Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001258

Physical Location & Seq

Genomic Coordinates Reverse (-)

28444433 .. 28446065

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g27450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAAGGCAAAGGTGTTGAGGGTTCTTCTGTTTTGAATCGGATGATGCTCAAGTACCGCCCGATTGCGCCGAAACCCTTCACCGGAGGCATGCCTTCGGACAAGCTGCCCAAAAGGACCAAGAGAAGGTACGTTAGGAAGCAACAAACCGAGAAGCGCGAAATGACGGGCAAACAGCGCGTGGAGACACTGCAGCTGTTTCCTCTGATGATAGAGGAGAGTGGTAGCAGCTGCTGTTCCGATCGCTCCGAGCACGGTGGCGGATCTAGCTGTGAGGTTGATGCTAGGGTTGGAGACGACAATCATTGGTTGAGCCTGGGTGTAACGGCGGTGACAGGGAAGACACAGGTTGAGAGCACGTCAGATCCGTCGGTGGTGATGGATCGGATGGGAGGAGAGGAGTCGTGGGTGACGGTGGAGTGCGTGAGAGGCACATGCATGACGGCTCCGACTTCTTCTCAATCGTTTCTGCTTGGTTTGTCCGGGGTCAGTGCAGACGAAGAGAGAATGAGAAGATTGGAGATCGACACCAGTCCGGGGTTCATATCAGACTGTTGGAACAGAGTGCACTGGCTGAACGGAGCTTTTATGAGGATGACGACGACGACGAGGAGGCAGCAGCAAGTGTTGCCGGAGGTAACAGTGTGGTTATGGATGAATGAGGAGCTGCCGCACACGACGAACACGGCGTTCACTTGCCAAGTGAAACTGAAATACACTGTGGTGGAGTGTCAGAAGAAGGTCAAGAACTACTGCTCGCAGTTGGTGCCTTGTGATTTGTGGAGGATGGACGGCGGAGGGTTTGCATGGCGGCTCGACGTTAAAGCTGCGCTCACTCTCAACGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

31.66

Weight (kDa)

