AT5G40800

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001258
Physical Location & Seq
Reverse (-)
16334581 .. 16336017
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40800.1

Sequence Viewer

Length: 819 bp
ATGGATCAAGATCATGAGTTATGGCGGACGCTAAGATGCGCCGGTAAAGCGCAAGATAAGACCTCTGTTGATACTCTCATGCTTAAGTACCGTCCGATCGCTCCAAAGCCGACGACTACTGGTCAACCATTGGTCGGAGATACAAGTAGCACGAGAAGGACGAAGAGAAAGTACGTTAGGGTTTCAAAGAATAATAAAGCCACGTGTCGATCAAAGACGAACGGCTTCAGATCTAGCTCAACAGATCCGGAGAATGGTCGGGAAGATATCGTCACGCTACAGCTCTTACCGGAGAGATCTACGCCGTTGAGTTTAGATCATAATAATCTCGATCCAACGGTGGAAACGATAAACGGAGATGAAACTTGTAATACCGACACGTGGCTCAAGTTTAACGGCGGTGATGACGCGTTGCAACAAGTTCCGGTAGAGACGTGGGTGACGGTGGAGTCCGTTAACAGTGGCTTGGTTTCCCATGCGGTAGGGTTAACGGACGAAGAGCTCACATATGCTTTAGATAAAGACACGTGTCCTGGTTTCATATCGGATGGTTCGAACCGTGTGGTGATGGTTAACGAGGCTTACCGGAGGATAGTAACCGGAGACGGCGGATTCGGAAGAGAGGTGATAGTGTGGTTGGTGGTTGACCAAACGGCGACGTTTTGTGACTACCGAACTTTTACGTGTAAGGTGAGAATGGAATACACGTGGCGAGAAACGAAGTACACTAAAACGTTGCCGTGTGATGTGTGGAAGATGGAGTTTGGTGGATTTGCATGGAGGTTGGATACTACTGCAGCTTTAACTCTTTGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.7

Weight (kDa)

5.75

Isoelectric Point (pI)

