Rh7AG472700

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002514
Physical Location & Seq
Reverse (-)
65605855 .. 65608373
2519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG472700.1

Sequence Viewer

Length: 312 bp
ATGAATAAGATTATGGACAAAGATCATTATAAGGTTCTTGGTTTGTCGTCCAGCGAGGAAGGCTCTCAGCTCACAGAGAAACAGATTAAAAAGGCTTTTGTGTTGCACCCGGACAAGAGGCCTAAAAGTGATCTCCAAGCCAATACCAACTTCCAAAGGCTCAAAAGATCCTATGAGGTTCTCAAGAATGAAAGTGCCCGCGAAGTGTTGGACAAAATCCTTAAAGATCAAAGACATGCGATCCCAAGAGACAGAAGATGGTTTATGATCCTAAAGCAAGATAACGAGCTGCAAAGGGCTTTCCGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

103

Amino Acids

12.29

Weight (kDa)

9.93

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 8 - 71 4.2e-12 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 30
AccII CGCG 1 cut(s) 201
AciI CCGC 1 cut(s) 199
AclWI GGATC 3 cut(s) 162, 235, 262
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 2 cut(s) 70, 289
AluI AGCT 2 cut(s) 70, 289
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 3 cut(s) 162, 235, 262
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 289
AsuC2I CCSGG 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 276
BccI CCATC 1 cut(s) 252
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 243
BisI GCNGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 291
Bme1390I CCNGG 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 110
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 80
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 1 cut(s) 276
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 1 cut(s) 121
BsiSI CCGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 243
BsnI GGCC 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 6 cut(s) 22, 130, 167, 226, 240, 267
BspACI CCGC 1 cut(s) 199
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 1 cut(s) 79
BspFNI CGCG 1 cut(s) 201
BspPI GGATC 3 cut(s) 162, 235, 262
BssMI GATC 6 cut(s) 22, 130, 167, 226, 240, 267
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 66
BstFNI CGCG 1 cut(s) 201
BstKTI GATC 6 cut(s) 25, 133, 170, 229, 243, 270
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 6 cut(s) 22, 130, 167, 226, 240, 267
BstMWI GCNNNNNNNGC 2 cut(s) 60, 305
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 199
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 167
BstYI RGATCY 1 cut(s) 167
BsuRI GGCC 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 199
CviAII CATG 1 cut(s) 236
CviJI RGCY 8 cut(s) 63, 70, 95, 121, 140, 160, 289, 299
CviKI_1 RGCY 8 cut(s) 63, 70, 95, 121, 140, 160, 289, 299
DdeI CTNAG 1 cut(s) 66
DpnI GATC 6 cut(s) 24, 132, 169, 228, 242, 269
DpnII GATC 6 cut(s) 22, 130, 167, 226, 240, 267
Eco147I AGGCCT 1 cut(s) 121
FaeI CATG 1 cut(s) 239
FaiI YATR 5 cut(s) 14, 30, 174, 237, 266
FatI CATG 1 cut(s) 235
FauI CCCGC 1 cut(s) 206
Fnu4HI GCNGC 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 290
GluI GCNGC 1 cut(s) 290
HaeIII GGCC 1 cut(s) 121
HapII CCGG 1 cut(s) 110
Hin1II CATG 1 cut(s) 239
HpaII CCGG 1 cut(s) 110
Hpy188III TCNNGA 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 53
HpyCH4V TGCA 2 cut(s) 106, 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 305
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 1 cut(s) 239
Kzo9I GATC 6 cut(s) 22, 130, 167, 226, 240, 267
LpnPI CCDG 2 cut(s) 64, 123
Lsp1109I GCAGC 1 cut(s) 276
MalI GATC 6 cut(s) 24, 132, 169, 228, 242, 269
MboI GATC 6 cut(s) 22, 130, 167, 226, 240, 267
MboII GAAGA 1 cut(s) 267
MflI RGATCY 1 cut(s) 167
MhlI GDGCHC 1 cut(s) 199
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 3 cut(s) 49, 111, 169
MseI TTAA 2 cut(s) 87, 222
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 60, 305
NciI CCSGG 1 cut(s) 110
NdeII GATC 6 cut(s) 22, 130, 167, 226, 240, 267
NlaIII CATG 1 cut(s) 239
NspI RCATGY 1 cut(s) 239
PceI AGGCCT 1 cut(s) 121
PkrI GCNGC 1 cut(s) 291
PsiI TTATAA 1 cut(s) 30
PsuI RGATCY 1 cut(s) 167
SaqAI TTAA 2 cut(s) 87, 222
SatI GCNGC 1 cut(s) 290
Sau3AI GATC 6 cut(s) 22, 130, 167, 226, 240, 267
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 199
SetI ASST 4 cut(s) 36, 72, 180, 291
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SseBI AGGCCT 1 cut(s) 121
SsiI CCGC 1 cut(s) 199
StuI AGGCCT 1 cut(s) 121
StyD4I CCNGG 1 cut(s) 108
Tru1I TTAA 2 cut(s) 87, 222
Tru9I TTAA 2 cut(s) 87, 222
TseI GCWGC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 17, 204
TspGWI ACGGA 1 cut(s) 293
XceI RCATGY 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.