RLG00000000877

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002514
Physical Location & Seq
Forward (+)
7287350 .. 7288210
861 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000877

Sequence Viewer

Length: 789 bp
ATGATCATTATAAGGTTCTTGGTTTGCCGTCCGGTGAGGAAGGCTCTAAGCTCACAGAAGAAACAGATTACGAAGGCTTACCACGCAAAGGCTTTGGTGTTGCACCCAGACAAGAGGCCTAAAAGTGATCTCCAAGCCAACACCATCTTCCAAAGGCTCAAAAGATCCTATGAGGTTCTCAAAAACGAAAGGGCCCGCAAAGTGTTCAACAAAGTCCTTAGAGATCAAAGACAGAAGGTTGGTCGCCATTCGGAGCGCGATCCCAAGCGACAGAAGATGGTTTCTGATCTTGAATCAAGAGAACGAGCTTCAAAGTTTGACAGGGATGCCAAAGATAGACAAGAACGGGATGAGAGAATGAAGAGGAAGTTGGATGAAGAGTGTGCAAGATATCGTGCAATGCCTCCGAAGAGAGAGACTGGGGGAGTTGGGAAGAAGGTGAATGGCGGTGTTGAGATACGCCTGAGGTTAGAAGAAGAGAAGGCGATTAGAGTGCGTTGGGAAAAGTTTGGGGGTGAAGGTTGTTTGGCTTTGGTTCTGATGGAGACTAGAGATGCAACTGTTGCTGCAACAGGAGCGGTAATTGGTAATCTTTCTAATCCTTTGAGGGTTTCACTTTTTCAACCAGTTGTACCGAAGATGACGGTGTCTCCGACAGCTGAGAAGTATGATGAACCTGATCGAATGAATAATATGGTCGGGGTTGGCTTTCGAACATTTGAAGATGATGTTTTAAAGAAGATTGCACAGGCTGGGCAGAAGCAAAAACTTGATAGACAAGGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

263

Amino Acids

30.2

Weight (kDa)

