Rh2BG041900

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001258
Physical Location & Seq
Reverse (-)
2900820 .. 2901638
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG041900.1

Sequence Viewer

Length: 819 bp
ATGCTCAAATACCGGCCGATCGCGCCGAAACTGTTCGCCGGAGGCACATCTTCGAATAAGCCGTTCAAGAGAACCAAGAGAAAGTACGTTAGGGCGGTCCACAAATATAGAGAGAAACAAAATGGGAAACAAGAAATTACGGATGAACAGGCCGTGGAGACACTGCTGCTGTTGCCTCACATGGTAGAGAAGAGTGGTAACAGTGGTACCGATCGCTCCAAACACAGTGGCGGATCTAGCTTTGAGGTTGATGCTAGGGTCGTTGAAGATAACAATCATTGGTTGAGCTTGAGTGGAGCCGGAGATCCGACCCCGGCGCCGGTGGGGAAGAAGCAGGTTGTTGAGAGTTTGTCAGATCCATCCGTGGTGATGGATCGGATGGGAGGAGTGGAGTCGTGGGTGACAGTGGAGTGCGTGCGAGGCACATGCATGACGGCTCCGAGTTCTTGTCAAGGGTTTGGTTTTTCCGGGGTCAGTGCGGACGAGGAGAGAACGAGCAGATTGGAGAGCGACGCATGTCCGGGGTTCATATCGGACGGTTGGAACAGAGTGCAGTGGCTGAACGGAGCATTTAGGAGGATGGTGATGATGACGAGGCAGCCGCAACCGTTAACGGTGTGGTTATGCACGAATGAGGAGCTGTCGCACACGACGAACTCGGCGTTCACGTGCCAAGTAAAACTGAAATACACGGTGGTGGACGATCAGAAAAAGGACAAGAACTACTACTCGCGGTTGGTGCCTTGTGATTTGTGGAGGATGGACGGCGGAGGATTTGCATGGCGGCTCGACGTTAAATATTCCCTCGCTCTCGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.37

Weight (kDa)

8.9

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 130 - 269 4.4e-42 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 325
Acc65I GGTACC 1 cut(s) 206
AccB1I GGYRCC 3 cut(s) 206, 316, 739
AccII CGCG 2 cut(s) 23, 733
AciI CCGC 7 cut(s) 95, 231, 479, 602, 733, 768, 784
AclWI GGATC 4 cut(s) 241, 299, 350, 381
AcoI YGGCCR 1 cut(s) 14
AcvI CACGTG 1 cut(s) 669
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 2 cut(s) 86, 208
AfiI CCNNNNNNNGG 1 cut(s) 319
AgsI TTSAA 2 cut(s) 67, 266
AleI CACNNNNGTG 1 cut(s) 695
AluBI AGCT 3 cut(s) 240, 288, 640
AluI AGCT 3 cut(s) 240, 288, 640
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 4 cut(s) 241, 299, 350, 381
AlwNI CAGNNNCTG 1 cut(s) 559
AoxI GGCC 2 cut(s) 14, 150
ApeKI GCWGC 2 cut(s) 166, 598
Asp700I GAANNNNTTC 1 cut(s) 32
Asp718I GGTACC 1 cut(s) 206
AspLEI GCGC 2 cut(s) 25, 319
AspS9I GGNCC 1 cut(s) 97
AsuC2I CCSGG 3 cut(s) 314, 469, 522
AsuHPI GGTGA 3 cut(s) 379, 412, 595
AsuII TTCGAA 1 cut(s) 53
AvaII GGWCC 1 cut(s) 97
BaeI ACNNNNGTAYC 2 cut(s) 190, 223
BanI GGYRCC 3 cut(s) 206, 316, 739
BbrPI CACGTG 1 cut(s) 669
BbvI GCAGC 2 cut(s) 153, 610
BccI CCATC 5 cut(s) 364, 367, 373, 574, 754
BceAI ACGGC 4 cut(s) 46, 137, 450, 781
BcgI CGANNNNNNTGC 2 cut(s) 408, 442
BcnI CCSGG 3 cut(s) 314, 469, 522
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 2 cut(s) 237, 255
BfoI RGCGCY 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 325
BisI GCNGC 4 cut(s) 167, 599, 602, 785
BlsI GCNGC 4 cut(s) 168, 600, 603, 786
Bme1390I CCNGG 3 cut(s) 314, 469, 522
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 5 cut(s) 208, 298, 318, 438, 741
