Rroxscaffold_2G00077950

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001258
Physical Location & Seq
Forward (+)
1385916 .. 1393330
7415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00077950.1

Sequence Viewer

Length: 891 bp
ATGGACGGCGGAGATGAGTGGCACGCGGCAGCTGGCTGTGGAGGTGGAAAAGAAAAAACGGTTATTAACCGGATAATGCTCAGATTCCGTCCAATCGCACCCAGACCGGTCCTCGGAGCATCCTGTTCAGGTGAGATTGTCCCGGAGGGGAAGAACAAAAGCTTGTATTCTCCGAGTAAGAGAGTTAAGAGGAAGTACATTCGGACCAAGAAAGGTAGCAGATCTTCAACTGGAGATCCACAAGGCGGTGTCATGGACTCGACCACCATCACGCTTCAGCTGTTGCCCGGAGAAAGAGGCTCCGGAGATACTTCAGGTAGTAGATCTTGGTTGAGTATTGACCAGGCGGTTGAGAAAAACCCGCATATTCAGGACCACCTATGGGTGAACACGCGAACTTTGAATAGCTGGCCGGAGATAACGGATGCGGTGGCTGAAGCTGACCGGAGGTTGGTGGCAGCGGCTCCGGTGGTGGCTGTGGAGTCGTGGGTGACGGTGGAAAGCGTGACAGACACGTGCATGGATGTTCGAGGCTTAGGTTGTACGGACAGGGAGAAAGCAGGGAGTTTGGAGAAGGACACGTGTCCGGGATTTATATCAGACGGTTTTAACAGAGTTCAGTGGGTGAACGAGGCTTATAAGGACATGGTGAGGCAAGGGGGGAATTACTACTGTGACCGGCAGTCGCCGGAGGTGAGGGTTTGGCTGGTCACGAAGGCGGAGTTGCCGGCAAATGGACACCCGGCTTTCAGTTGTAGGGTGAGGCTGCAGTACATGTGTCAGAAGGACAAGTGTTCGAAACTGGTGCCCTGTGATGTGTGGAGGATGCAGGAGGGTGCTGGGTTGGCTTGGAGGCTAGACATGAAGGCTGCGCTCAGTTTGGGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

296

Amino Acids

32.58

Weight (kDa)

