Rroxscaffold_5G00380260

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001258
Physical Location & Seq
Forward (+)
60417432 .. 60423145
5714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00380260.1

Sequence Viewer

Length: 651 bp
ATGGAAGGCGGAGGAGAATGCAACGGTGGCGGTGAGAAGAAGCCTTCTGTTTTAAATCGGATATTGCTCAAATACCGGCCGATTGCGCCGAAACCGTTCACCGGAGGCACAGCTTTGGATAAGCTGCCCAAGAGAACCAAGAGAAAGTACGTTAGGACGGTCCGCAAATATAAAGAAGATGAAGACGGAAAAGGCCAAATGACGGATGAGCAGCGCGTGGAGACACTGCAGCTGTTGCCTCAGATCATAAAGCAGAGTGGTAGCAGTGGTAGTGACCTCTCCAAGCACTGTGGCGGATCTAGCTGTGAGGTTGATGCTATGATCGTTGAAGATAACAATCATTGGTTGAGCTTGAGTGGAGCCGGAGATCCGACCGCCGCGGTGGGGAAGAAGCAGGTTGTTGTTGACAGCGTGTCAGATCCATCGGCGGTGATGGATCGGATGGGAGGAGTGGAGTCGTGGGTGACGGTGGAGTGCGTGAGAGGCACATGCATGATGGCTCCGAGTTCTTCTCAAGGGTTTGGGTTTGGGTTTGGTCTTTCCGGGGTCAGTGCGGACGAGGAGAGAATGAGGAGATTGGGAGAGAGACGCATGTCCGGGCTTCATATCGGACGGTTGGAACAGAGTACAGTGGCTGAACGGAGCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

23.3

Weight (kDa)

8.58

Isoelectric Point (pI)

