Rorug02G0578600

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001258
Physical Location & Seq
Reverse (-)
70198213 .. 70200977
2765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0578600.1

Sequence Viewer

Length: 747 bp
ATGATTCTCACAAAGCAGTATCGATGTATACATTCTGCAAGCTGTCAATGCACAAAAGGGCATCTAAGTGAAGATGCTATATTCCTTGTATTTCAACAATTGAATTGGAATCCTAAGTTAATAGCAACACTTTCCTGTGTCTGCAAATGGTTTGATGATCTTGCCAAACGTGTACTGTGGAAGGAGTTTTGTAAAACAAGAGCACCAAAGATGATGATTGATTTGCAATCTAGTGGGAGTCACAGTGTAGATGGAAACTGGAGGGCACTTGGAAAACTGCTTATTTACTGTTCAGGAAGTAAGAAGGGCGGCCTCTTTAATACCGTTCATATCCCTGGTCACTTTGTCTATAGGACCAGGTTTTCTAGGACATCGGGGAAGAGCTTCCTTTTGCCACAATGCAGAACAGATGTATTGTATGTCTCTGACCCGTGTGAACATCTTGACCAAGGAGAAGAGGGAGATGTGGGTTTCTTCCGGGGAATTTTCAAGTCGTTCTCAATGTCAAAGGTCCGGAAGATGTTGATTAAAAGAGAGGCCCAATTTCATCCGACAGAGGTGTGCCCTTACTGTAAGGCCAAGTTGTGGAGCATGTTGCAAGCCAAAATGATACCTCAAAGTGCCAGCTGCAGATTGGGCGCTTATGAGGATTGCATTGAGTATTTTGTTTGCCTCAATGGACATATGCTCGGTATTTGTACTCTGTTACCTTTATCTGATTCAGAAGAGGCATCGGAGTTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

28.21

Weight (kDa)