8.77

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 160 - 293 5.4e-57 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 639
AccB1I GGYRCC 1 cut(s) 805
AccII CGCG 2 cut(s) 26, 394
AccIII TCCGGA 1 cut(s) 302
AciI CCGC 8 cut(s) 9, 26, 246, 347, 362, 428, 461, 719
AclWI GGATC 1 cut(s) 230
AcoI YGGCCR 1 cut(s) 410
AcuI CTGAAG 3 cut(s) 260, 297, 456
AcvI CACGTG 2 cut(s) 516, 582
AfaI GTAC 3 cut(s) 197, 544, 773
AfiI CCNNNNNNNGG 5 cut(s) 113, 245, 382, 451, 734
AflIII ACRYGT 4 cut(s) 513, 579, 581, 774
AgeI ACCGGT 1 cut(s) 106
AgsI TTSAA 2 cut(s) 228, 403
AhdI GACNNNNNGTC 1 cut(s) 682
AjnI CCWGG 1 cut(s) 342
AluBI AGCT 5 cut(s) 32, 162, 280, 408, 440
AluI AGCT 5 cut(s) 32, 162, 280, 408, 440
AlwI GGATC 1 cut(s) 230
Aor13HI TCCGGA 1 cut(s) 302
AoxI GGCC 1 cut(s) 410
ApeKI GCWGC 4 cut(s) 29, 458, 766, 869
AsiGI ACCGGT 1 cut(s) 106
AspLEI GCGC 1 cut(s) 874
AspS9I GGNCC 3 cut(s) 109, 204, 373
AsuC2I CCSGG 4 cut(s) 143, 288, 588, 743
AsuHPI GGTGA 7 cut(s) 143, 397, 502, 637, 661, 706, 772
AsuII TTCGAA 1 cut(s) 797
AvaII GGWCC 3 cut(s) 109, 204, 373
BaeGI GKGCMC 1 cut(s) 810
BanI GGYRCC 1 cut(s) 805
BarI GAAGNNNNNNTAC 2 cut(s) 208, 240
BbrPI CACGTG 2 cut(s) 516, 582
BbvI GCAGC 4 cut(s) 41, 470, 753, 856
BccI CCATC 1 cut(s) 275
BceAI ACGGC 1 cut(s) 22
BcgI CGANNNNNNTGC 2 cut(s) 787, 821
BciT130I CCWGG 1 cut(s) 344
BcnI CCSGG 4 cut(s) 143, 288, 588, 743
BfaI CTAG 1 cut(s) 857
BfmI CTRYAG 1 cut(s) 767
BglII AGATCT 2 cut(s) 221, 323
BisI GCNGC 6 cut(s) 27, 30, 459, 462, 767, 870
BlsI GCNGC 6 cut(s) 28, 31, 460, 463, 768, 871
Bme1390I CCNGG 5 cut(s) 143, 288, 344, 588, 743
Bme18I GGWCC 3 cut(s) 109, 204, 373
BmeRI GACNNNNNGTC 1 cut(s) 682
BmgT120I GGNCC 3 cut(s) 109, 204, 373
BmiI GGNNCC 3 cut(s) 301, 465, 807
BmrFI CCNGG 5 cut(s) 143, 288, 344, 588, 743
BmsI GCATC 3 cut(s) 128, 415, 816
BoxI GACNNNNGTC 1 cut(s) 582
BpmI CTGGAG 1 cut(s) 252
Bpu10I CCTNAGC 1 cut(s) 535
Bpu14I TTCGAA 1 cut(s) 797
BpuMI CCSGG 4 cut(s) 143, 288, 588, 743
BsaAI YACGTR 2 cut(s) 516, 582
BsaBI GATNNNNATC 1 cut(s) 595
BsaJI CCNNGG 1 cut(s) 112
BsaWI WCCGGW 5 cut(s) 69, 106, 302, 444, 466
Bsc4I CCNNNNNNNGG 5 cut(s) 113, 245, 382, 451, 734
Bse118I RCCGGY 3 cut(s) 106, 678, 727
Bse1I ACTGG 2 cut(s) 235, 807
Bse8I GATNNNNATC 1 cut(s) 595
BseAI TCCGGA 1 cut(s) 302
BseBI CCWGG 1 cut(s) 344
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 4 cut(s) 119, 430, 529, 831
BseJI GATNNNNATC 1 cut(s) 595
BseLI CCNNNNNNNGG 5 cut(s) 113, 245, 382, 451, 734
BseMII CTCAG 2 cut(s) 94, 889
BseNI ACTGG 2 cut(s) 235, 807
BseSI GKGCMC 1 cut(s) 810
BseXI GCAGC 4 cut(s) 41, 470, 753, 856
BseYI CCCAGC 1 cut(s) 839
Bsh1236I CGCG 2 cut(s) 26, 394
BshFI GGCC 1 cut(s) 412
BshNI GGYRCC 1 cut(s) 805
BshTI ACCGGT 1 cut(s) 106
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 5 cut(s) 113, 245, 382, 451, 734
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 1 cut(s) 412
Bsp119I TTCGAA 1 cut(s) 797
Bsp1286I GDGCHC 1 cut(s) 810
Bsp13I TCCGGA 1 cut(s) 302
Bsp143I GATC 3 cut(s) 221, 235, 323
BspACI CCGC 8 cut(s) 9, 26, 246, 347, 362, 428, 461, 719
BspANI GGCC 1 cut(s) 412
BspCNI CTCAG 2 cut(s) 93, 888