BmrFI CCNGG 3 cut(s) 314, 469, 522
BmsI GCATC 1 cut(s) 241
BoxI GACNNNNGTC 1 cut(s) 516
Bpu14I TTCGAA 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 310
BpuMI CCSGG 3 cut(s) 314, 469, 522
BsaAI YACGTR 1 cut(s) 669
BsaBI GATNNNNATC 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 317
BsaJI CCNNGG 5 cut(s) 153, 312, 363, 468, 521
Bsc4I CCNNNNNNNGG 1 cut(s) 319
Bse118I RCCGGY 2 cut(s) 12, 319
Bse8I GATNNNNATC 1 cut(s) 273
BseDI CCNNGG 5 cut(s) 153, 312, 363, 468, 521
BseGI GGATG 5 cut(s) 148, 359, 384, 585, 765
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 319
BseRI GAGGAG 3 cut(s) 399, 500, 650
BseX3I CGGCCG 1 cut(s) 14
BseXI GCAGC 2 cut(s) 153, 610
BsgI GTGCAG 1 cut(s) 572
Bsh1236I CGCG 2 cut(s) 23, 733
Bsh1285I CGRYCG 3 cut(s) 17, 21, 214
BshFI GGCC 2 cut(s) 16, 152
BshNI GGYRCC 3 cut(s) 206, 316, 739
BsiEI CGRYCG 3 cut(s) 17, 21, 214
BsiSI CCGG 7 cut(s) 13, 39, 300, 314, 320, 468, 521
BslI CCNNNNNNNGG 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 152
BsnI GGCC 2 cut(s) 16, 152
Bsp119I TTCGAA 1 cut(s) 53
Bsp143I GATC 7 cut(s) 18, 211, 233, 304, 355, 373, 703
BspACI CCGC 7 cut(s) 95, 231, 479, 602, 733, 768, 784
BspANI GGCC 2 cut(s) 16, 152
BspFNI CGCG 2 cut(s) 23, 733
BspLI GGNNCC 5 cut(s) 208, 298, 318, 438, 741
BspMI ACCTGC 1 cut(s) 325
BspPI GGATC 4 cut(s) 241, 299, 350, 381
BspT104I TTCGAA 1 cut(s) 53
BspT107I GGYRCC 3 cut(s) 206, 316, 739
BsrFI RCCGGY 2 cut(s) 12, 319
BssAI RCCGGY 2 cut(s) 12, 319
BssECI CCNNGG 5 cut(s) 153, 312, 363, 468, 521
BssMI GATC 7 cut(s) 18, 211, 233, 304, 355, 373, 703
BssNI GRCGYC 1 cut(s) 317
Bst4CI ACNGT 8 cut(s) 33, 203, 227, 406, 539, 609, 616, 694
Bst6I CTCTTC 1 cut(s) 185
BstACI GRCGYC 1 cut(s) 317
BstBAI YACGTR 1 cut(s) 669
BstBI TTCGAA 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 416
BstDSI CCRYGG 2 cut(s) 153, 363
BstF5I GGATG 5 cut(s) 148, 359, 384, 585, 765
BstFNI CGCG 2 cut(s) 23, 733
BstH2I RGCGCY 1 cut(s) 320
BstHHI GCGC 2 cut(s) 25, 319
BstKTI GATC 7 cut(s) 21, 214, 236, 307, 358, 376, 706
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 7 cut(s) 18, 211, 233, 304, 355, 373, 703
BstMCI CGRYCG 3 cut(s) 17, 21, 214
BstMWI GCNNNNNNNGC 5 cut(s) 22, 172, 237, 420, 739
BstNSI RCATGY 2 cut(s) 429, 519
BstPAI GACNNNNGTC 1 cut(s) 516
BstSCI CCNGG 3 cut(s) 312, 467, 520
BstUI CGCG 2 cut(s) 23, 733
BstV1I GCAGC 2 cut(s) 153, 610
BstX2I RGATCY 3 cut(s) 233, 304, 355
BstYI RGATCY 3 cut(s) 233, 304, 355
BstZI CGGCCG 1 cut(s) 14
BsuRI GGCC 2 cut(s) 16, 152
BtgI CCRYGG 2 cut(s) 153, 363
BtsCI GGATG 5 cut(s) 148, 359, 384, 585, 765
BtsI GCAGTG 2 cut(s) 161, 560
BtsIMutI CAGTG 6 cut(s) 161, 208, 232, 411, 481, 560
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 416
CaiI CAGNNNCTG 1 cut(s) 559
CfoI GCGC 2 cut(s) 25, 319
