Rw0G002730

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00087
OG0001258
Physical Location & Seq
Forward (+)
13133 .. 14023
891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G002730.1

Sequence Viewer

Length: 891 bp
ATGGAAGGCGGAGGAGAATGCAACGGTGGCGGTGAGAAGCAGCCTTCTGTTTTCAATCGGATATTGCTCAAATACCGGCCGATTGCGCCGAAACCGTTCACCGGAGGCACAGCTTTGGATAAGCTGCCCAAGAGAACCAAGAGAAAGTACGTTAGGACGGTCCGCAAATATAAAGAAGATGAAAACTGGAAAGACCAAATGACGGATGAGCAGCGCGTGGAGACACTGCAGCTGTTGCCTCAGATCATAGAGCAGAGTGGTAGTGACCTCTCCAAGCACTGTGGCGGATCTAGCTGTGAGGTTGATGCTATGATCGTTGAAGATAACAATCACTGGTTGAGCTTGAATGGAGCCGGAGATCCGACCGCGGCGGTGGGGAAGAAGCAGGTTGTTGTTGACAGCGTGTCAGATCCATCGGCGGTGATGGATCGGATGGGAGGAGTGGAGTCGTGGGTGACGGTGGAGTGCGTGAGAGGCACATGCATGATGGCTCCGAGTTCTTCTCAAGGGTTTGGGTTTGGTCTTTCCGGGGTCAGTGCGGACGAGGAGAGAATGAGGAGATTGGAGAGAGACGCATGTCCGGGGTTCATATCGGACGGTTGGAACAGAGTGCAGTGGCTGAACGGAGCGTTTAGGAGGATGGTGATGATGACGAGGCAGCAGCAACCGTTACCGGAGGTAACGGTGTGGTTATGGATGAATGAGGAGCTCCCGCACACGATGAACTCGGCGTTCACGTGCCAAGTGAAACTGCAATACACGGTGGTGGAGAGTCAGAAAAAGGAGAAGAACTACTACTCGCAGTTGGTGCCTTGTGATTTGTGGAGGATGGACGGCGGAGGATTTGCATGGCGGCTCGACGTTAAAACCGCCCTCACTCTCGGCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

296

Amino Acids

33.16

Weight (kDa)