53.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 385
AccII CGCG 2 cut(s) 216, 380
AciI CCGC 9 cut(s) 9, 30, 163, 294, 375, 378, 380, 428, 554
AclWI GGATC 4 cut(s) 304, 362, 413, 444
AcoI YGGCCR 1 cut(s) 77
AfaI GTAC 2 cut(s) 149, 628
AfiI CCNNNNNNNGG 3 cut(s) 101, 202, 384
AgsI TTSAA 1 cut(s) 329
AhdI GACNNNNNGTC 1 cut(s) 412
AluBI AGCT 5 cut(s) 113, 124, 232, 303, 351
AluI AGCT 5 cut(s) 113, 124, 232, 303, 351
Alw26I GTCTC 2 cut(s) 215, 580
AlwI GGATC 4 cut(s) 304, 362, 413, 444
AlwNI CAGNNNCTG 1 cut(s) 635
AoxI GGCC 2 cut(s) 77, 193
ApeKI GCWGC 3 cut(s) 124, 211, 229
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 2 cut(s) 88, 216
AspS9I GGNCC 1 cut(s) 160
AsuC2I CCSGG 2 cut(s) 544, 598
AsuHPI GGTGA 4 cut(s) 44, 91, 442, 475
AvaII GGWCC 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 3 cut(s) 111, 223, 241
BccI CCATC 4 cut(s) 427, 430, 436, 490
BcnI CCSGG 2 cut(s) 544, 598
BcoDI GTCTC 2 cut(s) 215, 580
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 227
BfuAI ACCTGC 1 cut(s) 385
BisI GCNGC 4 cut(s) 125, 212, 230, 378
BlsI GCNGC 4 cut(s) 126, 213, 231, 379
Bme1390I CCNGG 2 cut(s) 544, 598
Bme18I GGWCC 1 cut(s) 160
BmeRI GACNNNNNGTC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 2 cut(s) 361, 501
BmrFI CCNGG 2 cut(s) 544, 598
BmsI GCATC 1 cut(s) 304
BoxI GACNNNNGTC 1 cut(s) 592
BpiI GAAGAC 1 cut(s) 189
BplI GAGNNNNNCTC 2 cut(s) 496, 528
BpuEI CTTGAG 2 cut(s) 373, 498
BpuMI CCSGG 2 cut(s) 544, 598
BsaBI GATNNNNATC 1 cut(s) 336
BsaJI CCNNGG 2 cut(s) 378, 543
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 202, 384
Bse118I RCCGGY 1 cut(s) 75
Bse8I GATNNNNATC 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 378, 543
BseGI GGATG 2 cut(s) 211, 447
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 3 cut(s) 101, 202, 384
BseMII CTCAG 1 cut(s) 254
BseRI GAGGAG 4 cut(s) 27, 462, 575, 586
BseX3I CGGCCG 1 cut(s) 77
BseXI GCAGC 3 cut(s) 111, 223, 241
Bsh1236I CGCG 2 cut(s) 216, 380
Bsh1285I CGRYCG 2 cut(s) 80, 375
BshFI GGCC 2 cut(s) 79, 195
BsiEI CGRYCG 2 cut(s) 80, 375
BsiSI CCGG 5 cut(s) 76, 102, 363, 543, 597
BslI CCNNNNNNNGG 3 cut(s) 101, 202, 384
BsmAI GTCTC 2 cut(s) 215, 580
BsmBI CGTCTC 1 cut(s) 580
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 2 cut(s) 79, 195
Bsp143I GATC 6 cut(s) 243, 296, 321, 367, 418, 436
BspACI CCGC 9 cut(s) 9, 30, 163, 294, 375, 378, 380, 428, 554
BspANI GGCC 2 cut(s) 79, 195
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 2 cut(s) 216, 380
BspLI GGNNCC 2 cut(s) 361, 501
BspMAI CTGCAG 1 cut(s) 231
BspMI ACCTGC 1 cut(s) 385
BspPI GGATC 4 cut(s) 304, 362, 413, 444
BsrFI RCCGGY 1 cut(s) 75
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 2 cut(s) 378, 543
BssMI GATC 6 cut(s) 243, 296, 321, 367, 418, 436
Bst4CI ACNGT 7 cut(s) 26, 96, 160, 290, 469, 615, 631
BstAPI GCANNNNNTGC 1 cut(s) 235
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 2 cut(s) 211, 447
BstFNI CGCG 2 cut(s) 216, 380
BstHHI GCGC 2 cut(s) 88, 216
BstKTI GATC 6 cut(s) 246, 299, 324, 370, 421, 439
BstMAI GTCTC 2 cut(s) 215, 580
BstMBI GATC 6 cut(s) 243, 296, 321, 367, 418, 436
BstMCI CGRYCG 2 cut(s) 80, 375
BstMWI GCNNNNNNNGC 5 cut(s) 27, 85, 235, 300, 483
BstNSI RCATGY 2 cut(s) 492, 595
BstPAI GACNNNNGTC 1 cut(s) 592
BstSCI CCNGG 2 cut(s) 542, 596
BstSFI CTRYAG 1 cut(s) 227
BstUI CGCG 2 cut(s) 216, 380
BstV1I GCAGC 3 cut(s) 111, 223, 241
BstV2I GAAGAC 1 cut(s) 189
BstX2I RGATCY 3 cut(s) 296, 367, 418
BstYI RGATCY 3 cut(s) 296, 367, 418
BstZI CGGCCG 1 cut(s) 77
BsuRI GGCC 2 cut(s) 79, 195
BtgI CCRYGG 1 cut(s) 378
BtsCI GGATG 2 cut(s) 211, 447
BtsI GCAGTG 2 cut(s) 224, 271
BtsIMutI CAGTG 5 cut(s) 224, 271, 286, 556, 636
BveI ACCTGC 1 cut(s) 385
CaiI CAGNNNCTG 1 cut(s) 635
CfoI GCGC 2 cut(s) 88, 216
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 160
Cfr42I CCGCGG 1 cut(s) 381
CpoI CGGWCCG 1 cut(s) 160
CseI GACGC 1 cut(s) 597
Csp6I GTAC 2 cut(s) 148, 627
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CspI CGGWCCG 1 cut(s) 160
CviAII CATG 3 cut(s) 489, 493, 592
CviQI GTAC 2 cut(s) 148, 627
DdeI CTNAG 1 cut(s) 240
DpnI GATC 6 cut(s) 245, 298, 323, 369, 420, 438
DpnII GATC 6 cut(s) 243, 296, 321, 367, 418, 436
DraI TTTAAA 1 cut(s) 54
DriI GACNNNNNGTC 1 cut(s) 412
EaeI YGGCCR 1 cut(s) 77
EagI CGGCCG 1 cut(s) 77