8.5

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7950	PF25821	134 - 279	1.5e-42	Domain of unknown function (DUF7950)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27250 AT3G27250 AT5G40800
fragaria_vesca	FvH4_4g27450 FvH4_4g30960 FvH4_4g30960 FvH4_4g30960 FvH4_4g30960 FvH4_6g52950 FvH4_6g52960 FvH4_6g52960 FvH4_6g52960 FvH4_6g52960
malus_domestica	MD09G1015700.v1.1 MD09G1015800.v1.1 MD17G1016100.v1.1 MD17G1016200.v1.1
prunus_persica	Prupe.3G301500_v2.0.a1 Prupe.3G301600_v2.0.a1
pyrus_communis	pycom111g01280 pycom111g01290 pycom17g01300 pycom17g01310
rosa_chinensis	RchiOBHm_Chr2g0174661 RchiOBHm_Chr2g0174671 RchiOBHm_Chr4g0439311
rosa_laevigata	RLG00000006281 RLG00000022282 RLG00000022283
rosa_multiflora	Rmu_co8201038.1_g000001 Rmu_sc0007189.1_g000004 Rmu_sc0007189.1_g000005 Rmu_ssc0000171.1_g000012
rosa_roxburghii	Rroxscaffold_2G00077950 Rroxscaffold_2G00077960 Rroxscaffold_5G00380260
rosa_rugosa	Rorug02G0578600 Rorug02G0578600 Rorug04G0317300 Rorug04G0317400.1
rosa_samantha	Rh2AG659800 Rh2AG659900 Rh2BG041900 Rh2BG670700 Rh2BG670800 Rh2CG633800 Rh2CG633900 Rh2DG684200 Rh2DG684300 Rh4BG380100 Rh4CG394500 Rh4DG374500
rosa_wichuraiana	Rw0G002730 Rw2G054040 Rw2G054050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	766
AccII	CGCG	2 cut(s)	159, 180
AciI	CCGC	6 cut(s)	58, 261, 329, 671, 795, 811
AclWI	GGATC	3 cut(s)	271, 359, 390
AfaI	GTAC	2 cut(s)	56, 131
AfiI	CCNNNNNNNGG	3 cut(s)	83, 126, 537
AgsI	TTSAA	1 cut(s)	37
AjiI	CACGTC	1 cut(s)	360
AjnI	CCWGG	1 cut(s)	315
AleI	CACNNNNGTG	1 cut(s)	722
AluBI	AGCT	7 cut(s)	106, 196, 231, 270, 584, 667, 827
AluI	AGCT	7 cut(s)	106, 196, 231, 270, 584, 667, 827
Alw21I	GWGCWC	3 cut(s)	255, 359, 570
Alw26I	GTCTC	2 cut(s)	179, 288
Alw44I	GTGCAC	1 cut(s)	566
AlwI	GGATC	3 cut(s)	271, 359, 390
AlwNI	CAGNNNCTG	1 cut(s)	234
ApaLI	GTGCAC	1 cut(s)	566
ApeKI	GCWGC	8 cut(s)	106, 193, 228, 231, 616, 619, 667, 827
Asp700I	GAANNNNTTC	1 cut(s)	77
AspLEI	GCGC	4 cut(s)	70, 159, 180, 832
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	2 cut(s)	484, 537
AsuHPI	GGTGA	4 cut(s)	73, 343, 388, 421
AvaII	GGWCC	1 cut(s)	117
BaeGI	GKGCMC	1 cut(s)	570
BanI	GGYRCC	1 cut(s)	766
BbsI	GAAGAC	1 cut(s)	347
Bbv12I	GWGCWC	3 cut(s)	255, 359, 570
BbvI	GCAGC	8 cut(s)	93, 205, 218, 240, 628, 631, 654, 814
BccI	CCATC	3 cut(s)	373, 382, 781
BceAI	ACGGC	4 cut(s)	342, 459, 702, 808
BciT130I	CCWGG	1 cut(s)	317
BcnI	CCSGG	2 cut(s)	484, 537
BcoDI	GTCTC	2 cut(s)	179, 288
BfaI	CTAG	2 cut(s)	267, 285
BfmI	CTRYAG	1 cut(s)	191
Bme1390I	CCNGG	3 cut(s)	317, 484, 537
Bme18I	GGWCC	1 cut(s)	117
BmgBI	CACGTC	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	2 cut(s)	447, 768
BmrFI	CCNGG	3 cut(s)	317, 484, 537
BmsI	GCATC	2 cut(s)	36, 271
BoxI	GACNNNNGTC	1 cut(s)	531
BpiI	GAAGAC	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	2 cut(s)	484, 537
BsaJI	CCNNGG	3 cut(s)	316, 483, 536
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 126, 537
Bse1I	ACTGG	2 cut(s)	531, 575
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	3 cut(s)	316, 483, 536
BseGI	GGATG	5 cut(s)	48, 393, 600, 660, 792
BseLI	CCNNNNNNNGG	3 cut(s)	83, 126, 537
BseNI	ACTGG	2 cut(s)	531, 575
BseRI	GAGGAG	5 cut(s)	230, 408, 413, 625, 677