6.84

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 148 - 293 1.8e-46 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 376
AccB1I GGYRCC 1 cut(s) 808
AccII CGCG 2 cut(s) 216, 368
AclWI GGATC 4 cut(s) 295, 353, 404, 435
AcoI YGGCCR 1 cut(s) 77
AcvI CACGTG 1 cut(s) 738
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 2 cut(s) 101, 202
AgsI TTSAA 3 cut(s) 55, 320, 346
AhdI GACNNNNNGTC 1 cut(s) 403
AleI CACNNNNGTG 1 cut(s) 764
AluBI AGCT 6 cut(s) 113, 124, 232, 294, 342, 709
AluI AGCT 6 cut(s) 113, 124, 232, 294, 342, 709
Alw21I GWGCWC 1 cut(s) 711
Alw26I GTCTC 2 cut(s) 215, 564
AlwI GGATC 4 cut(s) 295, 353, 404, 435
AlwNI CAGNNNCTG 1 cut(s) 619
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 6 cut(s) 40, 124, 211, 229, 658, 661
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 2 cut(s) 88, 216
AspS9I GGNCC 1 cut(s) 160
AsuC2I CCSGG 2 cut(s) 529, 582
AsuHPI GGTGA 5 cut(s) 44, 91, 433, 466, 655
AvaII GGWCC 1 cut(s) 160
BanI GGYRCC 1 cut(s) 808
BanII GRGCYC 1 cut(s) 711
BarI GAAGNNNNNNTAC 2 cut(s) 779, 811
BbrPI CACGTG 1 cut(s) 738
Bbv12I GWGCWC 1 cut(s) 711
BbvI GCAGC 6 cut(s) 52, 111, 223, 241, 670, 673
BccI CCATC 6 cut(s) 418, 421, 427, 481, 634, 823
BceAI ACGGC 1 cut(s) 850
BcnI CCSGG 2 cut(s) 529, 582
BcoDI GTCTC 2 cut(s) 215, 564
BfaI CTAG 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 227
BfuAI ACCTGC 1 cut(s) 376
BisI GCNGC 8 cut(s) 41, 125, 212, 230, 369, 659, 662, 854
BlsI GCNGC 8 cut(s) 42, 126, 213, 231, 370, 660, 663, 855
Bme1390I CCNGG 2 cut(s) 529, 582
Bme18I GGWCC 1 cut(s) 160
BmeRI GACNNNNNGTC 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 3 cut(s) 352, 492, 810
BmrFI CCNGG 2 cut(s) 529, 582
BmsI GCATC 1 cut(s) 295
BoxI GACNNNNGTC 1 cut(s) 576
BplI GAGNNNNNCTC 2 cut(s) 487, 519
BpuEI CTTGAG 1 cut(s) 489
BpuMI CCSGG 2 cut(s) 529, 582
BsaAI YACGTR 1 cut(s) 738
BsaBI GATNNNNATC 1 cut(s) 327
BsaJI CCNNGG 3 cut(s) 366, 528, 581
BsaWI WCCGGW 2 cut(s) 101, 673
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 202
Bse118I RCCGGY 1 cut(s) 75
Bse1I ACTGG 2 cut(s) 191, 338
Bse8I GATNNNNATC 1 cut(s) 327
BseDI CCNNGG 3 cut(s) 366, 528, 581
BseGI GGATG 5 cut(s) 211, 438, 645, 702, 834
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 2 cut(s) 101, 202
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 2 cut(s) 191, 338
BseRI GAGGAG 5 cut(s) 27, 453, 560, 571, 719
BseX3I CGGCCG 1 cut(s) 77
BseXI GCAGC 6 cut(s) 52, 111, 223, 241, 670, 673
BsgI GTGCAG 1 cut(s) 632
Bsh1236I CGCG 2 cut(s) 216, 368
Bsh1285I CGRYCG 2 cut(s) 80, 366
BshFI GGCC 1 cut(s) 79
BshNI GGYRCC 1 cut(s) 808
BsiEI CGRYCG 2 cut(s) 80, 366
BsiHKAI GWGCWC 1 cut(s) 711
BsiSI CCGG 6 cut(s) 76, 102, 354, 528, 581, 674
BslI CCNNNNNNNGG 2 cut(s) 101, 202
BsmAI GTCTC 2 cut(s) 215, 564
BsmBI CGTCTC 1 cut(s) 564
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 711
Bsp143I GATC 6 cut(s) 243, 287, 312, 358, 409, 427
BspANI GGCC 1 cut(s) 79
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 2 cut(s) 216, 368
BspLI GGNNCC 3 cut(s) 352, 492, 810
BspMAI CTGCAG 1 cut(s) 231
BspMI ACCTGC 1 cut(s) 376
BspPI GGATC 4 cut(s) 295, 353, 404, 435
BspT107I GGYRCC 1 cut(s) 808
BsrFI RCCGGY 1 cut(s) 75
BsrI ACTGG 2 cut(s) 191, 338
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 3 cut(s) 366, 528, 581
BssMI GATC 6 cut(s) 243, 287, 312, 358, 409, 427