10.22

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 18 - 69 7.7e-11 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 11
AccBSI CCGCTC 1 cut(s) 578
AccII CGCG 1 cut(s) 258
AciI CCGC 3 cut(s) 196, 447, 578
AclWI GGATC 2 cut(s) 159, 254
AfaI GTAC 1 cut(s) 633
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 5 cut(s) 208, 293, 312, 623, 722
AjuI GAANNNNNNNTTGG 4 cut(s) 131, 163, 353, 385
AluBI AGCT 3 cut(s) 51, 308, 659
AluI AGCT 3 cut(s) 51, 308, 659
Alw26I GTCTC 3 cut(s) 410, 539, 654
AlwI GGATC 2 cut(s) 159, 254
AoxI GGCC 2 cut(s) 116, 192
ApaI GGGCCC 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 566
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 2 cut(s) 192, 193
AsuHPI GGTGA 3 cut(s) 46, 451, 527
AsuII TTCGAA 1 cut(s) 712
AxyI CCTNAGG 1 cut(s) 464
BaeGI GKGCMC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 196
BbvI GCAGC 1 cut(s) 553
BccI CCATC 3 cut(s) 152, 271, 535
BceAI ACGGC 1 cut(s) 12
BcgI CGANNNNNNTGC 2 cut(s) 475, 509
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 3 cut(s) 410, 539, 654
BfaI CTAG 1 cut(s) 549
BisI GCNGC 1 cut(s) 567
BlsI GCNGC 1 cut(s) 568
BmgT120I GGNCC 2 cut(s) 192, 193
BmiI GGNNCC 1 cut(s) 194
BmrI ACTGGG 1 cut(s) 429
BmsI GCATC 2 cut(s) 316, 544
BmuI ACTGGG 1 cut(s) 429
BplI GAGNNNNNCTC 2 cut(s) 28, 60
Bpu14I TTCGAA 1 cut(s) 712
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 634, 664
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 2 cut(s) 424, 626
Bse21I CCTNAGG 1 cut(s) 464
Bse3DI GCAATG 1 cut(s) 405
BseGI GGATG 3 cut(s) 331, 355, 379
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 2 cut(s) 455, 651
BseNI ACTGG 2 cut(s) 424, 626
BseSI GKGCMC 1 cut(s) 196
BseXI GCAGC 1 cut(s) 553
BseYI CCCAGC 1 cut(s) 752
Bsh1236I CGCG 1 cut(s) 258
BshFI GGCC 2 cut(s) 118, 194
BsiSI CCGG 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 3 cut(s) 410, 539, 654
BsnI GGCC 2 cut(s) 118, 194
Bsp119I TTCGAA 1 cut(s) 712
Bsp120I GGGCCC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 7 cut(s) 3, 127, 164, 223, 259, 286, 679
BspACI CCGC 3 cut(s) 196, 447, 578
BspANI GGCC 2 cut(s) 118, 194
BspCNI CTCAG 2 cut(s) 456, 652
BspFNI CGCG 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 194
BspPI GGATC 2 cut(s) 159, 254
BspT104I TTCGAA 1 cut(s) 712
BsrBI CCGCTC 1 cut(s) 578
BsrDI GCAATG 1 cut(s) 405
BsrI ACTGG 2 cut(s) 424, 626
BssMI GATC 7 cut(s) 3, 127, 164, 223, 259, 286, 679
Bst4CI ACNGT 2 cut(s) 562, 646
Bst6I CTCTTC 4 cut(s) 356, 372, 404, 471
BstAPI GCANNNNNTGC 1 cut(s) 563
BstBI TTCGAA 1 cut(s) 712
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 4 cut(s) 47, 218, 464, 660
BstF5I GGATG 3 cut(s) 331, 355, 379
BstFNI CGCG 1 cut(s) 258
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 7 cut(s) 6, 130, 167, 226, 262, 289, 682
BstMAI GTCTC 3 cut(s) 410, 539, 654
BstMBI GATC 7 cut(s) 3, 127, 164, 223, 259, 286, 679
BstMWI GCNNNNNNNGC 3 cut(s) 83, 563, 575
BstSLI GKGCMC 1 cut(s) 196
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 553
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
Bsu36I CCTNAGG 1 cut(s) 464
BsuRI GGCC 2 cut(s) 118, 194
BtsCI GGATG 3 cut(s) 331, 355, 379
Cac8I GCNNGC 1 cut(s) 196
CfoI GCGC 1 cut(s) 258
Cfr13I GGNCC 2 cut(s) 192, 193