Eam1105I GACNNNNNGTC 1 cut(s) 412
EciI GGCGGA 2 cut(s) 24, 309
EclXI CGGCCG 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 160
Eco52I CGGCCG 1 cut(s) 77
EcoT22I ATGCAT 1 cut(s) 494
Esp3I CGTCTC 1 cut(s) 580
FaeI CATG 3 cut(s) 492, 496, 595
FaiI YATR 7 cut(s) 171, 248, 320, 490, 494, 593, 606
FatI CATG 3 cut(s) 488, 492, 591
Fnu4HI GCNGC 4 cut(s) 125, 212, 230, 378
FokI GGATG 2 cut(s) 218, 454
Fsp4HI GCNGC 4 cut(s) 125, 212, 230, 378
FspBI CTAG 1 cut(s) 300
GlaI GCGC 2 cut(s) 87, 215
GluI GCNGC 4 cut(s) 125, 212, 230, 378
HaeIII GGCC 2 cut(s) 79, 195
HapII CCGG 5 cut(s) 76, 102, 363, 543, 597
HgaI GACGC 1 cut(s) 597
HhaI GCGC 2 cut(s) 88, 216
Hin1II CATG 3 cut(s) 492, 496, 595
Hin6I GCGC 2 cut(s) 86, 214
HinP1I GCGC 2 cut(s) 86, 214
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 1 cut(s) 455
HpaII CCGG 5 cut(s) 76, 102, 363, 543, 597
HphI GGTGA 4 cut(s) 44, 91, 442, 475
Hpy166II GTNNAC 2 cut(s) 99, 406
Hpy188I TCNGA 7 cut(s) 60, 243, 372, 418, 441, 504, 611
Hpy8I GTNNAC 2 cut(s) 99, 406
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 7 cut(s) 26, 96, 160, 290, 469, 615, 631
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 3 cut(s) 21, 229, 492
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 85, 235, 300, 483
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 3 cut(s) 492, 496, 595
HspAI GCGC 2 cut(s) 86, 214
KspI CCGCGG 1 cut(s) 381
Kzo9I GATC 6 cut(s) 243, 296, 321, 367, 418, 436
LmnI GCTCC 3 cut(s) 359, 505, 642
LpnPI CCDG 6 cut(s) 89, 115, 376, 380, 556, 610
Lsp1109I GCAGC 3 cut(s) 111, 223, 241
LweI GCATC 1 cut(s) 304
MaeI CTAG 1 cut(s) 300
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 2 cut(s) 272, 463
MalI GATC 6 cut(s) 245, 298, 323, 369, 420, 438
MboI GATC 6 cut(s) 243, 296, 321, 367, 418, 436
MboII GAAGA 6 cut(s) 49, 188, 194, 341, 400, 501
MflI RGATCY 3 cut(s) 296, 367, 418
MlyI GAGTC 1 cut(s) 464
MmeI TCCRAC 2 cut(s) 395, 597
MnlI CCTC 9 cut(s) 5, 98, 249, 287, 301, 440, 476, 553, 564
Mph1103I ATGCAT 1 cut(s) 494
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 491
MspA1I CMGCKG 2 cut(s) 232, 380
MspI CCGG 5 cut(s) 76, 102, 363, 543, 597
MspR9I CCNGG 2 cut(s) 544, 598
Mva1269I GAATGC 1 cut(s) 23
MvnI CGCG 2 cut(s) 216, 380
MwoI GCNNNNNNNGC 5 cut(s) 27, 85, 235, 300, 483
NciI CCSGG 2 cut(s) 544, 598
NdeII GATC 6 cut(s) 243, 296, 321, 367, 418, 436
NlaIII CATG 3 cut(s) 492, 496, 595
NlaIV GGNNCC 2 cut(s) 361, 501
NmuCI GTSAC 2 cut(s) 272, 463
NsiI ATGCAT 1 cut(s) 494
NspI RCATGY 2 cut(s) 492, 595
PctI GAATGC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 95
PkrI GCNGC 4 cut(s) 126, 213, 231, 379
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
PshAI GACNNNNGTC 1 cut(s) 592
PspN4I GGNNCC 2 cut(s) 361, 501
PspPI GGNCC 1 cut(s) 160
PstI CTGCAG 1 cut(s) 231
PstNI CAGNNNCTG 1 cut(s) 635
PsuI RGATCY 3 cut(s) 296, 367, 418
PvuII CAGCTG 1 cut(s) 232
RsaI GTAC 2 cut(s) 149, 628
RsaNI GTAC 2 cut(s) 148, 627
RseI CAYNNNNRTG 1 cut(s) 491
Rsr2I CGGWCCG 1 cut(s) 160
RsrII CGGWCCG 1 cut(s) 160
SacII CCGCGG 1 cut(s) 381
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 4 cut(s) 125, 212, 230, 378
Sau3AI GATC 6 cut(s) 243, 296, 321, 367, 418, 436
Sau96I GGNCC 1 cut(s) 160
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 2 cut(s) 544, 598
SetI ASST 9 cut(s) 115, 126, 153, 234, 279, 305, 312, 353, 399
SfaNI GCATC 1 cut(s) 304
SfcI CTRYAG 1 cut(s) 227
Sfr303I CCGCGG 1 cut(s) 381
SgrBI CCGCGG 1 cut(s) 381
SinI GGWCC 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 2 cut(s) 352, 513
SmoI CTYRAG 2 cut(s) 352, 513
SsiI CCGC 9 cut(s) 9, 30, 163, 294, 375, 378, 380, 428, 554
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 542, 596
TaaI ACNGT 7 cut(s) 26, 96, 160, 290, 469, 615, 631
TaiI ACGT 1 cut(s) 153
TatI WGTACW 1 cut(s) 626
TauI GCSGC 1 cut(s) 380
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 5 cut(s) 231, 271, 293, 556, 636
TseFI GTSAC 2 cut(s) 272, 463
TseI GCWGC 3 cut(s) 124, 211, 229
Tsp45I GTSAC 2 cut(s) 272, 463
TspDTI ATGAA 2 cut(s) 195, 593
TspGWI ACGGA 2 cut(s) 201, 218
TspRI CASTG 5 cut(s) 231, 271, 293, 556, 636
VpaK11BI GGWCC 1 cut(s) 160
XceI RCATGY 2 cut(s) 492, 595
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 1 cut(s) 300
Zsp2I ATGCAT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.