30.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 143 - 269 1.4e-51 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 448
AccII CGCG 1 cut(s) 410
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 4 cut(s) 25, 399, 479, 609
AclI AACGTT 1 cut(s) 734
AclWI GGATC 3 cut(s) 12, 239, 326
AcuI CTGAAG 1 cut(s) 211
AcvI CACGTG 4 cut(s) 204, 381, 528, 708
AfaI GTAC 3 cut(s) 89, 173, 725
AfiI CCNNNNNNNGG 3 cut(s) 134, 254, 381
AflII CTTAAG 1 cut(s) 83
AflIII ACRYGT 7 cut(s) 203, 378, 408, 525, 527, 683, 705
AgsI TTSAA 1 cut(s) 186
AhdI GACNNNNNGTC 1 cut(s) 120
AjiI CACGTC 1 cut(s) 435
AjnI CCWGG 1 cut(s) 532
AluBI AGCT 4 cut(s) 237, 283, 502, 800
AluI AGCT 4 cut(s) 237, 283, 502, 800
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 2 cut(s) 425, 597
AlwI GGATC 3 cut(s) 12, 239, 326
Aor13HI TCCGGA 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 797
ArsI GACNNNNNNTTYG 2 cut(s) 596, 628
Asp700I GAANNNNTTC 1 cut(s) 224
AspLEI GCGC 2 cut(s) 41, 52
AsuHPI GGTGA 5 cut(s) 413, 451, 577, 637, 703
AsuII TTCGAA 1 cut(s) 554
BanII GRGCYC 1 cut(s) 504
BarI GAAGNNNNNNTAC 2 cut(s) 155, 187
BauI CACGAG 1 cut(s) 151
BbrPI CACGTG 4 cut(s) 204, 381, 528, 708
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 1 cut(s) 809
BccI CCATC 3 cut(s) 542, 562, 751
BceAI ACGGC 6 cut(s) 238, 289, 412, 622, 669, 724
BciT130I CCWGG 1 cut(s) 534
BciVI GTATCC 1 cut(s) 781
BcoDI GTCTC 2 cut(s) 425, 597
BfaI CTAG 1 cut(s) 234
BfmI CTRYAG 2 cut(s) 278, 795
BfrI CTTAAG 1 cut(s) 83
BfuI GTATCC 1 cut(s) 781
BglII AGATCT 2 cut(s) 230, 296
BisI GCNGC 1 cut(s) 798
BlsI GCNGC 1 cut(s) 799
Bme1390I CCNGG 1 cut(s) 534
BmeRI GACNNNNNGTC 1 cut(s) 120
BmgBI CACGTC 1 cut(s) 435
BmrFI CCNGG 1 cut(s) 534
BmsI GCATC 1 cut(s) 26
BoxI GACNNNNGTC 1 cut(s) 528
Bpu14I TTCGAA 1 cut(s) 554
BpuEI CTTGAG 1 cut(s) 371
BsaAI YACGTR 5 cut(s) 204, 381, 528, 684, 708
BsaBI GATNNNNATC 1 cut(s) 9
BsaWI WCCGGW 5 cut(s) 247, 289, 424, 585, 599
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 254, 381
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 1 cut(s) 534
BseGI GGATG 1 cut(s) 553
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 3 cut(s) 134, 254, 381
BseNI ACTGG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 809
Bsh1236I CGCG 1 cut(s) 410
Bsh1285I CGRYCG 1 cut(s) 99
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 504
BsiSI CCGG 6 cut(s) 42, 248, 290, 425, 586, 600
BslI CCNNNNNNNGG 3 cut(s) 134, 254, 381
BsmAI GTCTC 2 cut(s) 425, 597
BsmBI CGTCTC 2 cut(s) 425, 597
Bsp119I TTCGAA 1 cut(s) 554
Bsp1286I GDGCHC 1 cut(s) 504
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 9 cut(s) 4, 10, 96, 209, 230, 244, 296, 316, 331
BspACI CCGC 4 cut(s) 25, 399, 479, 609
BspEI TCCGGA 1 cut(s) 247
BspFNI CGCG 1 cut(s) 410
BspHI TCATGA 1 cut(s) 13
BspMAI CTGCAG 1 cut(s) 799
BspPI GGATC 3 cut(s) 12, 239, 326
BspQI GCTCTTC 1 cut(s) 492
BspT104I TTCGAA 1 cut(s) 554
BspTI CTTAAG 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 1 cut(s) 124
BssAI RCCGGY 1 cut(s) 41
BssMI GATC 9 cut(s) 4, 10, 96, 209, 230, 244, 296, 316, 331
BssSI CACGAG 1 cut(s) 151
Bst2BI CACGAG 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 5 cut(s) 92, 340, 445, 461, 560
