Prupe.3G301600_v2.0.a1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0001258
Physical Location & Seq
Reverse (-)
26599117 .. 26600972
1856 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G301600.1

Sequence Viewer

Length: 924 bp
ATGGACGCTGGAGATGGTTGGCACGTGGCAGGCGGCGAGAGTCTTGCGCAAGATAAGACGATAATCAACCGGATGATGCTCAGATTCCGGCCGATCGCTCCAAAACCAGCGGCCGTAGGGTCTTCTTCCGGTCCGATTTCGCCGGACAAAAAGAGCCCACATTTGACCAGCAAGAGAGTGAAGAGGAAGTACATTAGGGTTGGGAAGATTAATAATAATAGCGGCAGCGGCAGGAGATTAATTAACACTAGCTCTTCAGCGGAAGAAGAGACGCCGAAAGTCTCCTTGGACTCGGCCATCGTCACTCTTCAGCTGATGCCGGAAAAAACAGACTTTCAAGGTTTTCCAGGTACTGGATCTTGGTGTAGTATAGATCCTACGGTTGCGAAAATCCGGGATAACCGGGACCTACCAACGTGGATGACCCTGAACGACCCTAAGATGAGCAGGTCCGTCGGGAAGAAGTATGTTTCGGCGGGGCCAGATCGGACGGCCGTGGTGCCTCGGGTGATGGCCTTGGAGTCGTGGGTGACGGTGGAAAGCGTGACAGACACGTGCATGGACGTACGAGGGTTAGGTTGTACGGACGTGGAGAAAATGAGGATATTAGAGAAGGACACGTGTCCGGGGTTTATATCAGACGGTTCAAACAGGGTGAAGTGGGTGAACCAGGCCTACAAGAGGATGGTGGTGAGCCAGTGTGAGGAGCAGCAGGCGGAGGCGGCGGAGGTTATAGTGTGGCTGGTGACGAAGGCGAATCTACCGCCGTATGCGTACCCGGGATTCACGTGCAGGGTGAGGGTGCAGTACTACACGTGGCAGAAGGAGAAGTGCTCAAAAATGGTGCCGTGTGATGTGTGGAGGATGGAGTGTGGGTTGGCTTGGAGGCTGGACATCAAGGCTGCGCTTAGTTTGGGACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

34.11

Weight (kDa)