Bst4CI ACNGT 9 cut(s) 26, 96, 160, 281, 460, 599, 669, 685, 763
BstAPI GCANNNNNTGC 2 cut(s) 235, 808
BstBAI YACGTR 1 cut(s) 738
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 5 cut(s) 211, 438, 645, 702, 834
BstFNI CGCG 2 cut(s) 216, 368
BstHHI GCGC 2 cut(s) 88, 216
BstKTI GATC 6 cut(s) 246, 290, 315, 361, 412, 430
BstMAI GTCTC 2 cut(s) 215, 564
BstMBI GATC 6 cut(s) 243, 287, 312, 358, 409, 427
BstMCI CGRYCG 2 cut(s) 80, 366
BstMWI GCNNNNNNNGC 6 cut(s) 27, 85, 235, 291, 474, 808
BstNSI RCATGY 2 cut(s) 483, 579
BstPAI GACNNNNGTC 1 cut(s) 576
BstSCI CCNGG 2 cut(s) 527, 580
BstSFI CTRYAG 1 cut(s) 227
BstUI CGCG 2 cut(s) 216, 368
BstV1I GCAGC 6 cut(s) 52, 111, 223, 241, 670, 673
BstX2I RGATCY 3 cut(s) 287, 358, 409
BstYI RGATCY 3 cut(s) 287, 358, 409
BstZI CGGCCG 1 cut(s) 77
BsuRI GGCC 1 cut(s) 79
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 5 cut(s) 211, 438, 645, 702, 834
BtsI GCAGTG 2 cut(s) 224, 620
BtsIMutI CAGTG 5 cut(s) 224, 277, 331, 541, 620
BveI ACCTGC 1 cut(s) 376
CaiI CAGNNNCTG 1 cut(s) 619
CfoI GCGC 2 cut(s) 88, 216
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 160
Cfr42I CCGCGG 1 cut(s) 369
CpoI CGGWCCG 1 cut(s) 160
CseI GACGC 1 cut(s) 581
Csp6I GTAC 1 cut(s) 148
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CspI CGGWCCG 1 cut(s) 160
CviAII CATG 4 cut(s) 480, 484, 576, 849
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 240
DpnI GATC 6 cut(s) 245, 289, 314, 360, 411, 429
DpnII GATC 6 cut(s) 243, 287, 312, 358, 409, 427
DriI GACNNNNNGTC 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 77
EagI CGGCCG 1 cut(s) 77
Eam1105I GACNNNNNGTC 1 cut(s) 403
EciI GGCGGA 3 cut(s) 24, 300, 852
Ecl136II GAGCTC 1 cut(s) 709
EclXI CGGCCG 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 711
Eco47I GGWCC 1 cut(s) 160
Eco52I CGGCCG 1 cut(s) 77
Eco53kI GAGCTC 1 cut(s) 709
Eco72I CACGTG 1 cut(s) 738
EcoICRI GAGCTC 1 cut(s) 709
EcoT22I ATGCAT 1 cut(s) 485
EcoT38I GRGCYC 1 cut(s) 711
Esp3I CGTCTC 1 cut(s) 564
FaeI CATG 4 cut(s) 483, 487, 579, 852
FaiI YATR 9 cut(s) 171, 248, 311, 481, 485, 577, 590, 694, 850
FatI CATG 4 cut(s) 479, 483, 575, 848
FauI CCCGC 1 cut(s) 720
Fnu4HI GCNGC 8 cut(s) 41, 125, 212, 230, 369, 659, 662, 854
FokI GGATG 5 cut(s) 218, 445, 652, 709, 841
FriOI GRGCYC 1 cut(s) 711
Fsp4HI GCNGC 8 cut(s) 41, 125, 212, 230, 369, 659, 662, 854
FspBI CTAG 1 cut(s) 291
GlaI GCGC 2 cut(s) 87, 215
GluI GCNGC 8 cut(s) 41, 125, 212, 230, 369, 659, 662, 854
HaeIII GGCC 1 cut(s) 79
HapII CCGG 6 cut(s) 76, 102, 354, 528, 581, 674
HgaI GACGC 1 cut(s) 581
HhaI GCGC 2 cut(s) 88, 216
Hin1II CATG 4 cut(s) 483, 487, 579, 852
Hin6I GCGC 2 cut(s) 86, 214
HinP1I GCGC 2 cut(s) 86, 214
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 2 cut(s) 446, 772
HpaII CCGG 6 cut(s) 76, 102, 354, 528, 581, 674
HphI GGTGA 5 cut(s) 44, 91, 433, 466, 655
Hpy166II GTNNAC 3 cut(s) 99, 397, 735
Hpy188I TCNGA 8 cut(s) 60, 243, 363, 409, 432, 495, 595, 777
Hpy8I GTNNAC 3 cut(s) 99, 397, 735
Hpy99I CGWCG 1 cut(s) 863
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 9 cut(s) 26, 96, 160, 281, 460, 599, 669, 685, 763
HpyCH4IV ACGT 3 cut(s) 150, 737, 861
HpyCH4V TGCA 6 cut(s) 21, 229, 483, 613, 754, 848
HpyF10VI GCNNNNNNNGC 6 cut(s) 27, 85, 235, 291, 474, 808
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 3 cut(s) 150, 737, 861