BseSI	GKGCMC	1 cut(s)	570
BseXI	GCAGC	8 cut(s)	93, 205, 218, 240, 628, 631, 654, 814
BsgI	GTGCAG	1 cut(s)	513
Bsh1236I	CGCG	2 cut(s)	159, 180
Bsh1285I	CGRYCG	1 cut(s)	244
BshNI	GGYRCC	1 cut(s)	766
BsiEI	CGRYCG	1 cut(s)	244
BsiHKAI	GWGCWC	3 cut(s)	255, 359, 570
BsiSI	CCGG	4 cut(s)	84, 483, 536, 632
BslI	CCNNNNNNNGG	3 cut(s)	83, 126, 537
BsmAI	GTCTC	2 cut(s)	179, 288
BsmBI	CGTCTC	1 cut(s)	288
Bsp1286I	GDGCHC	3 cut(s)	255, 359, 570
Bsp143I	GATC	5 cut(s)	241, 263, 364, 382, 522
BspACI	CCGC	6 cut(s)	58, 261, 329, 671, 795, 811
BspFNI	CGCG	2 cut(s)	159, 180
BspLI	GGNNCC	2 cut(s)	447, 768
BspMAI	CTGCAG	1 cut(s)	195
BspPI	GGATC	3 cut(s)	271, 359, 390
BspT107I	GGYRCC	1 cut(s)	766
BsrI	ACTGG	2 cut(s)	531, 575
BssECI	CCNNGG	3 cut(s)	316, 483, 536
BssMI	GATC	5 cut(s)	241, 263, 364, 382, 522
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	5 cut(s)	257, 415, 554, 643, 721
Bst6I	CTCTTC	1 cut(s)	495
BstAPI	GCANNNNNTGC	2 cut(s)	628, 766
BstC8I	GCNNGC	2 cut(s)	92, 758
BstF5I	GGATG	5 cut(s)	48, 393, 600, 660, 792
BstFNI	CGCG	2 cut(s)	159, 180
BstHHI	GCGC	4 cut(s)	70, 159, 180, 832
BstKTI	GATC	5 cut(s)	244, 266, 367, 385, 525
BstMAI	GTCTC	2 cut(s)	179, 288
BstMBI	GATC	5 cut(s)	241, 263, 364, 382, 522
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	5 cut(s)	177, 267, 429, 628, 766
BstNI	CCWGG	1 cut(s)	317
BstNSI	RCATGY	2 cut(s)	94, 438
BstPAI	GACNNNNGTC	1 cut(s)	531
BstSCI	CCNGG	3 cut(s)	315, 482, 535
BstSFI	CTRYAG	1 cut(s)	191
BstSLI	GKGCMC	1 cut(s)	570
BstUI	CGCG	2 cut(s)	159, 180
BstV1I	GCAGC	8 cut(s)	93, 205, 218, 240, 628, 631, 654, 814
BstV2I	GAAGAC	1 cut(s)	347
BstX2I	RGATCY	2 cut(s)	263, 364
BstYI	RGATCY	2 cut(s)	263, 364
BtrI	CACGTC	1 cut(s)	360
BtsCI	GGATG	5 cut(s)	48, 393, 600, 660, 792
BtsI	GCAGTG	1 cut(s)	188
BtsIMutI	CAGTG	5 cut(s)	188, 496, 568, 648, 717
Cac8I	GCNNGC	2 cut(s)	92, 758
CaiI	CAGNNNCTG	1 cut(s)	234
CfoI	GCGC	4 cut(s)	70, 159, 180, 832
Cfr13I	GGNCC	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	55, 130
CviAII	CATG	4 cut(s)	91, 435, 439, 807
CviQI	GTAC	2 cut(s)	55, 130
DpnI	GATC	5 cut(s)	243, 265, 366, 384, 524
DpnII	GATC	5 cut(s)	241, 263, 364, 382, 522
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
EciI	GGCGGA	2 cut(s)	276, 810
Eco47I	GGWCC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	315
EcoT22I	ATGCAT	1 cut(s)	440
Esp3I	CGTCTC	1 cut(s)	288
FaeI	CATG	4 cut(s)	94, 438, 442, 810
FaiI	YATR	7 cut(s)	92, 436, 440, 545, 590, 652, 808
FatI	CATG	4 cut(s)	90, 434, 438, 806
FokI	GGATG	5 cut(s)	55, 400, 607, 667, 799
FspBI	CTAG	2 cut(s)	267, 285
GlaI	GCGC	4 cut(s)	69, 158, 179, 831
HapII	CCGG	4 cut(s)	84, 483, 536, 632
HhaI	GCGC	4 cut(s)	70, 159, 180, 832
Hin1II	CATG	4 cut(s)	94, 438, 442, 810
Hin6I	GCGC	4 cut(s)	68, 157, 178, 830
HinP1I	GCGC	4 cut(s)	68, 157, 178, 830
HinfI	GANTC	2 cut(s)	37, 401
HpaII	CCGG	4 cut(s)	84, 483, 536, 632
HphI	GGTGA	4 cut(s)	73, 343, 388, 421
Hpy166II	GTNNAC	2 cut(s)	568, 693
Hpy188III	TCNNGA	1 cut(s)	745
Hpy8I	GTNNAC	2 cut(s)	568, 693
Hpy99I	CGWCG	6 cut(s)	373, 604, 607, 610, 682, 821
HpyAV	CCTTC	4 cut(s)	88, 105, 120, 733
HpyCH4III	ACNGT	5 cut(s)	257, 415, 554, 643, 721
HpyCH4IV	ACGT	3 cut(s)	132, 359, 819
