RLG00000006281

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001258
Physical Location & Seq
Reverse (-)
5893840 .. 5894733
894 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006281

Sequence Viewer

Length: 894 bp
ATGGAAGGCGGAGGAGAATGCGACGGTGGCGGTGAGAAGAAGCCTTCTGTTTTAAATCGGATATTGCTCAAATACCGGCCGATTGCGCCGAAACCATTCACCGGAGGCACAGCTTTGGATAAGCTGCCCAAGAGAACCAAGAGAAAGTACGTTAGGACGGTCCGCAAATATAAAGAAGATGAATACGGGAAAGGCCAAATGACGGATGAGCAGCGCGTGGAGACACGGCAGCTGTTGCCTCAGATCATGGAGCAGAGTGGTAGCAGTGGTACTGACCTCTCCAAGCACGGTGGCGGATCGAGCTGTGAGGTTGATGCTATGATCGTTGAAGATAACAATCATTGGTTGAGCTTGAGTGCAGCCGGAGATCCGACCGCGGCGGTGGGGAAGAAGCAGGTTGTCCTTGACAGCGTGTCAGATCCATCGGCGGTGATGGATCGGATGGGAGGAGTGGAATCGTGGGTGACGGTGGAGTGCGTGAGAGGCACATGCATGATGGCTCCGACTTCTTCACAAGGGTTTGGTCTTTCCGGGGTCAGTGCGGACGAGGAGAGAATGAGGAGATTGGAGAGAGACGCATGTCCGGGGTTCATATCGGACGGTTGGAACAGAGTGCAGTGGCTGAACGGAGCGTTTAGGAGGATGGTGATGATGACGAGGCAGCAGCAACCGTTACCGGAGGTAACGGTGTGGTTATGGATGAATGAGGAGCTCTCGCACACGACGAACTCGGCGTTCACGTGCCAAGTGAAACTGAAATACACGGTGGTGGAGAGTCACAAAAAGGAGAAGAACTACTACTCGCAGTTGGTGCCTTGTGATTTGTGGAGGATGGACGCCGGAGGATTTGCATGGCGGCTCGACGTTAAAGCTGCCCTCACTCTCGGCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

298

Amino Acids

33.01

Weight (kDa)