Cfr10I RCCGGY 2 cut(s) 12, 319
Cfr13I GGNCC 1 cut(s) 97
CseI GACGC 1 cut(s) 521
Csp6I GTAC 2 cut(s) 85, 207
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
CviAII CATG 5 cut(s) 181, 426, 430, 516, 780
CviQI GTAC 2 cut(s) 85, 207
DinI GGCGCC 1 cut(s) 318
DpnI GATC 7 cut(s) 20, 213, 235, 306, 357, 375, 705
DpnII GATC 7 cut(s) 18, 211, 233, 304, 355, 373, 703
EaeI YGGCCR 1 cut(s) 14
EagI CGGCCG 1 cut(s) 14
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
EciI GGCGGA 2 cut(s) 246, 783
EclXI CGGCCG 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 97
Eco52I CGGCCG 1 cut(s) 14
Eco72I CACGTG 1 cut(s) 669
EcoT22I ATGCAT 1 cut(s) 431
EgeI GGCGCC 1 cut(s) 318
EheI GGCGCC 1 cut(s) 318
FaeI CATG 5 cut(s) 184, 429, 433, 519, 783
FaiI YATR 8 cut(s) 108, 182, 427, 431, 517, 530, 625, 781
FatI CATG 5 cut(s) 180, 425, 429, 515, 779
Fnu4HI GCNGC 4 cut(s) 167, 599, 602, 785
FokI GGATG 5 cut(s) 155, 346, 391, 592, 772
Fsp4HI GCNGC 4 cut(s) 167, 599, 602, 785
FspBI CTAG 2 cut(s) 237, 255
GlaI GCGC 2 cut(s) 24, 318
GluI GCNGC 4 cut(s) 167, 599, 602, 785
HaeII RGCGCY 1 cut(s) 320
HaeIII GGCC 2 cut(s) 16, 152
HapII CCGG 7 cut(s) 13, 39, 300, 314, 320, 468, 521
HgaI GACGC 1 cut(s) 521
HhaI GCGC 2 cut(s) 25, 319
Hin1I GRCGYC 1 cut(s) 317
Hin1II CATG 5 cut(s) 184, 429, 433, 519, 783
Hin6I GCGC 2 cut(s) 23, 317
HinP1I GCGC 2 cut(s) 23, 317
HincII GTYRAC 1 cut(s) 612
HindII GTYRAC 1 cut(s) 612
HinfI GANTC 1 cut(s) 392
HpaI GTTAAC 1 cut(s) 612
HpaII CCGG 7 cut(s) 13, 39, 300, 314, 320, 468, 521
HphI GGTGA 3 cut(s) 379, 412, 595
Hpy166II GTNNAC 4 cut(s) 100, 612, 666, 700
Hpy188I TCNGA 6 cut(s) 309, 355, 378, 441, 535, 708
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 4 cut(s) 100, 612, 666, 700
Hpy99I CGWCG 3 cut(s) 515, 655, 794
HpyCH4III ACNGT 8 cut(s) 33, 203, 227, 406, 539, 609, 616, 694
HpyCH4IV ACGT 3 cut(s) 87, 668, 792
HpyCH4V TGCA 4 cut(s) 429, 553, 627, 779
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 172, 237, 420, 739
HpySE526I ACGT 3 cut(s) 87, 668, 792
Hsp92I GRCGYC 1 cut(s) 317
Hsp92II CATG 5 cut(s) 184, 429, 433, 519, 783
HspAI GCGC 2 cut(s) 23, 317
KasI GGCGCC 1 cut(s) 316
KpnI GGTACC 1 cut(s) 210
KspAI GTTAAC 1 cut(s) 612
Kzo9I GATC 7 cut(s) 18, 211, 233, 304, 355, 373, 703
LmnI GCTCC 5 cut(s) 221, 296, 442, 566, 637
LpnPI CCDG 9 cut(s) 26, 52, 134, 313, 320, 327, 333, 481, 534
Lsp1109I GCAGC 2 cut(s) 153, 610
LweI GCATC 1 cut(s) 241
MaeI CTAG 2 cut(s) 237, 255
MaeII ACGT 3 cut(s) 87, 668, 792
MaeIII GTNAC 2 cut(s) 197, 400
MalI GATC 7 cut(s) 20, 213, 235, 306, 357, 375, 705
MboI GATC 7 cut(s) 18, 211, 233, 304, 355, 373, 703
MboII GAAGA 4 cut(s) 42, 202, 278, 340
MflI RGATCY 3 cut(s) 233, 304, 355
MluCI AATT 1 cut(s) 135
Mly113I GGCGCC 1 cut(s) 317
