Rroxscaffold_3G00222370

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002514
Physical Location & Seq
Forward (+)
5378409 .. 5379288
880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00222370.1

Sequence Viewer

Length: 849 bp
ATGAACAAGACTATAGACGAAGATCATTATAAGGTTCTTGGTTTGCCGTCCGGCGAGGAAGGCTCTAAGCTCACAGAGAAACAGATTACAAAGGCTTACCACATAAAAACTTTGGTGTTGCACCCTGACAAGAGGCCTAAAAGTGATCTCCAAGCCAATACCAACTTCCAAAGGCTCAAAAGATCCTATGAGGTTCTCAAGAATGAAAGTTCCCGCAAAGTGTTCGACCAAATGCTTAGAGAGCAAAGACAGAAAGATGGGAACCATTCGGAGCACGATCCCAAGCGACAGAAGATGGTTTCTGATCTTGAAGCAAGAGAACGAGCTGCAAAGTTTGACAGGGATGCCAAAGTTAGACAAGAAAAAGATGAGAGAATGAAGAGGAAGTTAGATGAAGAGTGTGCTAGATATCGTGCAATGTCTCAGAAGAGAGAGCCTGGGGGAGTTGGGAAGAAGGTGAATGGTGGTGTTGGAATAAGCCTGAGATTAGAAGAAGAGAAGGTGATTAGAGTGCGTTGGGAAAAGTTTGAGGGTGAAGGCTATACAGCAAAAAGGTTGAGAGACTTGTTGTCCAAGTTTGGTGGAGTTAAAAGACCTCATCCTTGGTTCAGAGATGCAGCTGTTGCCGCAACAGGAGAGGTAATTGGTGATCTTTCTAATCCGTTGAGGGTTTCGCTTTTTCAACCGGTCGCACCGAAGAGGATGGTGGCTCCGACAGCAGAGAAGTCTGATGAACCTGATCGAGTTAAGAGTTTGGTTGGGGTTGGCTTTCGAACATTTGAAGATGATGTTTTAAAGAAGGTTGCACAGGCTGGGCAGAAGGAAAAACTTGATAGACAAAGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

282

Amino Acids

32.35

Weight (kDa)

