNAG	4 cut(s)	5, 192, 251, 519
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	6 cut(s)	10, 46, 73, 160, 448, 538
LmnI	GCTCC	2 cut(s)	40, 514
Lsp1109I	GCAGC	2 cut(s)	82, 428
LweI	GCATC	2 cut(s)	103, 403
MaeI	CTAG	1 cut(s)	408
MalI	GATC	6 cut(s)	12, 48, 75, 162, 450, 540
MboI	GATC	6 cut(s)	10, 46, 73, 160, 448, 538
MboII	GAAGA	7 cut(s)	73, 208, 232, 272, 275, 508, 593
MluCI	AATT	2 cut(s)	441, 550
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	536
MnlI	CCTC	6 cut(s)	246, 292, 374, 430, 459, 492
MseI	TTAA	3 cut(s)	357, 546, 593
MspA1I	CMGCKG	2 cut(s)	419, 518
MspI	CCGG	1 cut(s)	485
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	3 cut(s)	422, 425, 515
NdeII	GATC	6 cut(s)	10, 46, 73, 160, 448, 538
NlaIV	GGNNCC	2 cut(s)	32, 510
NspV	TTCGAA	1 cut(s)	571
PinAI	ACCGGT	1 cut(s)	484
PkrI	GCNGC	3 cut(s)	97, 418, 427
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	205
PspFI	CCCAGC	1 cut(s)	612
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	32, 510
PvuII	CAGCTG	2 cut(s)	419, 518
SaqAI	TTAA	3 cut(s)	357, 546, 593
SatI	GCNGC	3 cut(s)	96, 417, 426
Sau3AI	GATC	6 cut(s)	10, 46, 73, 160, 448, 538
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	207
SfaNI	GCATC	2 cut(s)	103, 403
SfuI	TTCGAA	1 cut(s)	571
Sse9I	AATT	2 cut(s)	441, 550
SsiI	CCGC	1 cut(s)	426
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	370
TaqI	TCGA	2 cut(s)	541, 571
TasI	AATT	2 cut(s)	441, 550
TauI	GCSGC	1 cut(s)	428
Tru1I	TTAA	3 cut(s)	357, 546, 593
Tru9I	TTAA	3 cut(s)	357, 546, 593
TseI	GCWGC	2 cut(s)	95, 416
TspDTI	ATGAA	2 cut(s)	161, 546
TspGWI	ACGGA	1 cut(s)	450
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.