Hsp92II CATG 4 cut(s) 483, 487, 579, 852
HspAI GCGC 2 cut(s) 86, 214
KspI CCGCGG 1 cut(s) 369
Kzo9I GATC 6 cut(s) 243, 287, 312, 358, 409, 427
LmnI GCTCC 5 cut(s) 350, 496, 626, 706, 714
LpnPI CCDG 9 cut(s) 89, 115, 172, 319, 367, 371, 541, 594, 687
Lsp1109I GCAGC 6 cut(s) 52, 111, 223, 241, 670, 673
LweI GCATC 1 cut(s) 295
MaeI CTAG 1 cut(s) 291
MaeII ACGT 3 cut(s) 150, 737, 861
MaeIII GTNAC 4 cut(s) 263, 454, 669, 679
MalI GATC 6 cut(s) 245, 289, 314, 360, 411, 429
MboI GATC 6 cut(s) 243, 287, 312, 358, 409, 427
MboII GAAGA 5 cut(s) 188, 332, 391, 492, 799
MflI RGATCY 3 cut(s) 287, 358, 409
MhlI GDGCHC 1 cut(s) 711
MlyI GAGTC 2 cut(s) 455, 781
MmeI TCCRAC 2 cut(s) 386, 581
Mph1103I ATGCAT 1 cut(s) 485
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 1 cut(s) 864
MslI CAYNNNNRTG 2 cut(s) 482, 764
MspA1I CMGCKG 2 cut(s) 232, 368
MspI CCGG 6 cut(s) 76, 102, 354, 528, 581, 674
MspR9I CCNGG 2 cut(s) 529, 582
Mva1269I GAATGC 1 cut(s) 23
MvnI CGCG 2 cut(s) 216, 368
MwoI GCNNNNNNNGC 6 cut(s) 27, 85, 235, 291, 474, 808
NciI CCSGG 2 cut(s) 529, 582
NdeII GATC 6 cut(s) 243, 287, 312, 358, 409, 427
NlaIII CATG 4 cut(s) 483, 487, 579, 852
NlaIV GGNNCC 3 cut(s) 352, 492, 810
NmeAIII GCCGAG 2 cut(s) 707, 861
NmuCI GTSAC 2 cut(s) 263, 454
NsiI ATGCAT 1 cut(s) 485
NspI RCATGY 2 cut(s) 483, 579
OliI CACNNNNGTG 1 cut(s) 764
PcsI WCGNNNNNNNCGW 1 cut(s) 734
PctI GAATGC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 95
PkrI GCNGC 8 cut(s) 42, 126, 213, 231, 370, 660, 663, 855
PleI GAGTC 2 cut(s) 454, 780
PmaCI CACGTG 1 cut(s) 738
PmlI CACGTG 1 cut(s) 738
PpsI GAGTC 2 cut(s) 454, 780
Ppu21I YACGTR 1 cut(s) 738
PshAI GACNNNNGTC 1 cut(s) 576
Psp124BI GAGCTC 1 cut(s) 711
PspCI CACGTG 1 cut(s) 738
PspN4I GGNNCC 3 cut(s) 352, 492, 810
PspPI GGNCC 1 cut(s) 160
PstI CTGCAG 1 cut(s) 231
PstNI CAGNNNCTG 1 cut(s) 619
PsuI RGATCY 3 cut(s) 287, 358, 409
PvuII CAGCTG 1 cut(s) 232
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 2 cut(s) 482, 764
Rsr2I CGGWCCG 1 cut(s) 160
RsrII CGGWCCG 1 cut(s) 160
SacI GAGCTC 1 cut(s) 711
SacII CCGCGG 1 cut(s) 369
SaqAI TTAA 1 cut(s) 864
SatI GCNGC 8 cut(s) 41, 125, 212, 230, 369, 659, 662, 854
Sau3AI GATC 6 cut(s) 243, 287, 312, 358, 409, 427
Sau96I GGNCC 1 cut(s) 160
SchI GAGTC 2 cut(s) 455, 781
ScrFI CCNGG 2 cut(s) 529, 582
SduI GDGCHC 1 cut(s) 711
SfaNI GCATC 1 cut(s) 295
SfcI CTRYAG 1 cut(s) 227
Sfr303I CCGCGG 1 cut(s) 369
SgrBI CCGCGG 1 cut(s) 369
SinI GGWCC 1 cut(s) 160
SmiMI CAYNNNNRTG 2 cut(s) 482, 764
SmlI CTYRAG 1 cut(s) 504
SmoI CTYRAG 1 cut(s) 504
SspMI CTAG 1 cut(s) 291
SstI GAGCTC 1 cut(s) 711
StyD4I CCNGG 2 cut(s) 527, 580
TaaI ACNGT 9 cut(s) 26, 96, 160, 281, 460, 599, 669, 685, 763
TaiI ACGT 3 cut(s) 153, 740, 864
TaqI TCGA 1 cut(s) 858
TauI GCSGC 2 cut(s) 371, 856
Tru1I TTAA 1 cut(s) 864
Tru9I TTAA 1 cut(s) 864
TscAI CASTG 5 cut(s) 231, 284, 338, 541, 620
TseFI GTSAC 2 cut(s) 263, 454
TseI GCWGC 6 cut(s) 40, 124, 211, 229, 658, 661
Tsp45I GTSAC 2 cut(s) 263, 454
TspDTI ATGAA 4 cut(s) 195, 577, 713, 737
TspGWI ACGGA 2 cut(s) 218, 639
TspRI CASTG 5 cut(s) 231, 284, 338, 541, 620
VpaK11BI GGWCC 1 cut(s) 160
XceI RCATGY 2 cut(s) 483, 579
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 1 cut(s) 291
Zsp2I ATGCAT 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.