8.4

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 151 - 294 1.2e-46 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 385
AccB1I GGYRCC 1 cut(s) 811
AccII CGCG 2 cut(s) 216, 377
AclWI GGATC 4 cut(s) 304, 362, 413, 444
AcoI YGGCCR 1 cut(s) 77
AcvI CACGTG 1 cut(s) 741
AcyI GRCGYC 1 cut(s) 837
AfaI GTAC 2 cut(s) 149, 271
AfiI CCNNNNNNNGG 2 cut(s) 101, 202
AgsI TTSAA 1 cut(s) 329
AhdI GACNNNNNGTC 1 cut(s) 412
AleI CACNNNNGTG 1 cut(s) 767
AluBI AGCT 7 cut(s) 113, 124, 232, 303, 351, 712, 872
AluI AGCT 7 cut(s) 113, 124, 232, 303, 351, 712, 872
Alw21I GWGCWC 1 cut(s) 714
Alw26I GTCTC 2 cut(s) 215, 567
AlwI GGATC 4 cut(s) 304, 362, 413, 444
AlwNI CAGNNNCTG 1 cut(s) 622
AoxI GGCC 2 cut(s) 77, 193
ApeKI GCWGC 7 cut(s) 124, 211, 229, 359, 661, 664, 872
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 2 cut(s) 88, 216
AspS9I GGNCC 1 cut(s) 160
AsuC2I CCSGG 2 cut(s) 532, 585
AsuHPI GGTGA 5 cut(s) 44, 91, 442, 475, 658
AvaII GGWCC 1 cut(s) 160
BanI GGYRCC 1 cut(s) 811
BanII GRGCYC 1 cut(s) 714
BarI GAAGNNNNNNTAC 2 cut(s) 782, 814
BbrPI CACGTG 1 cut(s) 741
Bbv12I GWGCWC 1 cut(s) 714
BbvI GCAGC 7 cut(s) 111, 223, 241, 371, 673, 676, 859
BccI CCATC 6 cut(s) 427, 430, 436, 490, 637, 826
BceAI ACGGC 1 cut(s) 242
BcnI CCSGG 2 cut(s) 532, 585
BcoDI GTCTC 2 cut(s) 215, 567
BfuAI ACCTGC 1 cut(s) 385
BisI GCNGC 9 cut(s) 125, 212, 230, 360, 378, 662, 665, 857, 873
BlsI GCNGC 9 cut(s) 126, 213, 231, 361, 379, 663, 666, 858, 874
Bme1390I CCNGG 2 cut(s) 532, 585
Bme18I GGWCC 1 cut(s) 160
BmeRI GACNNNNNGTC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 2 cut(s) 501, 813
BmrFI CCNGG 2 cut(s) 532, 585
BmsI GCATC 1 cut(s) 304
BoxI GACNNNNGTC 1 cut(s) 579
BplI GAGNNNNNCTC 2 cut(s) 698, 730
BpuEI CTTGAG 1 cut(s) 373
BpuMI CCSGG 2 cut(s) 532, 585
BsaAI YACGTR 1 cut(s) 741
BsaBI GATNNNNATC 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 837
BsaJI CCNNGG 3 cut(s) 375, 531, 584
BsaWI WCCGGW 2 cut(s) 101, 676
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 202
Bse118I RCCGGY 1 cut(s) 75
Bse8I GATNNNNATC 1 cut(s) 336
BseDI CCNNGG 3 cut(s) 375, 531, 584
BseGI GGATG 5 cut(s) 211, 447, 648, 705, 837
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 2 cut(s) 101, 202
BseMII CTCAG 1 cut(s) 254
BseRI GAGGAG 5 cut(s) 27, 462, 563, 574, 722
BseX3I CGGCCG 1 cut(s) 77
BseXI GCAGC 7 cut(s) 111, 223, 241, 371, 673, 676, 859
BsgI GTGCAG 2 cut(s) 378, 635
Bsh1236I CGCG 2 cut(s) 216, 377
Bsh1285I CGRYCG 2 cut(s) 80, 375
BshFI GGCC 2 cut(s) 79, 195
BshNI GGYRCC 1 cut(s) 811
BsiEI CGRYCG 2 cut(s) 80, 375
BsiHKAI GWGCWC 1 cut(s) 714
BsiSI CCGG 7 cut(s) 76, 102, 363, 531, 584, 677, 840
BslI CCNNNNNNNGG 2 cut(s) 101, 202
BsmAI GTCTC 2 cut(s) 215, 567
BsmBI CGTCTC 1 cut(s) 567
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 2 cut(s) 79, 195
Bsp1286I GDGCHC 1 cut(s) 714
Bsp143I GATC 6 cut(s) 243, 296, 321, 367, 418, 436
BspANI GGCC 2 cut(s) 79, 195
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 2 cut(s) 216, 377
BspLI GGNNCC 2 cut(s) 501, 813
BspMI ACCTGC 1 cut(s) 385
BspPI GGATC 4 cut(s) 304, 362, 413, 444
BspT107I GGYRCC 1 cut(s) 811
BsrFI RCCGGY 1 cut(s) 75
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 3 cut(s) 375, 531, 584
BssMI GATC 6 cut(s) 243, 296, 321, 367, 418, 436
BssNI GRCGYC 1 cut(s) 837