BspEI TCCGGA 1 cut(s) 302
BspFNI CGCG 2 cut(s) 26, 394
BspLI GGNNCC 3 cut(s) 301, 465, 807
BspMAI CTGCAG 1 cut(s) 771
BspPI GGATC 1 cut(s) 230
BspT104I TTCGAA 1 cut(s) 797
BspT107I GGYRCC 1 cut(s) 805
BsrFI RCCGGY 3 cut(s) 106, 678, 727
BsrI ACTGG 2 cut(s) 235, 807
BssAI RCCGGY 3 cut(s) 106, 678, 727
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 3 cut(s) 221, 235, 323
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 4 cut(s) 61, 496, 605, 674
BstBAI YACGTR 2 cut(s) 516, 582
BstBI TTCGAA 1 cut(s) 797
BstC8I GCNNGC 4 cut(s) 24, 34, 410, 729
BstDEI CTNAG 3 cut(s) 80, 535, 875
BstF5I GGATG 4 cut(s) 119, 430, 529, 831
BstFNI CGCG 2 cut(s) 26, 394
BstHHI GCGC 1 cut(s) 874
BstKTI GATC 3 cut(s) 224, 238, 326
BstMBI GATC 3 cut(s) 221, 235, 323
BstMWI GCNNNNNNNGC 1 cut(s) 845
BstNI CCWGG 1 cut(s) 344
BstNSI RCATGY 1 cut(s) 778
BstPAI GACNNNNGTC 1 cut(s) 582
BstSCI CCNGG 5 cut(s) 141, 286, 342, 586, 741
BstSFI CTRYAG 1 cut(s) 767
BstSLI GKGCMC 1 cut(s) 810
BstUI CGCG 2 cut(s) 26, 394
BstV1I GCAGC 4 cut(s) 41, 470, 753, 856
BstX2I RGATCY 3 cut(s) 221, 235, 323
BstYI RGATCY 3 cut(s) 221, 235, 323
BsuRI GGCC 1 cut(s) 412
BtsCI GGATG 4 cut(s) 119, 430, 529, 831
BtsIMutI CAGTG 1 cut(s) 626
Cac8I GCNNGC 4 cut(s) 24, 34, 410, 729
CfoI GCGC 1 cut(s) 874
Cfr10I RCCGGY 3 cut(s) 106, 678, 727
Cfr13I GGNCC 3 cut(s) 109, 204, 373
Csp6I GTAC 3 cut(s) 196, 543, 772
CspAI ACCGGT 1 cut(s) 106
CviAII CATG 5 cut(s) 253, 520, 646, 775, 862
CviQI GTAC 3 cut(s) 196, 543, 772
DdeI CTNAG 3 cut(s) 80, 535, 875
DpnI GATC 3 cut(s) 223, 237, 325
DpnII GATC 3 cut(s) 221, 235, 323
DriI GACNNNNNGTC 1 cut(s) 682
EaeI YGGCCR 1 cut(s) 410
Eam1105I GACNNNNNGTC 1 cut(s) 682
EciI GGCGGA 2 cut(s) 24, 734
Eco47I GGWCC 3 cut(s) 109, 204, 373
Eco57I CTGAAG 3 cut(s) 260, 297, 456
Eco72I CACGTG 2 cut(s) 516, 582
EcoRII CCWGG 1 cut(s) 342
FaeI CATG 5 cut(s) 256, 523, 649, 778, 865
FaiI YATR 9 cut(s) 254, 366, 382, 521, 596, 639, 647, 776, 863
FaqI GGGAC 1 cut(s) 125
FatI CATG 5 cut(s) 252, 519, 645, 774, 861
FauI CCCGC 1 cut(s) 369
Fnu4HI GCNGC 6 cut(s) 27, 30, 459, 462, 767, 870
FokI GGATG 4 cut(s) 106, 437, 536, 838
Fsp4HI GCNGC 6 cut(s) 27, 30, 459, 462, 767, 870
FspBI CTAG 1 cut(s) 857
GlaI GCGC 1 cut(s) 873
GluI GCNGC 6 cut(s) 27, 30, 459, 462, 767, 870
GsaI CCCAGC 1 cut(s) 843
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 1 cut(s) 412
HhaI GCGC 1 cut(s) 874
Hin1II CATG 5 cut(s) 256, 523, 649, 778, 865
Hin6I GCGC 1 cut(s) 872
HinP1I GCGC 1 cut(s) 872
HindIII AAGCTT 1 cut(s) 160
HinfI GANTC 3 cut(s) 84, 257, 482
HphI GGTGA 7 cut(s) 143, 397, 502, 637, 661, 706, 772
Hpy166II GTNNAC 2 cut(s) 388, 628
Hpy188I TCNGA 6 cut(s) 83, 116, 174, 204, 601, 783
Hpy188III TCNNGA 3 cut(s) 303, 371, 712
Hpy8I GTNNAC 2 cut(s) 388, 628
HpyAV CCTTC 4 cut(s) 568, 709, 778, 859
HpyCH4III ACNGT 4 cut(s) 61, 496, 605, 674
HpyCH4IV ACGT 2 cut(s) 515, 581
HpyCH4V TGCA 3 cut(s) 519, 769, 829
HpyF10VI GCNNNNNNNGC 1 cut(s) 845
HpyF3I CTNAG 3 cut(s) 80, 535, 875
HpySE526I ACGT 2 cut(s) 515, 581
Hsp92II CATG 5 cut(s) 256, 523, 649, 778, 865
HspAI GCGC 1 cut(s) 872
Kpn2I TCCGGA 1 cut(s) 302