Bst6I CTCTTC 3 cut(s) 158, 492, 613
BstAFI CTTAAG 1 cut(s) 83
BstBAI YACGTR 5 cut(s) 204, 381, 528, 684, 708
BstBI TTCGAA 1 cut(s) 554
BstDEI CTNAG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 553
BstFNI CGCG 1 cut(s) 410
BstHHI GCGC 2 cut(s) 41, 52
BstKTI GATC 9 cut(s) 7, 13, 99, 212, 233, 247, 299, 319, 334
BstMAI GTCTC 2 cut(s) 425, 597
BstMBI GATC 9 cut(s) 4, 10, 96, 209, 230, 244, 296, 316, 331
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 534
BstPAI GACNNNNGTC 1 cut(s) 528
BstSCI CCNGG 1 cut(s) 532
BstSFI CTRYAG 2 cut(s) 278, 795
BstUI CGCG 1 cut(s) 410
BstV1I GCAGC 1 cut(s) 809
BstX2I RGATCY 3 cut(s) 230, 244, 296
BstYI RGATCY 3 cut(s) 230, 244, 296
BsuI GTATCC 1 cut(s) 781
BtrI CACGTC 1 cut(s) 435
BtsCI GGATG 1 cut(s) 553
BtsIMutI CAGTG 1 cut(s) 466
CciI TCATGA 1 cut(s) 13
CfoI GCGC 2 cut(s) 41, 52
Cfr10I RCCGGY 1 cut(s) 41
CseI GACGC 2 cut(s) 37, 416
Csp6I GTAC 3 cut(s) 88, 172, 724
CviAII CATG 4 cut(s) 14, 79, 476, 777
CviQI GTAC 3 cut(s) 88, 172, 724
DdeI CTNAG 1 cut(s) 32
DpnI GATC 9 cut(s) 6, 12, 98, 211, 232, 246, 298, 318, 333
DpnII GATC 9 cut(s) 4, 10, 96, 209, 230, 244, 296, 316, 331
DrdI GACNNNNNNGTC 1 cut(s) 448
DriI GACNNNNNGTC 1 cut(s) 120
DseDI GACNNNNNNGTC 1 cut(s) 448
Eam1104I CTCTTC 3 cut(s) 158, 492, 613
Eam1105I GACNNNNNGTC 1 cut(s) 120
EarI CTCTTC 3 cut(s) 158, 492, 613
EciI GGCGGA 2 cut(s) 40, 624
Ecl136II GAGCTC 1 cut(s) 502
Eco24I GRGCYC 1 cut(s) 504
Eco32I GATATC 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 502
Eco57I CTGAAG 1 cut(s) 211
Eco72I CACGTG 4 cut(s) 204, 381, 528, 708
EcoICRI GAGCTC 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 532
EcoRV GATATC 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 504
Esp3I CGTCTC 2 cut(s) 425, 597
FaeI CATG 4 cut(s) 17, 82, 479, 780
FaiI YATR 9 cut(s) 15, 22, 80, 321, 477, 508, 510, 542, 778
FatI CATG 4 cut(s) 13, 78, 475, 776
FauNDI CATATG 1 cut(s) 508
Fnu4HI GCNGC 1 cut(s) 798
FokI GGATG 1 cut(s) 560
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 1 cut(s) 798
FspBI CTAG 1 cut(s) 234
GlaI GCGC 2 cut(s) 40, 51
GluI GCNGC 1 cut(s) 798
HapII CCGG 6 cut(s) 42, 248, 290, 425, 586, 600
HgaI GACGC 2 cut(s) 37, 416
HhaI GCGC 2 cut(s) 41, 52
Hin1II CATG 4 cut(s) 17, 82, 479, 780
Hin6I GCGC 2 cut(s) 39, 50
HinP1I GCGC 2 cut(s) 39, 50
HincII GTYRAC 5 cut(s) 125, 457, 489, 574, 646
HindII GTYRAC 5 cut(s) 125, 457, 489, 574, 646
HinfI GANTC 2 cut(s) 449, 612
HpaI GTTAAC 3 cut(s) 457, 489, 574
HpaII CCGG 6 cut(s) 42, 248, 290, 425, 586, 600
HphI GGTGA 5 cut(s) 413, 451, 577, 637, 703
Hpy166II GTNNAC 6 cut(s) 125, 457, 489, 574, 646, 726
Hpy188I TCNGA 5 cut(s) 96, 137, 230, 547, 617
Hpy188III TCNNGA 5 cut(s) 8, 14, 248, 260, 329
Hpy8I GTNNAC 6 cut(s) 125, 457, 489, 574, 646, 726
Hpy99I CGWCG 2 cut(s) 115, 661
HpyAV CCTTC 1 cut(s) 150
HpyCH4III ACNGT 5 cut(s) 92, 340, 445, 461, 560
HpyCH4IV ACGT 9 cut(s) 174, 203, 380, 434, 527, 659, 683, 707, 734
HpyCH4V TGCA 3 cut(s) 415, 776, 797
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 9 cut(s) 174, 203, 380, 434, 527, 659, 683, 707, 734
Hsp92II CATG 4 cut(s) 17, 82, 479, 780
HspAI GCGC 2 cut(s) 39, 50