8.68

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 585
AccI GTMKAC 1 cut(s) 28
AccIII TCCGGA 1 cut(s) 513
AciI CCGC 1 cut(s) 309
AcsI RAATTY 1 cut(s) 483
AfaI GTAC 2 cut(s) 174, 700
AfiI CCNNNNNNNGG 1 cut(s) 585
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 3 cut(s) 95, 103, 490
AjnI CCWGG 2 cut(s) 334, 356
AluBI AGCT 3 cut(s) 42, 384, 627
AluI AGCT 3 cut(s) 42, 384, 627
Alw21I GWGCWC 1 cut(s) 205
Alw26I GTCTC 1 cut(s) 427
Aor13HI TCCGGA 1 cut(s) 513
AoxI GGCC 3 cut(s) 310, 537, 576
ApeKI GCWGC 1 cut(s) 627
ApoI RAATTY 1 cut(s) 483
Asp700I GAANNNNTTC 1 cut(s) 383
AspLEI GCGC 1 cut(s) 641
AspS9I GGNCC 3 cut(s) 354, 511, 538
AsuC2I CCSGG 1 cut(s) 479
AvaII GGWCC 2 cut(s) 354, 511
BaeGI GKGCMC 2 cut(s) 268, 566
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 614
BccI CCATC 1 cut(s) 245
BciT130I CCWGG 2 cut(s) 336, 358
BcnI CCSGG 1 cut(s) 479
BcoDI GTCTC 1 cut(s) 427
BfaI CTAG 2 cut(s) 231, 366
BfmI CTRYAG 2 cut(s) 349, 628
BfoI RGCGCY 1 cut(s) 642
BisI GCNGC 2 cut(s) 310, 628
BlsI GCNGC 2 cut(s) 311, 629
Bme1390I CCNGG 3 cut(s) 336, 358, 479
Bme18I GGWCC 2 cut(s) 354, 511
BmgT120I GGNCC 3 cut(s) 354, 511, 538
BmrFI CCNGG 3 cut(s) 336, 358, 479
BmsI GCATC 3 cut(s) 64, 70, 740
BpmI CTGGAG 1 cut(s) 280
BpuMI CCSGG 1 cut(s) 479
Bsa29I ATCGAT 1 cut(s) 22
BsaJI CCNNGG 3 cut(s) 334, 448, 478
BsaWI WCCGGW 1 cut(s) 513
BsaXI ACNNNNNCTCC 3 cut(s) 229, 259, 728
Bsc4I CCNNNNNNNGG 1 cut(s) 585
Bse1I ACTGG 1 cut(s) 263
BseAI TCCGGA 1 cut(s) 513
BseBI CCWGG 2 cut(s) 336, 358
BseCI ATCGAT 1 cut(s) 22
BseDI CCNNGG 3 cut(s) 334, 448, 478
BseGI GGATG 1 cut(s) 547
BseLI CCNNNNNNNGG 1 cut(s) 585
BseNI ACTGG 1 cut(s) 263
BseSI GKGCMC 2 cut(s) 268, 566
BseXI GCAGC 1 cut(s) 614
BshFI GGCC 3 cut(s) 312, 539, 578
BshVI ATCGAT 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 205
BsiSI CCGG 2 cut(s) 478, 514
BslI CCNNNNNNNGG 1 cut(s) 585
BsmAI GTCTC 1 cut(s) 427
BsnI GGCC 3 cut(s) 312, 539, 578
Bsp1286I GDGCHC 3 cut(s) 205, 268, 566
Bsp13I TCCGGA 1 cut(s) 513
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 309
BspANI GGCC 3 cut(s) 312, 539, 578
BspDI ATCGAT 1 cut(s) 22
BspEI TCCGGA 1 cut(s) 513
BspMAI CTGCAG 1 cut(s) 632
BspQI GCTCTTC 1 cut(s) 374
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 3 cut(s) 334, 448, 478
BssMI GATC 1 cut(s) 157
BssNAI GTATAC 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 448
Bst1107I GTATAC 1 cut(s) 29
Bst2UI CCWGG 2 cut(s) 336, 358
Bst4CI ACNGT 5 cut(s) 177, 245, 290, 325, 572
Bst6I CTCTTC 3 cut(s) 374, 450, 720
BstC8I GCNNGC 3 cut(s) 40, 600, 625
BstDEI CTNAG 2 cut(s) 65, 114
BstF5I GGATG 1 cut(s) 547
BstH2I RGCGCY 1 cut(s) 642
BstHHI GCGC 1 cut(s) 641
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 1 cut(s) 427
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 48, 636
BstNI CCWGG 2 cut(s) 336, 358
BstNSI RCATGY 1 cut(s) 595
BstSCI CCNGG 3 cut(s) 334, 356, 477
BstSFI CTRYAG 2 cut(s) 349, 628
BstSLI GKGCMC 2 cut(s) 268, 566
BstV1I GCAGC 1 cut(s) 614
BstZ17I GTATAC 1 cut(s) 29
Bsu15I ATCGAT 1 cut(s) 22
BsuRI GGCC 3 cut(s) 312, 539, 578
BsuTUI ATCGAT 1 cut(s) 22
BtsCI GGATG 1 cut(s) 547
BtsIMutI CAGTG 1 cut(s) 250
Cac8I GCNNGC 3 cut(s) 40, 600, 625
CfoI GCGC 1 cut(s) 641
Cfr13I GGNCC 3 cut(s) 354, 511, 538
ClaI ATCGAT 1 cut(s) 22
CsiI ACCWGGT 1 cut(s) 356
Csp6I GTAC 2 cut(s) 173, 699
CviAII CATG 1 cut(s) 592
CviJI RGCY 7 cut(s) 42, 312, 384, 539, 578, 602, 627
CviKI_1 RGCY 7 cut(s) 42, 312, 384, 539, 578, 602, 627
CviQI GTAC 2 cut(s) 173, 699
DdeI CTNAG 2 cut(s) 65, 114
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eam1104I CTCTTC 3 cut(s) 374, 450, 720
EarI CTCTTC 3 cut(s) 374, 450, 720
Eco130I CCWWGG 1 cut(s) 448
Eco47I GGWCC 2 cut(s) 354, 511
EcoRII CCWGG 2 cut(s) 334, 356
EcoT14I CCWWGG 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 448
FaeI CATG 1 cut(s) 595
FaiI YATR 9 cut(s) 29, 80, 330, 351, 420, 593, 645, 684, 686
FatI CATG 1 cut(s) 591
FauNDI CATATG 1 cut(s) 684