HpyCH4V	TGCA	5 cut(s)	193, 438, 494, 568, 806
HpyF10VI	GCNNNNNNNGC	5 cut(s)	177, 267, 429, 628, 766
HpySE526I	ACGT	3 cut(s)	132, 359, 819
Hsp92II	CATG	4 cut(s)	94, 438, 442, 810
HspAI	GCGC	4 cut(s)	68, 157, 178, 830
Kzo9I	GATC	5 cut(s)	241, 263, 364, 382, 522
LmnI	GCTCC	4 cut(s)	251, 451, 581, 664
Lsp1109I	GCAGC	8 cut(s)	93, 205, 218, 240, 628, 631, 654, 814
LweI	GCATC	2 cut(s)	36, 271
MaeI	CTAG	2 cut(s)	267, 285
MaeII	ACGT	3 cut(s)	132, 359, 819
MaeIII	GTNAC	4 cut(s)	322, 331, 409, 637
MalI	GATC	5 cut(s)	243, 265, 366, 384, 524
MboI	GATC	5 cut(s)	241, 263, 364, 382, 522
MboII	GAAGA	6 cut(s)	18, 352, 447, 512, 525, 748
MflI	RGATCY	2 cut(s)	263, 364
MhlI	GDGCHC	3 cut(s)	255, 359, 570
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	3 cut(s)	271, 473, 536
Mph1103I	ATGCAT	1 cut(s)	440
MroXI	GAANNNNTTC	1 cut(s)	77
MseI	TTAA	1 cut(s)	822
MslI	CAYNNNNRTG	2 cut(s)	437, 722
MspA1I	CMGCKG	2 cut(s)	196, 231
MspI	CCGG	4 cut(s)	84, 483, 536, 632
MspR9I	CCNGG	3 cut(s)	317, 484, 537
MvaI	CCWGG	1 cut(s)	317
MvnI	CGCG	2 cut(s)	159, 180
MwoI	GCNNNNNNNGC	5 cut(s)	177, 267, 429, 628, 766
NciI	CCSGG	2 cut(s)	484, 537
NdeII	GATC	5 cut(s)	241, 263, 364, 382, 522
NlaIII	CATG	4 cut(s)	94, 438, 442, 810
NlaIV	GGNNCC	2 cut(s)	447, 768
NmuCI	GTSAC	2 cut(s)	331, 409
NsiI	ATGCAT	1 cut(s)	440
NspI	RCATGY	2 cut(s)	94, 438
OliI	CACNNNNGTG	1 cut(s)	722
PaeI	GCATGC	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	3 cut(s)	365, 605, 686
PdmI	GAANNNNTTC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	37
Ple19I	CGATCG	1 cut(s)	244
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
PshAI	GACNNNNGTC	1 cut(s)	531
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	2 cut(s)	447, 768
PspPI	GGNCC	1 cut(s)	117
PstI	CTGCAG	1 cut(s)	195
PstNI	CAGNNNCTG	1 cut(s)	234
PsuI	RGATCY	2 cut(s)	263, 364
PvuI	CGATCG	1 cut(s)	244
PvuII	CAGCTG	2 cut(s)	196, 231
RsaI	GTAC	2 cut(s)	56, 131
RsaNI	GTAC	2 cut(s)	55, 130
RseI	CAYNNNNRTG	2 cut(s)	437, 722
SaqAI	TTAA	1 cut(s)	822
Sau3AI	GATC	5 cut(s)	241, 263, 364, 382, 522
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	3 cut(s)	317, 484, 537
SduI	GDGCHC	3 cut(s)	255, 359, 570
SfaNI	GCATC	2 cut(s)	36, 271
SfcI	CTRYAG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	117
SmiMI	CAYNNNNRTG	2 cut(s)	437, 722
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SphI	GCATGC	1 cut(s)	94
SsiI	CCGC	6 cut(s)	58, 261, 329, 671, 795, 811
SspMI	CTAG	2 cut(s)	267, 285
StyD4I	CCNGG	3 cut(s)	315, 482, 535
TaaI	ACNGT	5 cut(s)	257, 415, 554, 643, 721
TaiI	ACGT	3 cut(s)	135, 362, 822
TaqI	TCGA	2 cut(s)	525, 816
TauI	GCSGC	2 cut(s)	673, 814
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	822
Tru9I	TTAA	1 cut(s)	822
TscAI	CASTG	5 cut(s)	195, 496, 575, 648, 724
TseFI	GTSAC	2 cut(s)	331, 409
TseI	GCWGC	8 cut(s)	106, 193, 228, 231, 616, 619, 667, 827
Tsp45I	GTSAC	2 cut(s)	331, 409
TspDTI	ATGAA	2 cut(s)	532, 671
TspGWI	ACGGA	2 cut(s)	357, 594
TspRI	CASTG	5 cut(s)	195, 496, 575, 648, 724
VneI	GTGCAC	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	117
XceI	RCATGY	2 cut(s)	94, 438
XmnI	GAANNNNTTC	1 cut(s)	77
XspI	CTAG	2 cut(s)	267, 285
Zsp2I	ATGCAT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.