9.75

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 8 - 76 5.4e-14 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 30
AciI CCGC 2 cut(s) 214, 627
AclWI GGATC 2 cut(s) 177, 272
AgeI ACCGGT 1 cut(s) 685
AgsI TTSAA 3 cut(s) 311, 683, 782
AhdI GACNNNNNGTC 1 cut(s) 568
AjnI CCWGG 1 cut(s) 436
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 3 cut(s) 70, 326, 620
AluI AGCT 3 cut(s) 70, 326, 620
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 2 cut(s) 426, 555
AlwI GGATC 2 cut(s) 177, 272
AoxI GGCC 1 cut(s) 134
ApeKI GCWGC 2 cut(s) 326, 617
AsiGI ACCGGT 1 cut(s) 685
AsuHPI GGTGA 4 cut(s) 469, 514, 545, 659
AsuII TTCGAA 1 cut(s) 772
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 2 cut(s) 313, 629
BccI CCATC 3 cut(s) 251, 289, 697
BceAI ACGGC 1 cut(s) 31
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BciT130I CCWGG 1 cut(s) 438
BcoDI GTCTC 2 cut(s) 426, 555
BfaI CTAG 1 cut(s) 405
BfmI CTRYAG 1 cut(s) 12
BisI GCNGC 3 cut(s) 327, 618, 627
BlsI GCNGC 3 cut(s) 328, 619, 628
Bme1390I CCNGG 1 cut(s) 438
BmeRI GACNNNNNGTC 1 cut(s) 568
BmiI GGNNCC 2 cut(s) 263, 711
BmrFI CCNGG 1 cut(s) 438
BmsI GCATC 2 cut(s) 334, 604
BplI GAGNNNNNCTC 2 cut(s) 47, 79
Bpu14I TTCGAA 1 cut(s) 772
BpuEI CTTGAG 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 437, 602
BsaWI WCCGGW 1 cut(s) 685
Bse118I RCCGGY 1 cut(s) 685
Bse3DI GCAATG 1 cut(s) 423
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 437, 602
BseGI GGATG 3 cut(s) 349, 598, 708
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 2 cut(s) 437, 473
BseXI GCAGC 2 cut(s) 313, 629
BseYI CCCAGC 1 cut(s) 812
Bsh1285I CGRYCG 1 cut(s) 690
BshFI GGCC 1 cut(s) 136
BshTI ACCGGT 1 cut(s) 685
BsiEI CGRYCG 1 cut(s) 690
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 2 cut(s) 51, 686
BsmAI GTCTC 2 cut(s) 426, 555
BsnI GGCC 1 cut(s) 136
Bsp119I TTCGAA 1 cut(s) 772
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 7 cut(s) 22, 145, 182, 277, 304, 649, 739
BspACI CCGC 2 cut(s) 214, 627
BspANI GGCC 1 cut(s) 136
BspCNI CTCAG 2 cut(s) 436, 474
BspLI GGNNCC 2 cut(s) 263, 711
BspPI GGATC 2 cut(s) 177, 272
BspT104I TTCGAA 1 cut(s) 772
BsrDI GCAATG 1 cut(s) 423
BsrFI RCCGGY 1 cut(s) 685
BssAI RCCGGY 1 cut(s) 685
BssECI CCNNGG 2 cut(s) 437, 602
BssMI GATC 7 cut(s) 22, 145, 182, 277, 304, 649, 739
BssT1I CCWWGG 1 cut(s) 602
Bst2UI CCWGG 1 cut(s) 438
Bst6I CTCTTC 5 cut(s) 374, 390, 422, 489, 692
BstAPI GCANNNNNTGC 1 cut(s) 623
BstBI TTCGAA 1 cut(s) 772
BstDEI CTNAG 4 cut(s) 66, 236, 423, 482
BstF5I GGATG 3 cut(s) 349, 598, 708
BstKTI GATC 7 cut(s) 25, 148, 185, 280, 307, 652, 742
BstMAI GTCTC 2 cut(s) 426, 555
BstMBI GATC 7 cut(s) 22, 145, 182, 277, 304, 649, 739
BstMCI CGRYCG 1 cut(s) 690
BstMWI GCNNNNNNNGC 5 cut(s) 60, 241, 623, 626, 716
BstNI CCWGG 1 cut(s) 438
BstSCI CCNGG 1 cut(s) 436
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 313, 629
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 1 cut(s) 136
BtsCI GGATG 3 cut(s) 349, 598, 708
Cfr10I RCCGGY 1 cut(s) 685
CspAI ACCGGT 1 cut(s) 685
CspCI CAANNNNNGTGG 2 cut(s) 562, 597
