MD09G1015700.v1.1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0001258
Physical Location & Seq
Forward (+)
968405 .. 970199
1795 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1015700.v1.1.491

Sequence Viewer

Length: 1065 bp
ATGGGTAGTCACAACTGCTGGAGTGGTGCCCTAGACACGTGGTGGTTCCTCACCCAGCCACCACGCTCCTGCTATGATTATCGCTTCTGTCCTCCGGAGACGAGAGAGAGAGAGAGAGATAGAGAGAGAAAGGAAAGAGAGACAGACAGACAGAGATCAGGCATCCGAGGGAGAGAGGAGGGGAACATCGTACGAGGAGAGTGGATGGACGCGGGAGATGGATGGCGCGTGGCAGGCGGTGAGACTGGTGCTCCGGATAAGACGATAATCAACCAGATAATGCTCAGATTCCGGCCGATCGCTCCGAAACCGGCGGCTGGCGGCTCTTCCTCCGGTCCGACTTCGGCGGATGGTAAAACCGTCCTTTCTGCAAGCAAGAGAGTAAAGAGGAAGTACATTAGGGTCGCGAAGGACCCTAAGAATAATAACAGCGCAAGAAAATTAATCAACAGTAGATCTTCCACAGATGATAATCCGCCGGATGTCGTCACTCTTCCACTGATGCCGGAAAAAACAGACTCTCTAGGTTTTTCAGGTAGTGGATCTTGGGGTAACAGGGAGATTCCTACGTGGAAGAACCTAAACCATAAGATGAACAGGTCCGTCTGGAAGGAGGACAGCCGGTCCAGGATAGATCGTGCGGCGGTGGTGCCTCGTGTGACGACGGTGGAGTCGTGGGTGACGGTGGAAAGCGTGACAGACACGTGCATGGAAGTACGAGGGTTAGGGTATACGGACATGGAGAAAATGAAGAGTTTGGATAAAGACACGTGTCCGGGGTTTATATCGGACGGTTCTAACAAAGTGCAGTGGGTGAACGAGGCGTACAAGAGGATGGTGAGCTATGTAGAGGGGCAGTTGCCGCCGGCGGAGGTTGTGGTGTGGCTGGATACGAAGGAGAGCCTGCCGTATGCTCACCCGATGTTCAGTTGCCGGGTGAGGCTCCAGTACTCCACGTTGCAGAAGGAGAAGTGCTCGAAGACGGTGCCGTGCGATGTGTGGAGGATGGAGTGTGGGTTGGCTTGGAGGCTGGATATCACGGCGGCGCTTAGTTTGGGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

40.02

Weight (kDa)

9.14

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 223 - 351 9e-58 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 670
AccB1I GGYRCC 3 cut(s) 26, 649, 985
AccI GTMKAC 1 cut(s) 731
AccII CGCG 3 cut(s) 212, 228, 407
AccIII TCCGGA 2 cut(s) 94, 253
AclWI GGATC 1 cut(s) 550
AcoI YGGCCR 1 cut(s) 293
AcvI CACGTG 3 cut(s) 39, 705, 771
AdeI CACNNNGTG 1 cut(s) 42
AfaI GTAC 5 cut(s) 192, 395, 717, 827, 950
AfiI CCNNNNNNNGG 1 cut(s) 317
AflIII ACRYGT 4 cut(s) 36, 702, 768, 770
AhdI GACNNNNNGTC 1 cut(s) 622
AjnI CCWGG 1 cut(s) 626
AluBI AGCT 1 cut(s) 843
AluI AGCT 1 cut(s) 843
Alw21I GWGCWC 2 cut(s) 253, 977
Alw26I GTCTC 3 cut(s) 92, 134, 236
AlwI GGATC 1 cut(s) 550
Aor13HI TCCGGA 2 cut(s) 94, 253
AoxI GGCC 1 cut(s) 293
AseI ATTAAT 1 cut(s) 443
AspLEI GCGC 3 cut(s) 228, 434, 1048
AspS9I GGNCC 4 cut(s) 335, 412, 600, 624
AsuC2I CCSGG 2 cut(s) 777, 935
AsuHPI GGTGA 7 cut(s) 43, 251, 691, 826, 850, 908, 949
AvaII GGWCC 4 cut(s) 335, 412, 600, 624
BaeGI GKGCMC 1 cut(s) 31
BanI GGYRCC 3 cut(s) 26, 649, 985
BauI CACGAG 1 cut(s) 654