FblI GTMKAC 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 310, 628
FokI GGATG 1 cut(s) 534
Fsp4HI GCNGC 2 cut(s) 310, 628
FspBI CTAG 2 cut(s) 231, 366
GlaI GCGC 1 cut(s) 640
GluI GCNGC 2 cut(s) 310, 628
GsuI CTGGAG 1 cut(s) 280
HaeII RGCGCY 1 cut(s) 642
HaeIII GGCC 3 cut(s) 312, 539, 578
HapII CCGG 2 cut(s) 478, 514
HhaI GCGC 1 cut(s) 641
Hin1II CATG 1 cut(s) 595
Hin6I GCGC 1 cut(s) 639
HinP1I GCGC 1 cut(s) 639
HinfI GANTC 4 cut(s) 4, 109, 238, 719
HpaII CCGG 2 cut(s) 478, 514
Hpy166II GTNNAC 3 cut(s) 29, 173, 437
Hpy188I TCNGA 5 cut(s) 427, 552, 718, 724, 736
Hpy188III TCNNGA 3 cut(s) 294, 443, 514
Hpy8I GTNNAC 3 cut(s) 29, 173, 437
HpyAV CCTTC 2 cut(s) 175, 298
HpyCH4III ACNGT 5 cut(s) 177, 245, 290, 325, 572
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 8 cut(s) 38, 51, 144, 226, 402, 598, 630, 654
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 636
HpyF3I CTNAG 2 cut(s) 65, 114
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 1 cut(s) 595
HspAI GCGC 1 cut(s) 639
Kpn2I TCCGGA 1 cut(s) 513
Kzo9I GATC 1 cut(s) 157
LguI GCTCTTC 1 cut(s) 374
LmnI GCTCC 1 cut(s) 588
Lsp1109I GCAGC 1 cut(s) 614
LweI GCATC 3 cut(s) 64, 70, 740
MabI ACCWGGT 1 cut(s) 356
MaeI CTAG 2 cut(s) 231, 366
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 3 cut(s) 239, 338, 705
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 6 cut(s) 83, 391, 466, 467, 529, 737
MfeI CAATTG 1 cut(s) 98
MhlI GDGCHC 3 cut(s) 205, 268, 566
MluCI AATT 4 cut(s) 98, 103, 483, 542
MlyI GAGTC 1 cut(s) 247
MmeI TCCRAC 2 cut(s) 575, 720
MnlI CCTC 9 cut(s) 255, 323, 451, 529, 550, 624, 640, 683, 721
MroI TCCGGA 1 cut(s) 513
MroXI GAANNNNTTC 1 cut(s) 383
MseI TTAA 3 cut(s) 119, 318, 528
MslI CAYNNNNRTG 1 cut(s) 66
MspA1I CMGCKG 1 cut(s) 627
MspI CCGG 2 cut(s) 478, 514
MspR9I CCNGG 3 cut(s) 336, 358, 479
MunI CAATTG 1 cut(s) 98
MvaI CCWGG 2 cut(s) 336, 358
MwoI GCNNNNNNNGC 2 cut(s) 48, 636
NciI CCSGG 1 cut(s) 479
NdeI CATATG 1 cut(s) 684
NdeII GATC 1 cut(s) 157
NlaIII CATG 1 cut(s) 595
NmuCI GTSAC 2 cut(s) 239, 338
NspI RCATGY 1 cut(s) 595
PciSI GCTCTTC 1 cut(s) 374
PdmI GAANNNNTTC 1 cut(s) 383
PfeI GAWTC 3 cut(s) 4, 109, 719
PflMI CCANNNNNTGG 1 cut(s) 585
PkrI GCNGC 2 cut(s) 311, 629
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
Psp6I CCWGG 2 cut(s) 334, 356
PspGI CCWGG 2 cut(s) 334, 356
PspPI GGNCC 3 cut(s) 354, 511, 538
PstI CTGCAG 1 cut(s) 632
PvuII CAGCTG 1 cut(s) 627
RsaI GTAC 2 cut(s) 174, 700
RsaNI GTAC 2 cut(s) 173, 699
RseI CAYNNNNRTG 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 374
SaqAI TTAA 3 cut(s) 119, 318, 528
SatI GCNGC 2 cut(s) 310, 628
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 3 cut(s) 354, 511, 538
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 3 cut(s) 336, 358, 479
SduI GDGCHC 3 cut(s) 205, 268, 566
SetI ASST 9 cut(s) 44, 172, 362, 386, 513, 561, 616, 629, 712
SexAI ACCWGGT 1 cut(s) 356
SfaNI GCATC 3 cut(s) 64, 70, 740
SfcI CTRYAG 2 cut(s) 349, 628
SinI GGWCC 2 cut(s) 354, 511
SmiMI CAYNNNNRTG 1 cut(s) 66
Sse9I AATT 4 cut(s) 98, 103, 483, 542
SsiI CCGC 1 cut(s) 309
SspMI CTAG 2 cut(s) 231, 366
StyD4I CCNGG 3 cut(s) 334, 356, 477
StyI CCWWGG 1 cut(s) 448
TaaI ACNGT 5 cut(s) 177, 245, 290, 325, 572
TaiI ACGT 1 cut(s) 172
TaqI TCGA 1 cut(s) 22
TasI AATT 4 cut(s) 98, 103, 483, 542
TatI WGTACW 2 cut(s) 172, 698
TauI GCSGC 1 cut(s) 312
TfiI GAWTC 3 cut(s) 4, 109, 719
Tru1I TTAA 3 cut(s) 119, 318, 528
Tru9I TTAA 3 cut(s) 119, 318, 528
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 2 cut(s) 239, 338
TseI GCWGC 1 cut(s) 627
Tsp45I GTSAC 2 cut(s) 239, 338
TspDTI ATGAA 2 cut(s) 317, 536
TspRI CASTG 1 cut(s) 250
Van91I CCANNNNNTGG 1 cut(s) 585
VpaK11BI GGWCC 2 cut(s) 354, 511
XapI RAATTY 1 cut(s) 483
XceI RCATGY 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XmiI GTMKAC 1 cut(s) 28
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 2 cut(s) 231, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.