DdeI CTNAG 4 cut(s) 66, 236, 423, 482
DpnI GATC 7 cut(s) 24, 147, 184, 279, 306, 651, 741
DpnII GATC 7 cut(s) 22, 145, 182, 277, 304, 649, 739
DraI TTTAAA 1 cut(s) 795
DriI GACNNNNNGTC 1 cut(s) 568
Eam1104I CTCTTC 5 cut(s) 374, 390, 422, 489, 692
Eam1105I GACNNNNNGTC 1 cut(s) 568
EarI CTCTTC 5 cut(s) 374, 390, 422, 489, 692
Eco130I CCWWGG 1 cut(s) 602
Eco147I AGGCCT 1 cut(s) 136
Eco32I GATATC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 436
EcoRV GATATC 1 cut(s) 410
EcoT14I CCWWGG 1 cut(s) 602
ErhI CCWWGG 1 cut(s) 602
FaiI YATR 6 cut(s) 14, 30, 104, 189, 543, 847
FauI CCCGC 1 cut(s) 221
Fnu4HI GCNGC 3 cut(s) 327, 618, 627
FokI GGATG 3 cut(s) 356, 585, 715
Fsp4HI GCNGC 3 cut(s) 327, 618, 627
FspBI CTAG 1 cut(s) 405
GluI GCNGC 3 cut(s) 327, 618, 627
GsaI CCCAGC 1 cut(s) 816
HaeIII GGCC 1 cut(s) 136
HapII CCGG 2 cut(s) 51, 686
HpaII CCGG 2 cut(s) 51, 686
HphI GGTGA 4 cut(s) 469, 514, 545, 659
Hpy188I TCNGA 6 cut(s) 271, 304, 426, 611, 714, 730
Hpy188III TCNNGA 2 cut(s) 199, 308
HpyAV CCTTC 6 cut(s) 53, 448, 493, 530, 793, 814
HpyCH4V TGCA 6 cut(s) 121, 329, 416, 617, 806, 845
HpyF10VI GCNNNNNNNGC 5 cut(s) 60, 241, 623, 626, 716
HpyF3I CTNAG 4 cut(s) 66, 236, 423, 482
Kzo9I GATC 7 cut(s) 22, 145, 182, 277, 304, 649, 739
LmnI GCTCC 2 cut(s) 271, 715
Lsp1109I GCAGC 2 cut(s) 313, 629
LweI GCATC 2 cut(s) 334, 604
MaeI CTAG 1 cut(s) 405
MalI GATC 7 cut(s) 24, 147, 184, 279, 306, 651, 741
MboI GATC 7 cut(s) 22, 145, 182, 277, 304, 649, 739
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 1 cut(s) 642
MmeI TCCRAC 2 cut(s) 451, 737
MnlI CCTC 9 cut(s) 49, 126, 184, 375, 523, 606, 631, 660, 693
MseI TTAA 3 cut(s) 588, 747, 794
MspA1I CMGCKG 1 cut(s) 620
MspI CCGG 2 cut(s) 51, 686
MspR9I CCNGG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 438
MwoI GCNNNNNNNGC 5 cut(s) 60, 241, 623, 626, 716
NdeII GATC 7 cut(s) 22, 145, 182, 277, 304, 649, 739
NlaIV GGNNCC 2 cut(s) 263, 711
NspV TTCGAA 1 cut(s) 772
PceI AGGCCT 1 cut(s) 136
PinAI ACCGGT 1 cut(s) 685
PkrI GCNGC 3 cut(s) 328, 619, 628
PsiI TTATAA 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 436
PspFI CCCAGC 1 cut(s) 812
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 2 cut(s) 263, 711
PsuI RGATCY 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 620
SaqAI TTAA 3 cut(s) 588, 747, 794
SatI GCNGC 3 cut(s) 327, 618, 627
Sau3AI GATC 7 cut(s) 22, 145, 182, 277, 304, 649, 739
ScrFI CCNGG 1 cut(s) 438
SduI GDGCHC 1 cut(s) 276
SfaNI GCATC 2 cut(s) 334, 604
SfcI CTRYAG 1 cut(s) 12
SfuI TTCGAA 1 cut(s) 772
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 1 cut(s) 642
SseBI AGGCCT 1 cut(s) 136
SsiI CCGC 2 cut(s) 214, 627
SspMI CTAG 1 cut(s) 405
StuI AGGCCT 1 cut(s) 136
StyD4I CCNGG 1 cut(s) 436
StyI CCWWGG 1 cut(s) 602
TaqI TCGA 3 cut(s) 225, 742, 772
TasI AATT 1 cut(s) 642
TauI GCSGC 1 cut(s) 629
Tru1I TTAA 3 cut(s) 588, 747, 794
Tru9I TTAA 3 cut(s) 588, 747, 794
TseI GCWGC 2 cut(s) 326, 617
TspDTI ATGAA 5 cut(s) 17, 219, 392, 408, 747
TspGWI ACGGA 1 cut(s) 651
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.