BbrPI CACGTG 3 cut(s) 39, 705, 771
BbsI GAAGAC 1 cut(s) 986
Bbv12I GWGCWC 2 cut(s) 253, 977
BccI CCATC 6 cut(s) 199, 212, 216, 344, 829, 1000
BceAI ACGGC 3 cut(s) 892, 973, 1056
BcgI CGANNNNNNTGC 2 cut(s) 967, 1001
BciT130I CCWGG 1 cut(s) 628
BciVI GTATCC 1 cut(s) 883
BcnI CCSGG 2 cut(s) 777, 935
BcoDI GTCTC 3 cut(s) 92, 134, 236
BfaI CTAG 2 cut(s) 32, 524
BfoI RGCGCY 1 cut(s) 1049
BfuI GTATCC 1 cut(s) 883
BglII AGATCT 1 cut(s) 455
BisI GCNGC 5 cut(s) 315, 322, 642, 863, 1044
BlsI GCNGC 5 cut(s) 316, 323, 643, 864, 1045
BmcAI AGTACT 1 cut(s) 950
Bme1390I CCNGG 3 cut(s) 628, 777, 935
Bme18I GGWCC 4 cut(s) 335, 412, 600, 624
BmeRI GACNNNNNGTC 1 cut(s) 622
BmgT120I GGNCC 4 cut(s) 335, 412, 600, 624
BmiI GGNNCC 6 cut(s) 28, 47, 414, 651, 944, 987
BmrFI CCNGG 3 cut(s) 628, 777, 935
BmsI GCATC 2 cut(s) 171, 492
BoxI GACNNNNGTC 1 cut(s) 771
BpiI GAAGAC 1 cut(s) 986
BplI GAGNNNNNCTC 2 cut(s) 959, 991
BpmI CTGGAG 2 cut(s) 40, 929
BpuMI CCSGG 2 cut(s) 777, 935
BsaAI YACGTR 4 cut(s) 39, 570, 705, 771
BsaBI GATNNNNATC 1 cut(s) 471
BsaJI CCNNGG 2 cut(s) 166, 776
BsaWI WCCGGW 3 cut(s) 94, 253, 332
BsaXI ACNNNNNCTCC 4 cut(s) 235, 265, 1001, 1031
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse118I RCCGGY 3 cut(s) 310, 621, 865
Bse1I ACTGG 2 cut(s) 250, 946
Bse8I GATNNNNATC 1 cut(s) 471
BseAI TCCGGA 2 cut(s) 94, 253
BseBI CCWGG 1 cut(s) 628
BseDI CCNNGG 2 cut(s) 166, 776
BseGI GGATG 7 cut(s) 162, 210, 227, 355, 487, 840, 1011
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMII CTCAG 1 cut(s) 298
BseNI ACTGG 2 cut(s) 250, 946
BseRI GAGGAG 2 cut(s) 191, 210
BseSI GKGCMC 1 cut(s) 31
BseX3I CGGCCG 1 cut(s) 293
BseYI CCCAGC 1 cut(s) 54
BsgI GTGCAG 1 cut(s) 827
Bsh1236I CGCG 3 cut(s) 212, 228, 407
Bsh1285I CGRYCG 2 cut(s) 296, 300
BshFI GGCC 1 cut(s) 295
BshNI GGYRCC 3 cut(s) 26, 649, 985
BsiEI CGRYCG 2 cut(s) 296, 300
BsiHKAI GWGCWC 2 cut(s) 253, 977
BsiWI CGTACG 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 3 cut(s) 92, 134, 236
BsmBI CGTCTC 1 cut(s) 92
BsnI GGCC 1 cut(s) 295
Bsp1286I GDGCHC 3 cut(s) 31, 253, 977
Bsp13I TCCGGA 2 cut(s) 94, 253
Bsp143I GATC 5 cut(s) 155, 297, 455, 542, 634
Bsp68I TCGCGA 1 cut(s) 407
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 1 cut(s) 297
BspEI TCCGGA 2 cut(s) 94, 253
BspFNI CGCG 3 cut(s) 212, 228, 407
BspLI GGNNCC 6 cut(s) 28, 47, 414, 651, 944, 987
BspPI GGATC 1 cut(s) 550
BspQI GCTCTTC 1 cut(s) 331
BspT107I GGYRCC 3 cut(s) 26, 649, 985