Bst4CI ACNGT 8 cut(s) 26, 160, 290, 469, 602, 672, 688, 766
BstACI GRCGYC 1 cut(s) 837
BstAPI GCANNNNNTGC 2 cut(s) 235, 811
BstBAI YACGTR 1 cut(s) 741
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 5 cut(s) 211, 447, 648, 705, 837
BstFNI CGCG 2 cut(s) 216, 377
BstHHI GCGC 2 cut(s) 88, 216
BstKTI GATC 6 cut(s) 246, 299, 324, 370, 421, 439
BstMAI GTCTC 2 cut(s) 215, 567
BstMBI GATC 6 cut(s) 243, 296, 321, 367, 418, 436
BstMCI CGRYCG 2 cut(s) 80, 375
BstMWI GCNNNNNNNGC 6 cut(s) 27, 85, 235, 300, 483, 811
BstNSI RCATGY 2 cut(s) 492, 582
BstPAI GACNNNNGTC 1 cut(s) 579
BstSCI CCNGG 2 cut(s) 530, 583
BstUI CGCG 2 cut(s) 216, 377
BstV1I GCAGC 7 cut(s) 111, 223, 241, 371, 673, 676, 859
BstX2I RGATCY 2 cut(s) 367, 418
BstYI RGATCY 2 cut(s) 367, 418
BstZI CGGCCG 1 cut(s) 77
BsuRI GGCC 2 cut(s) 79, 195
BtgI CCRYGG 1 cut(s) 375
BtsCI GGATG 5 cut(s) 211, 447, 648, 705, 837
BtsI GCAGTG 2 cut(s) 271, 623
BtsIMutI CAGTG 3 cut(s) 271, 544, 623
BveI ACCTGC 1 cut(s) 385
CaiI CAGNNNCTG 1 cut(s) 622
CfoI GCGC 2 cut(s) 88, 216
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 160
Cfr42I CCGCGG 1 cut(s) 378
CpoI CGGWCCG 1 cut(s) 160
CseI GACGC 2 cut(s) 584, 845
Csp6I GTAC 2 cut(s) 148, 270
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CspI CGGWCCG 1 cut(s) 160
CviAII CATG 5 cut(s) 247, 489, 493, 579, 852
CviQI GTAC 2 cut(s) 148, 270
DdeI CTNAG 1 cut(s) 240
DpnI GATC 6 cut(s) 245, 298, 323, 369, 420, 438
DpnII GATC 6 cut(s) 243, 296, 321, 367, 418, 436
DraI TTTAAA 1 cut(s) 54
DriI GACNNNNNGTC 1 cut(s) 412
EaeI YGGCCR 1 cut(s) 77
EagI CGGCCG 1 cut(s) 77
Eam1105I GACNNNNNGTC 1 cut(s) 412
EciI GGCGGA 2 cut(s) 24, 309
Ecl136II GAGCTC 1 cut(s) 712
EclXI CGGCCG 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 714
Eco47I GGWCC 1 cut(s) 160
Eco52I CGGCCG 1 cut(s) 77
Eco53kI GAGCTC 1 cut(s) 712
Eco72I CACGTG 1 cut(s) 741
EcoICRI GAGCTC 1 cut(s) 712
EcoT22I ATGCAT 1 cut(s) 494
EcoT38I GRGCYC 1 cut(s) 714
Esp3I CGTCTC 1 cut(s) 567
FaeI CATG 5 cut(s) 250, 492, 496, 582, 855
FaiI YATR 9 cut(s) 171, 248, 320, 490, 494, 580, 593, 697, 853
FatI CATG 5 cut(s) 246, 488, 492, 578, 851
Fnu4HI GCNGC 9 cut(s) 125, 212, 230, 360, 378, 662, 665, 857, 873
FokI GGATG 5 cut(s) 218, 454, 655, 712, 844
FriOI GRGCYC 1 cut(s) 714
Fsp4HI GCNGC 9 cut(s) 125, 212, 230, 360, 378, 662, 665, 857, 873
GlaI GCGC 2 cut(s) 87, 215
GluI GCNGC 9 cut(s) 125, 212, 230, 360, 378, 662, 665, 857, 873
HaeIII GGCC 2 cut(s) 79, 195
HapII CCGG 7 cut(s) 76, 102, 363, 531, 584, 677, 840
HgaI GACGC 2 cut(s) 584, 845
HhaI GCGC 2 cut(s) 88, 216
Hin1I GRCGYC 1 cut(s) 837
Hin1II CATG 5 cut(s) 250, 492, 496, 582, 855
Hin6I GCGC 2 cut(s) 86, 214
HinP1I GCGC 2 cut(s) 86, 214
HinfI GANTC 2 cut(s) 455, 775
HpaII CCGG 7 cut(s) 76, 102, 363, 531, 584, 677, 840
HphI GGTGA 5 cut(s) 44, 91, 442, 475, 658
Hpy166II GTNNAC 1 cut(s) 738
Hpy188I TCNGA 7 cut(s) 60, 243, 372, 418, 441, 504, 598
Hpy8I GTNNAC 1 cut(s) 738
Hpy99I CGWCG 3 cut(s) 26, 727, 866
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 8 cut(s) 26, 160, 290, 469, 602, 672, 688, 766
HpyCH4IV ACGT 3 cut(s) 150, 740, 864
HpyCH4V TGCA 4 cut(s) 359, 492, 616, 851
HpyF10VI GCNNNNNNNGC 6 cut(s) 27, 85, 235, 300, 483, 811
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 3 cut(s) 150, 740, 864