Kpn2I TCCGGA 1 cut(s) 247
KspAI GTTAAC 3 cut(s) 457, 489, 574
Kzo9I GATC 9 cut(s) 4, 10, 96, 209, 230, 244, 296, 316, 331
LguI GCTCTTC 1 cut(s) 492
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 9 cut(s) 55, 105, 261, 303, 438, 519, 546, 599, 613
Lsp1109I GCAGC 1 cut(s) 809
LweI GCATC 1 cut(s) 26
MaeI CTAG 1 cut(s) 234
MaeII ACGT 9 cut(s) 174, 203, 380, 434, 527, 659, 683, 707, 734
MaeIII GTNAC 4 cut(s) 271, 439, 595, 665
MalI GATC 9 cut(s) 6, 12, 98, 211, 232, 246, 298, 318, 333
MboI GATC 9 cut(s) 4, 10, 96, 209, 230, 244, 296, 316, 331
MboII GAAGA 5 cut(s) 175, 275, 509, 630, 766
MflI RGATCY 3 cut(s) 230, 244, 296
MhlI GDGCHC 1 cut(s) 504
MluI ACGCGT 1 cut(s) 408
MlyI GAGTC 1 cut(s) 458
MmeI TCCRAC 3 cut(s) 115, 359, 765
MnlI CCTC 5 cut(s) 73, 571, 582, 616, 774
MroI TCCGGA 1 cut(s) 247
MroXI GAANNNNTTC 1 cut(s) 224
MseI TTAA 6 cut(s) 84, 393, 456, 488, 573, 803
MspCI CTTAAG 1 cut(s) 83
MspI CCGG 6 cut(s) 42, 248, 290, 425, 586, 600
MspR9I CCNGG 1 cut(s) 534
MvaI CCWGG 1 cut(s) 534
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeI CATATG 1 cut(s) 508
NdeII GATC 9 cut(s) 4, 10, 96, 209, 230, 244, 296, 316, 331
NlaIII CATG 4 cut(s) 17, 82, 479, 780
NmuCI GTSAC 3 cut(s) 271, 439, 665
NspV TTCGAA 1 cut(s) 554
PagI TCATGA 1 cut(s) 13
PciSI GCTCTTC 1 cut(s) 492
PcsI WCGNNNNNNNCGW 3 cut(s) 158, 344, 551
PdmI GAANNNNTTC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 612
PkrI GCNGC 1 cut(s) 799
Ple19I CGATCG 1 cut(s) 99
PleI GAGTC 1 cut(s) 457
PmaCI CACGTG 4 cut(s) 204, 381, 528, 708
PmlI CACGTG 4 cut(s) 204, 381, 528, 708
PpsI GAGTC 1 cut(s) 457
Ppu21I YACGTR 5 cut(s) 204, 381, 528, 684, 708
PshAI GACNNNNGTC 1 cut(s) 528
Psp124BI GAGCTC 1 cut(s) 504
Psp1406I AACGTT 1 cut(s) 734
Psp6I CCWGG 1 cut(s) 532
PspCI CACGTG 4 cut(s) 204, 381, 528, 708
PspGI CCWGG 1 cut(s) 532
PstI CTGCAG 1 cut(s) 799
PsuI RGATCY 3 cut(s) 230, 244, 296
PvuI CGATCG 1 cut(s) 99
RsaI GTAC 3 cut(s) 89, 173, 725
RsaNI GTAC 3 cut(s) 88, 172, 724
SacI GAGCTC 1 cut(s) 504
SapI GCTCTTC 1 cut(s) 492
SaqAI TTAA 6 cut(s) 84, 393, 456, 488, 573, 803
SatI GCNGC 1 cut(s) 798
Sau3AI GATC 9 cut(s) 4, 10, 96, 209, 230, 244, 296, 316, 331
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 1 cut(s) 534
SduI GDGCHC 1 cut(s) 504
SfaNI GCATC 1 cut(s) 26
SfcI CTRYAG 2 cut(s) 278, 795
SfuI TTCGAA 1 cut(s) 554
SmlI CTYRAG 2 cut(s) 83, 386
SmoI CTYRAG 2 cut(s) 83, 386
SsiI CCGC 4 cut(s) 25, 399, 479, 609
SspMI CTAG 1 cut(s) 234
SstI GAGCTC 1 cut(s) 504
StyD4I CCNGG 1 cut(s) 532
TaaI ACNGT 5 cut(s) 92, 340, 445, 461, 560
TaiI ACGT 9 cut(s) 177, 206, 383, 437, 530, 662, 686, 710, 737
TaqI TCGA 3 cut(s) 208, 330, 554
TatI WGTACW 1 cut(s) 723
TfiI GAWTC 1 cut(s) 612
Tru1I TTAA 6 cut(s) 84, 393, 456, 488, 573, 803
Tru9I TTAA 6 cut(s) 84, 393, 456, 488, 573, 803
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 3 cut(s) 271, 439, 665
TseI GCWGC 1 cut(s) 797
Tsp45I GTSAC 3 cut(s) 271, 439, 665
TspDTI ATGAA 2 cut(s) 375, 529
TspGWI ACGGA 3 cut(s) 369, 442, 506
TspRI CASTG 1 cut(s) 466
Vha464I CTTAAG 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 224
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.