BsrFI RCCGGY 3 cut(s) 310, 621, 865
BsrI ACTGG 2 cut(s) 250, 946
BssAI RCCGGY 3 cut(s) 310, 621, 865
BssECI CCNNGG 2 cut(s) 166, 776
BssMI GATC 5 cut(s) 155, 297, 455, 542, 634
BssNAI GTATAC 1 cut(s) 732
BssSI CACGAG 1 cut(s) 654
Bst1107I GTATAC 1 cut(s) 732
Bst2BI CACGAG 1 cut(s) 654
Bst2UI CCWGG 1 cut(s) 628
Bst4CI ACNGT 6 cut(s) 361, 452, 667, 685, 794, 985
Bst6I CTCTTC 3 cut(s) 331, 498, 746
BstBAI YACGTR 4 cut(s) 39, 570, 705, 771
BstC8I GCNNGC 5 cut(s) 235, 319, 373, 867, 905
BstDEI CTNAG 3 cut(s) 284, 417, 1049
BstF5I GGATG 7 cut(s) 162, 210, 227, 355, 487, 840, 1011
BstFNI CGCG 3 cut(s) 212, 228, 407
BstH2I RGCGCY 1 cut(s) 1049
BstHHI GCGC 3 cut(s) 228, 434, 1048
BstKTI GATC 5 cut(s) 158, 300, 458, 545, 637
BstMAI GTCTC 3 cut(s) 92, 134, 236
BstMBI GATC 5 cut(s) 155, 297, 455, 542, 634
BstMCI CGRYCG 2 cut(s) 296, 300
BstMWI GCNNNNNNNGC 2 cut(s) 234, 862
BstNI CCWGG 1 cut(s) 628
BstPAI GACNNNNGTC 1 cut(s) 771
BstSCI CCNGG 3 cut(s) 626, 775, 933
BstSLI GKGCMC 1 cut(s) 31
BstUI CGCG 3 cut(s) 212, 228, 407
BstV2I GAAGAC 1 cut(s) 986
BstX2I RGATCY 2 cut(s) 455, 542
BstYI RGATCY 2 cut(s) 455, 542
BstZ17I GTATAC 1 cut(s) 732
BstZI CGGCCG 1 cut(s) 293
BsuI GTATCC 1 cut(s) 883
BsuRI GGCC 1 cut(s) 295
BtgZI GCGATG 1 cut(s) 1008
BtsCI GGATG 7 cut(s) 162, 210, 227, 355, 487, 840, 1011
BtsI GCAGTG 1 cut(s) 815
BtsIMutI CAGTG 2 cut(s) 497, 815
BtuMI TCGCGA 1 cut(s) 407
Cac8I GCNNGC 5 cut(s) 235, 319, 373, 867, 905
CfoI GCGC 3 cut(s) 228, 434, 1048
Cfr10I RCCGGY 3 cut(s) 310, 621, 865
Cfr13I GGNCC 4 cut(s) 335, 412, 600, 624
CpoI CGGWCCG 1 cut(s) 335
CseI GACGC 1 cut(s) 218
Csp6I GTAC 5 cut(s) 191, 394, 716, 826, 949
CspI CGGWCCG 1 cut(s) 335
CviAII CATG 2 cut(s) 709, 739
CviQI GTAC 5 cut(s) 191, 394, 716, 826, 949
DdeI CTNAG 3 cut(s) 284, 417, 1049
DpnI GATC 5 cut(s) 157, 299, 457, 544, 636
DpnII GATC 5 cut(s) 155, 297, 455, 542, 634
DraIII CACNNNGTG 1 cut(s) 42
DrdI GACNNNNNNGTC 1 cut(s) 670
DriI GACNNNNNGTC 1 cut(s) 622
DseDI GACNNNNNNGTC 1 cut(s) 670
EaeI YGGCCR 1 cut(s) 293
EagI CGGCCG 1 cut(s) 293
Eam1104I CTCTTC 3 cut(s) 331, 498, 746
Eam1105I GACNNNNNGTC 1 cut(s) 622
EarI CTCTTC 3 cut(s) 331, 498, 746
EciI GGCGGA 3 cut(s) 362, 465, 884
EclXI CGGCCG 1 cut(s) 293
Eco32I GATATC 1 cut(s) 1036
Eco47I GGWCC 4 cut(s) 335, 412, 600, 624
Eco52I CGGCCG 1 cut(s) 293
Eco72I CACGTG 3 cut(s) 39, 705, 771
EcoO109I RGGNCCY 1 cut(s) 412
EcoRII CCWGG 1 cut(s) 626
EcoRV GATATC 1 cut(s) 1036