Hsp92I GRCGYC 1 cut(s) 837
Hsp92II CATG 5 cut(s) 250, 492, 496, 582, 855
HspAI GCGC 2 cut(s) 86, 214
KspI CCGCGG 1 cut(s) 378
Kzo9I GATC 6 cut(s) 243, 296, 321, 367, 418, 436
LmnI GCTCC 4 cut(s) 250, 505, 629, 709
LpnPI CCDG 8 cut(s) 89, 115, 376, 380, 544, 597, 690, 853
Lsp1109I GCAGC 7 cut(s) 111, 223, 241, 371, 673, 676, 859
LweI GCATC 1 cut(s) 304
MaeII ACGT 3 cut(s) 150, 740, 864
MaeIII GTNAC 4 cut(s) 463, 672, 682, 776
MalI GATC 6 cut(s) 245, 298, 323, 369, 420, 438
MboI GATC 6 cut(s) 243, 296, 321, 367, 418, 436
MboII GAAGA 6 cut(s) 49, 188, 341, 400, 501, 802
MflI RGATCY 2 cut(s) 367, 418
MhlI GDGCHC 1 cut(s) 714
MlyI GAGTC 1 cut(s) 784
MmeI TCCRAC 3 cut(s) 395, 527, 584
Mph1103I ATGCAT 1 cut(s) 494
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 2 cut(s) 53, 867
MslI CAYNNNNRTG 2 cut(s) 491, 767
MspA1I CMGCKG 2 cut(s) 232, 377
MspI CCGG 7 cut(s) 76, 102, 363, 531, 584, 677, 840
MspR9I CCNGG 2 cut(s) 532, 585
Mva1269I GAATGC 1 cut(s) 23
MvnI CGCG 2 cut(s) 216, 377
MwoI GCNNNNNNNGC 6 cut(s) 27, 85, 235, 300, 483, 811
NciI CCSGG 2 cut(s) 532, 585
NdeII GATC 6 cut(s) 243, 296, 321, 367, 418, 436
NlaIII CATG 5 cut(s) 250, 492, 496, 582, 855
NlaIV GGNNCC 2 cut(s) 501, 813
NmeAIII GCCGAG 2 cut(s) 710, 864
NmuCI GTSAC 2 cut(s) 463, 776
NsiI ATGCAT 1 cut(s) 494
NspI RCATGY 2 cut(s) 492, 582
OliI CACNNNNGTG 1 cut(s) 767
PcsI WCGNNNNNNNCGW 3 cut(s) 722, 731, 737
PctI GAATGC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 455
PkrI GCNGC 9 cut(s) 126, 213, 231, 361, 379, 663, 666, 858, 874
PleI GAGTC 1 cut(s) 783
PmaCI CACGTG 1 cut(s) 741
PmlI CACGTG 1 cut(s) 741
PpsI GAGTC 1 cut(s) 783
Ppu21I YACGTR 1 cut(s) 741
PshAI GACNNNNGTC 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 714
PspCI CACGTG 1 cut(s) 741
PspN4I GGNNCC 2 cut(s) 501, 813
PspPI GGNCC 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 622
PsuI RGATCY 2 cut(s) 367, 418
PvuII CAGCTG 1 cut(s) 232
RsaI GTAC 2 cut(s) 149, 271
RsaNI GTAC 2 cut(s) 148, 270
RseI CAYNNNNRTG 2 cut(s) 491, 767
Rsr2I CGGWCCG 1 cut(s) 160
RsrII CGGWCCG 1 cut(s) 160
SacI GAGCTC 1 cut(s) 714
SacII CCGCGG 1 cut(s) 378
SaqAI TTAA 2 cut(s) 53, 867
SatI GCNGC 9 cut(s) 125, 212, 230, 360, 378, 662, 665, 857, 873
Sau3AI GATC 6 cut(s) 243, 296, 321, 367, 418, 436
Sau96I GGNCC 1 cut(s) 160
SchI GAGTC 1 cut(s) 784
ScrFI CCNGG 2 cut(s) 532, 585
SduI GDGCHC 1 cut(s) 714
SfaNI GCATC 1 cut(s) 304
Sfr303I CCGCGG 1 cut(s) 378
SgrBI CCGCGG 1 cut(s) 378
SinI GGWCC 1 cut(s) 160
SmiMI CAYNNNNRTG 2 cut(s) 491, 767
SmlI CTYRAG 1 cut(s) 352
SmoI CTYRAG 1 cut(s) 352
SstI GAGCTC 1 cut(s) 714
StyD4I CCNGG 2 cut(s) 530, 583
TaaI ACNGT 8 cut(s) 26, 160, 290, 469, 602, 672, 688, 766
TaiI ACGT 3 cut(s) 153, 743, 867
TaqI TCGA 2 cut(s) 299, 861
TauI GCSGC 2 cut(s) 380, 859
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 2 cut(s) 53, 867
Tru9I TTAA 2 cut(s) 53, 867
TscAI CASTG 3 cut(s) 271, 544, 623
TseFI GTSAC 2 cut(s) 463, 776
TseI GCWGC 7 cut(s) 124, 211, 229, 359, 661, 664, 872
Tsp45I GTSAC 2 cut(s) 463, 776
TspDTI ATGAA 3 cut(s) 195, 580, 716
TspGWI ACGGA 2 cut(s) 218, 642
TspRI CASTG 3 cut(s) 271, 544, 623
VpaK11BI GGWCC 1 cut(s) 160
XceI RCATGY 2 cut(s) 492, 582
XmnI GAANNNNTTC 1 cut(s) 95
Zsp2I ATGCAT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.