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 2 cut(s) 332, 521
Mph1103I ATGCAT 1 cut(s) 431
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 2 cut(s) 611, 795
MslI CAYNNNNRTG 2 cut(s) 428, 695
MspI CCGG 7 cut(s) 13, 39, 300, 314, 320, 468, 521
MspR9I CCNGG 3 cut(s) 314, 469, 522
MvnI CGCG 2 cut(s) 23, 733
MwoI GCNNNNNNNGC 5 cut(s) 22, 172, 237, 420, 739
NarI GGCGCC 1 cut(s) 317
NciI CCSGG 3 cut(s) 314, 469, 522
NdeII GATC 7 cut(s) 18, 211, 233, 304, 355, 373, 703
NlaIII CATG 5 cut(s) 184, 429, 433, 519, 783
NlaIV GGNNCC 5 cut(s) 208, 298, 318, 438, 741
NmeAIII GCCGAG 2 cut(s) 638, 792
NmuCI GTSAC 1 cut(s) 400
NsiI ATGCAT 1 cut(s) 431
NspI RCATGY 2 cut(s) 429, 519
NspV TTCGAA 1 cut(s) 53
OliI CACNNNNGTG 1 cut(s) 695
PcsI WCGNNNNNNNCGW 4 cut(s) 59, 650, 659, 665
PdmI GAANNNNTTC 1 cut(s) 32
PkrI GCNGC 4 cut(s) 168, 600, 603, 786
Ple19I CGATCG 2 cut(s) 21, 214
PleI GAGTC 1 cut(s) 400
PluTI GGCGCC 1 cut(s) 320
PmaCI CACGTG 1 cut(s) 669
PmlI CACGTG 1 cut(s) 669
PpsI GAGTC 1 cut(s) 400
Ppu21I YACGTR 1 cut(s) 669
PshAI GACNNNNGTC 1 cut(s) 516
PspCI CACGTG 1 cut(s) 669
PspN4I GGNNCC 5 cut(s) 208, 298, 318, 438, 741
PspPI GGNCC 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 559
PsuI RGATCY 3 cut(s) 233, 304, 355
PvuI CGATCG 2 cut(s) 21, 214
RsaI GTAC 2 cut(s) 86, 208
RsaNI GTAC 2 cut(s) 85, 207
RseI CAYNNNNRTG 2 cut(s) 428, 695
SaqAI TTAA 2 cut(s) 611, 795
SatI GCNGC 4 cut(s) 167, 599, 602, 785
Sau3AI GATC 7 cut(s) 18, 211, 233, 304, 355, 373, 703
Sau96I GGNCC 1 cut(s) 97
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 3 cut(s) 314, 469, 522
SetI ASST 8 cut(s) 90, 242, 249, 290, 339, 642, 671, 795
SfaNI GCATC 1 cut(s) 241
SfoI GGCGCC 1 cut(s) 318
SfuI TTCGAA 1 cut(s) 53
SgrAI CRCCGGYG 1 cut(s) 319
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 2 cut(s) 428, 695
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
Sse9I AATT 1 cut(s) 135
SsiI CCGC 7 cut(s) 95, 231, 479, 602, 733, 768, 784
SspDI GGCGCC 1 cut(s) 316
SspI AATATT 1 cut(s) 800
SspMI CTAG 2 cut(s) 237, 255
StyD4I CCNGG 3 cut(s) 312, 467, 520
TaaI ACNGT 8 cut(s) 33, 203, 227, 406, 539, 609, 616, 694
TaiI ACGT 3 cut(s) 90, 671, 795
TaqI TCGA 2 cut(s) 53, 789
TasI AATT 1 cut(s) 135
TauI GCSGC 2 cut(s) 604, 787
Tru1I TTAA 2 cut(s) 611, 795
Tru9I TTAA 2 cut(s) 611, 795
TscAI CASTG 6 cut(s) 168, 208, 232, 411, 481, 560
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 2 cut(s) 166, 598
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 2 cut(s) 159, 517
TspGWI ACGGA 3 cut(s) 155, 352, 579
TspRI CASTG 6 cut(s) 168, 208, 232, 411, 481, 560
VpaK11BI GGWCC 1 cut(s) 97
XceI RCATGY 2 cut(s) 429, 519
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 2 cut(s) 237, 255
Zsp2I ATGCAT 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.