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 2 cut(s) 712, 742
FaiI YATR 8 cut(s) 75, 588, 710, 732, 740, 785, 846, 912
FatI CATG 2 cut(s) 708, 738
FauI CCCGC 1 cut(s) 205
FblI GTMKAC 1 cut(s) 731
Fnu4HI GCNGC 5 cut(s) 315, 322, 642, 863, 1044
FokI GGATG 7 cut(s) 149, 217, 234, 362, 494, 847, 1018
Fsp4HI GCNGC 5 cut(s) 315, 322, 642, 863, 1044
FspBI CTAG 2 cut(s) 32, 524
GlaI GCGC 3 cut(s) 227, 433, 1047
GluI GCNGC 5 cut(s) 315, 322, 642, 863, 1044
GsaI CCCAGC 1 cut(s) 58
GsuI CTGGAG 2 cut(s) 40, 929
HaeII RGCGCY 1 cut(s) 1049
HaeIII GGCC 1 cut(s) 295
HgaI GACGC 1 cut(s) 218
HhaI GCGC 3 cut(s) 228, 434, 1048
Hin1II CATG 2 cut(s) 712, 742
Hin6I GCGC 3 cut(s) 226, 432, 1046
HinP1I GCGC 3 cut(s) 226, 432, 1046
HinfI GANTC 4 cut(s) 288, 518, 562, 671
HphI GGTGA 7 cut(s) 43, 251, 691, 826, 850, 908, 949
Hpy166II GTNNAC 2 cut(s) 732, 817
Hpy188I TCNGA 5 cut(s) 167, 287, 306, 339, 790
Hpy188III TCNNGA 4 cut(s) 95, 254, 406, 607
Hpy8I GTNNAC 2 cut(s) 732, 817
Hpy99I CGWCG 1 cut(s) 667
HpyAV CCTTC 4 cut(s) 403, 604, 889, 958
HpyCH4III ACNGT 6 cut(s) 361, 452, 667, 685, 794, 985
HpyCH4IV ACGT 5 cut(s) 38, 569, 704, 770, 956
HpyCH4V TGCA 4 cut(s) 371, 708, 808, 961
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 862
HpyF3I CTNAG 3 cut(s) 284, 417, 1049
HpySE526I ACGT 5 cut(s) 38, 569, 704, 770, 956
Hsp92II CATG 2 cut(s) 712, 742
HspAI GCGC 3 cut(s) 226, 432, 1046
Kpn2I TCCGGA 2 cut(s) 94, 253
KroI GCCGGC 1 cut(s) 865
KroNI GCCGGC 1 cut(s) 867
Kzo9I GATC 5 cut(s) 155, 297, 455, 542, 634
LguI GCTCTTC 1 cut(s) 331
LmnI GCTCC 4 cut(s) 71, 256, 307, 948
LweI GCATC 2 cut(s) 171, 492
MaeI CTAG 2 cut(s) 32, 524
MaeII ACGT 5 cut(s) 38, 569, 704, 770, 956
MaeIII GTNAC 6 cut(s) 8, 487, 551, 658, 679, 694
MalI GATC 5 cut(s) 157, 299, 457, 544, 636
MboI GATC 5 cut(s) 155, 297, 455, 542, 634
MboII GAAGA 6 cut(s) 318, 450, 485, 586, 763, 991
MflI RGATCY 2 cut(s) 455, 542
MhlI GDGCHC 3 cut(s) 31, 253, 977
MluCI AATT 1 cut(s) 440
MlyI GAGTC 2 cut(s) 512, 680
MmeI TCCRAC 1 cut(s) 362
MreI CGCCGGCG 1 cut(s) 865
MroI TCCGGA 2 cut(s) 94, 253
MroNI GCCGGC 1 cut(s) 865
MseI TTAA 2 cut(s) 443, 1063
MslI CAYNNNNRTG 1 cut(s) 707
MspR9I CCNGG 3 cut(s) 628, 777, 935
MvaI CCWGG 1 cut(s) 628
MvnI CGCG 3 cut(s) 212, 228, 407
MwoI GCNNNNNNNGC 2 cut(s) 234, 862
NaeI GCCGGC 1 cut(s) 867
NciI CCSGG 2 cut(s) 777, 935
NdeII GATC 5 cut(s) 155, 297, 455, 542, 634
NgoMIV GCCGGC 1 cut(s) 865
NlaIII CATG 2 cut(s) 712, 742