KroI GCCGGC 1 cut(s) 727
KroNI GCCGGC 1 cut(s) 729
Kzo9I GATC 3 cut(s) 221, 235, 323
LmnI GCTCC 3 cut(s) 116, 305, 469
Lsp1109I GCAGC 4 cut(s) 41, 470, 753, 856
LweI GCATC 3 cut(s) 128, 415, 816
MaeI CTAG 1 cut(s) 857
MaeII ACGT 2 cut(s) 515, 581
MaeIII GTNAC 4 cut(s) 490, 505, 674, 709
MalI GATC 3 cut(s) 223, 237, 325
MboI GATC 3 cut(s) 221, 235, 323
MboII GAAGA 2 cut(s) 163, 216
MflI RGATCY 3 cut(s) 221, 235, 323
MhlI GDGCHC 1 cut(s) 810
MluCI AATT 1 cut(s) 664
MlyI GAGTC 2 cut(s) 251, 491
MroI TCCGGA 1 cut(s) 302
MroNI GCCGGC 1 cut(s) 727
MseI TTAA 4 cut(s) 66, 186, 609, 889
MslI CAYNNNNRTG 1 cut(s) 518
MspA1I CMGCKG 3 cut(s) 32, 280, 461
MspR9I CCNGG 5 cut(s) 143, 288, 344, 588, 743
MvaI CCWGG 1 cut(s) 344
MvnI CGCG 2 cut(s) 26, 394
MwoI GCNNNNNNNGC 1 cut(s) 845
NaeI GCCGGC 1 cut(s) 729
NciI CCSGG 4 cut(s) 143, 288, 588, 743
NdeII GATC 3 cut(s) 221, 235, 323
NgoMIV GCCGGC 1 cut(s) 727
NlaIII CATG 5 cut(s) 256, 523, 649, 778, 865
NlaIV GGNNCC 3 cut(s) 301, 465, 807
NmuCI GTSAC 4 cut(s) 490, 505, 674, 709
NspI RCATGY 1 cut(s) 778
NspV TTCGAA 1 cut(s) 797
PciI ACATGT 1 cut(s) 774
PdiI GCCGGC 1 cut(s) 729
PfeI GAWTC 1 cut(s) 84
PfoI TCCNGGA 2 cut(s) 141, 586
PinAI ACCGGT 1 cut(s) 106
PkrI GCNGC 6 cut(s) 28, 31, 460, 463, 768, 871
PleI GAGTC 2 cut(s) 251, 490
PmaCI CACGTG 2 cut(s) 516, 582
PmlI CACGTG 2 cut(s) 516, 582
PpsI GAGTC 2 cut(s) 251, 490
Ppu21I YACGTR 2 cut(s) 516, 582
PscI ACATGT 1 cut(s) 774
PshAI GACNNNNGTC 1 cut(s) 582
PsiI TTATAA 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 342
PspCI CACGTG 2 cut(s) 516, 582
PspFI CCCAGC 1 cut(s) 839
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 3 cut(s) 301, 465, 807
PspPI GGNCC 3 cut(s) 109, 204, 373
PstI CTGCAG 1 cut(s) 771
PsuI RGATCY 3 cut(s) 221, 235, 323
PvuII CAGCTG 2 cut(s) 32, 280
RsaI GTAC 3 cut(s) 197, 544, 773
RsaNI GTAC 3 cut(s) 196, 543, 772
RseI CAYNNNNRTG 1 cut(s) 518
SaqAI TTAA 4 cut(s) 66, 186, 609, 889
SatI GCNGC 6 cut(s) 27, 30, 459, 462, 767, 870
Sau3AI GATC 3 cut(s) 221, 235, 323
Sau96I GGNCC 3 cut(s) 109, 204, 373
SchI GAGTC 2 cut(s) 251, 491
ScrFI CCNGG 5 cut(s) 143, 288, 344, 588, 743
SduI GDGCHC 1 cut(s) 810
SfaNI GCATC 3 cut(s) 128, 415, 816
SfcI CTRYAG 1 cut(s) 767
SfuI TTCGAA 1 cut(s) 797
SinI GGWCC 3 cut(s) 109, 204, 373
SmiMI CAYNNNNRTG 1 cut(s) 518
Sse9I AATT 1 cut(s) 664
SsiI CCGC 8 cut(s) 9, 26, 246, 347, 362, 428, 461, 719
SspMI CTAG 1 cut(s) 857
StyD4I CCNGG 5 cut(s) 141, 286, 342, 586, 741
TaaI ACNGT 4 cut(s) 61, 496, 605, 674
TaiI ACGT 2 cut(s) 518, 584
TaqI TCGA 3 cut(s) 260, 529, 797
TasI AATT 1 cut(s) 664
TatI WGTACW 2 cut(s) 195, 771
TauI GCSGC 2 cut(s) 29, 464
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 4 cut(s) 66, 186, 609, 889
Tru9I TTAA 4 cut(s) 66, 186, 609, 889
TscAI CASTG 1 cut(s) 626
TseFI GTSAC 4 cut(s) 490, 505, 674, 709
TseI GCWGC 4 cut(s) 29, 458, 766, 869
Tsp45I GTSAC 4 cut(s) 490, 505, 674, 709
TspDTI ATGAA 1 cut(s) 878
TspGWI ACGGA 3 cut(s) 77, 437, 560
TspRI CASTG 1 cut(s) 626
VpaK11BI GGWCC 3 cut(s) 109, 204, 373
XceI RCATGY 1 cut(s) 778
XspI CTAG 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.