Csp6I GTAC 1 cut(s) 632
CviQI GTAC 1 cut(s) 632
DdeI CTNAG 4 cut(s) 47, 218, 464, 660
DpnI GATC 7 cut(s) 5, 129, 166, 225, 261, 288, 681
DpnII GATC 7 cut(s) 3, 127, 164, 223, 259, 286, 679
DraI TTTAAA 1 cut(s) 735
Eam1104I CTCTTC 4 cut(s) 356, 372, 404, 471
EarI CTCTTC 4 cut(s) 356, 372, 404, 471
Eco147I AGGCCT 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 196
Eco32I GATATC 1 cut(s) 392
Eco81I CCTNAGG 1 cut(s) 464
EcoO109I RGGNCCY 1 cut(s) 192
EcoRV GATATC 1 cut(s) 392
EcoT38I GRGCYC 1 cut(s) 196
FaiI YATR 5 cut(s) 11, 171, 669, 695, 787
FauI CCCGC 1 cut(s) 203
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 567
FokI GGATG 3 cut(s) 338, 362, 386
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 567
FspBI CTAG 1 cut(s) 549
GlaI GCGC 1 cut(s) 257
GluI GCNGC 1 cut(s) 567
GsaI CCCAGC 1 cut(s) 756
HaeIII GGCC 2 cut(s) 118, 194
HapII CCGG 1 cut(s) 32
HhaI GCGC 1 cut(s) 258
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HinfI GANTC 1 cut(s) 293
HpaII CCGG 1 cut(s) 32
HphI GGTGA 3 cut(s) 46, 451, 527
Hpy188I TCNGA 5 cut(s) 253, 286, 408, 540, 654
Hpy188III TCNNGA 2 cut(s) 290, 297
HpyAV CCTTC 6 cut(s) 34, 67, 229, 430, 475, 512
HpyCH4III ACNGT 2 cut(s) 562, 646
HpyCH4V TGCA 7 cut(s) 103, 386, 398, 557, 569, 746, 785
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 563, 575
HpyF3I CTNAG 4 cut(s) 47, 218, 464, 660
HspAI GCGC 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 7 cut(s) 3, 127, 164, 223, 259, 286, 679
LmnI GCTCC 2 cut(s) 253, 575
Lsp1109I GCAGC 1 cut(s) 553
LweI GCATC 2 cut(s) 316, 544
MaeI CTAG 1 cut(s) 549
MalI GATC 7 cut(s) 5, 129, 166, 225, 261, 288, 681
MbiI CCGCTC 1 cut(s) 578
MboI GATC 7 cut(s) 3, 127, 164, 223, 259, 286, 679
MflI RGATCY 1 cut(s) 164
MhlI GDGCHC 1 cut(s) 196
MluCI AATT 1 cut(s) 582
MmeI TCCRAC 2 cut(s) 351, 677
MnlI CCTC 7 cut(s) 30, 108, 166, 357, 414, 459, 600
MseI TTAA 1 cut(s) 734
MspA1I CMGCKG 1 cut(s) 659
MspI CCGG 1 cut(s) 32
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 3 cut(s) 83, 563, 575
NdeII GATC 7 cut(s) 3, 127, 164, 223, 259, 286, 679
NlaIV GGNNCC 1 cut(s) 194
NspV TTCGAA 1 cut(s) 712
PceI AGGCCT 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 650
PfeI GAWTC 1 cut(s) 293
PflFI GACNNNGTC 1 cut(s) 646
PkrI GCNGC 1 cut(s) 568
PsiI TTATAA 1 cut(s) 11
PspFI CCCAGC 1 cut(s) 752
PspN4I GGNNCC 1 cut(s) 194
PspOMI GGGCCC 1 cut(s) 192
PspPI GGNCC 2 cut(s) 192, 193
PsuI RGATCY 1 cut(s) 164
PsyI GACNNNGTC 1 cut(s) 646
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 1 cut(s) 633
RsaNI GTAC 1 cut(s) 632
SaqAI TTAA 1 cut(s) 734
SatI GCNGC 1 cut(s) 567
Sau3AI GATC 7 cut(s) 3, 127, 164, 223, 259, 286, 679
Sau96I GGNCC 2 cut(s) 192, 193
SduI GDGCHC 1 cut(s) 196
SfaNI GCATC 2 cut(s) 316, 544
SfuI TTCGAA 1 cut(s) 712
Sse9I AATT 1 cut(s) 582
SseBI AGGCCT 1 cut(s) 118
SsiI CCGC 3 cut(s) 196, 447, 578
SspMI CTAG 1 cut(s) 549
StuI AGGCCT 1 cut(s) 118
TaaI ACNGT 2 cut(s) 562, 646
TaqI TCGA 2 cut(s) 682, 712
TasI AATT 1 cut(s) 582
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 1 cut(s) 734
Tru9I TTAA 1 cut(s) 734
TseI GCWGC 1 cut(s) 566
TspDTI ATGAA 4 cut(s) 374, 390, 687, 701
Tth111I GACNNNGTC 1 cut(s) 646
XspI CTAG 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.