NlaIV GGNNCC 6 cut(s) 28, 47, 414, 651, 944, 987
NmuCI GTSAC 5 cut(s) 8, 487, 658, 679, 694
NruI TCGCGA 1 cut(s) 407
PciSI GCTCTTC 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 671
PdiI GCCGGC 1 cut(s) 867
PfeI GAWTC 2 cut(s) 288, 562
Pfl23II CGTACG 1 cut(s) 190
PfoI TCCNGGA 1 cut(s) 626
PkrI GCNGC 5 cut(s) 316, 323, 643, 864, 1045
Ple19I CGATCG 1 cut(s) 300
PleI GAGTC 2 cut(s) 512, 679
PmaCI CACGTG 3 cut(s) 39, 705, 771
PmlI CACGTG 3 cut(s) 39, 705, 771
PpsI GAGTC 2 cut(s) 512, 679
Ppu21I YACGTR 4 cut(s) 39, 570, 705, 771
PpuMI RGGWCCY 1 cut(s) 412
PshAI GACNNNNGTC 1 cut(s) 771
PshBI ATTAAT 1 cut(s) 443
Psp5II RGGWCCY 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 626
PspCI CACGTG 3 cut(s) 39, 705, 771
PspFI CCCAGC 1 cut(s) 54
PspGI CCWGG 1 cut(s) 626
PspLI CGTACG 1 cut(s) 190
PspN4I GGNNCC 6 cut(s) 28, 47, 414, 651, 944, 987
PspPI GGNCC 4 cut(s) 335, 412, 600, 624
PspPPI RGGWCCY 1 cut(s) 412
PsrI GAACNNNNNNTAC 2 cut(s) 809, 841
PsuI RGATCY 2 cut(s) 455, 542
PvuI CGATCG 1 cut(s) 300
RruI TCGCGA 1 cut(s) 407
RsaI GTAC 5 cut(s) 192, 395, 717, 827, 950
RsaNI GTAC 5 cut(s) 191, 394, 716, 826, 949
RseI CAYNNNNRTG 1 cut(s) 707
Rsr2I CGGWCCG 1 cut(s) 335
RsrII CGGWCCG 1 cut(s) 335
SapI GCTCTTC 1 cut(s) 331
SaqAI TTAA 2 cut(s) 443, 1063
SatI GCNGC 5 cut(s) 315, 322, 642, 863, 1044
Sau3AI GATC 5 cut(s) 155, 297, 455, 542, 634
Sau96I GGNCC 4 cut(s) 335, 412, 600, 624
ScaI AGTACT 1 cut(s) 950
SchI GAGTC 2 cut(s) 512, 680
ScrFI CCNGG 3 cut(s) 628, 777, 935
SduI GDGCHC 3 cut(s) 31, 253, 977
SfaNI GCATC 2 cut(s) 171, 492
SgrAI CRCCGGYG 1 cut(s) 865
SinI GGWCC 4 cut(s) 335, 412, 600, 624
SmiMI CAYNNNNRTG 1 cut(s) 707
Sse9I AATT 1 cut(s) 440
SspMI CTAG 2 cut(s) 32, 524
StyD4I CCNGG 3 cut(s) 626, 775, 933
TaaI ACNGT 6 cut(s) 361, 452, 667, 685, 794, 985
TaiI ACGT 5 cut(s) 41, 572, 707, 773, 959
TaqI TCGA 1 cut(s) 977
TasI AATT 1 cut(s) 440
TatI WGTACW 2 cut(s) 393, 948
TauI GCSGC 5 cut(s) 317, 324, 644, 865, 1046
TfiI GAWTC 2 cut(s) 288, 562
Tru1I TTAA 2 cut(s) 443, 1063
Tru9I TTAA 2 cut(s) 443, 1063
TscAI CASTG 2 cut(s) 504, 815
TseFI GTSAC 5 cut(s) 8, 487, 658, 679, 694
Tsp45I GTSAC 5 cut(s) 8, 487, 658, 679, 694
TspDTI ATGAA 2 cut(s) 608, 764
TspGWI ACGGA 2 cut(s) 592, 749
TspRI CASTG 2 cut(s) 504, 815
VpaK11BI GGWCC 4 cut(s) 335, 412, 600, 624
VspI ATTAAT 1 cut(s) 443
XmiI GTMKAC 1 cut(s) 731
XspI CTAG 2 cut(s) 32, 524
ZrmI AGTACT 1 cut(s) 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.