9.23

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 48
Acc36I ACCTGC 1 cut(s) 438
AccB1I GGYRCC 2 cut(s) 499, 844
AccB7I CCANNNNNTGG 1 cut(s) 353
AclWI GGATC 2 cut(s) 364, 368
AcoI YGGCCR 4 cut(s) 89, 111, 294, 492
AcuI CTGAAG 2 cut(s) 240, 293
AcvI CACGTG 5 cut(s) 25, 555, 621, 789, 816
AcyI GRCGYC 1 cut(s) 272
AfaI GTAC 6 cut(s) 191, 352, 567, 583, 776, 809
AfiI CCNNNNNNNGG 3 cut(s) 353, 681, 703
AflIII ACRYGT 4 cut(s) 552, 618, 620, 813
AgsI TTSAA 2 cut(s) 338, 648
AjiI CACGTC 1 cut(s) 589
AjnI CCWGG 2 cut(s) 346, 669
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AluBI AGCT 2 cut(s) 252, 313
AluI AGCT 2 cut(s) 252, 313
Alw21I GWGCWC 1 cut(s) 836
Alw26I GTCTC 2 cut(s) 263, 286
AlwI GGATC 2 cut(s) 364, 368
AlwNI CAGNNNCTG 1 cut(s) 353
Ama87I CYCGRG 2 cut(s) 504, 778
AoxI GGCC 7 cut(s) 89, 111, 294, 479, 492, 513, 672
ApeKI GCWGC 3 cut(s) 225, 709, 902
AseI ATTAAT 2 cut(s) 210, 239
AspLEI GCGC 2 cut(s) 49, 907
AspS9I GGNCC 4 cut(s) 131, 406, 450, 479
AsuC2I CCSGG 5 cut(s) 395, 404, 627, 779, 780
AsuHPI GGTGA 7 cut(s) 520, 541, 667, 676, 703, 757, 808
AvaI CYCGRG 2 cut(s) 504, 778
AvaII GGWCC 3 cut(s) 131, 406, 450
BanI GGYRCC 2 cut(s) 499, 844
BanII GRGCYC 1 cut(s) 158
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BbrPI CACGTG 5 cut(s) 25, 555, 621, 789, 816
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 836
BbvI GCAGC 3 cut(s) 237, 721, 889
BccI CCATC 5 cut(s) 8, 305, 505, 679, 859
BceAI ACGGC 5 cut(s) 98, 479, 507, 751, 832
BcgI CGANNNNNNTGC 4 cut(s) 26, 60, 436, 470
BciT130I CCWGG 2 cut(s) 348, 671
BcnI CCSGG 5 cut(s) 395, 404, 627, 779, 780
BcoDI GTCTC 2 cut(s) 263, 286
BfaI CTAG 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 438
BisI GCNGC 8 cut(s) 34, 111, 223, 226, 229, 710, 723, 903
BlsI GCNGC 8 cut(s) 35, 112, 224, 227, 230, 711, 724, 904
BmcAI AGTACT 1 cut(s) 809
Bme1390I CCNGG 7 cut(s) 348, 395, 404, 627, 671, 779, 780
Bme18I GGWCC 3 cut(s) 131, 406, 450
BmeT110I CYCGRG 2 cut(s) 504, 778
BmgBI CACGTC 1 cut(s) 589
BmgT120I GGNCC 4 cut(s) 131, 406, 450, 479
BmiI GGNNCC 4 cut(s) 407, 480, 501, 846
BmrFI CCNGG 7 cut(s) 348, 395, 404, 627, 671, 779, 780
BmsI GCATC 2 cut(s) 66, 306
BoxI GACNNNNGTC 1 cut(s) 621
BpiI GAAGAC 1 cut(s) 114
BplI GAGNNNNNCTC 2 cut(s) 818, 850
BpmI CTGGAG 1 cut(s) 30
BpuMI CCSGG 5 cut(s) 395, 404, 627, 779, 780
BsaAI YACGTR 5 cut(s) 25, 555, 621, 789, 816
BsaHI GRCGYC 1 cut(s) 272
BsaJI CCNNGG 6 cut(s) 285, 495, 503, 516, 626, 778
BsaWI WCCGGW 2 cut(s) 69, 128
BsaXI ACNNNNNCTCC 2 cut(s) 860, 890
Bsc4I CCNNNNNNNGG 3 cut(s) 353, 681, 703
Bse1I ACTGG 2 cut(s) 358, 697
BseBI CCWGG 2 cut(s) 348, 671
BseDI CCNNGG 6 cut(s) 285, 495, 503, 516, 626, 778
BseGI GGATG 4 cut(s) 78, 426, 690, 870
BseLI CCNNNNNNNGG 3 cut(s) 353, 681, 703
BseMII CTCAG 1 cut(s) 94
BseNI ACTGG 2 cut(s) 358, 697
BseRI GAGGAG 1 cut(s) 719
BseX3I CGGCCG 3 cut(s) 89, 111, 492
BseXI GCAGC 3 cut(s) 237, 721, 889
BsgI GTGCAG 2 cut(s) 811, 824
Bsh1285I CGRYCG 4 cut(s) 92, 96, 114, 495
BshFI GGCC 7 cut(s) 91, 113, 296, 481, 494, 515, 674
BshNI GGYRCC 2 cut(s) 499, 844
BsiEI CGRYCG 4 cut(s) 92, 96, 114, 495
BsiHKAI GWGCWC 1 cut(s) 836
BsiHKCI CYCGRG 2 cut(s) 504, 778
BsiSI CCGG 9 cut(s) 70, 88, 129, 143, 320, 394, 403, 626, 779
BsiWI CGTACG 1 cut(s) 565
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 3 cut(s) 353, 681, 703
BsmAI GTCTC 2 cut(s) 263, 286
BsmBI CGTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 419
BsnI GGCC 7 cut(s) 91, 113, 296, 481, 494, 515, 674
BsoBI CYCGRG 2 cut(s) 504, 778
Bsp1286I GDGCHC 2 cut(s) 158, 836
Bsp143I GATC 4 cut(s) 93, 356, 373, 484
BspANI GGCC 7 cut(s) 91, 113, 296, 481, 494, 515, 674
BspCNI CTCAG 1 cut(s) 93
BspLI GGNNCC 4 cut(s) 407, 480, 501, 846
BspMI ACCTGC 1 cut(s) 438
BspPI GGATC 2 cut(s) 364, 368
BspQI GCTCTTC 1 cut(s) 259
BspT107I GGYRCC 2 cut(s) 499, 844
BsrI ACTGG 2 cut(s) 358, 697
BssECI CCNNGG 6 cut(s) 285, 495, 503, 516, 626, 778
BssMI GATC 4 cut(s) 93, 356, 373, 484
BssNI GRCGYC 1 cut(s) 272
BssT1I CCWWGG 2 cut(s) 285, 516
Bst2UI CCWGG 2 cut(s) 348, 671
Bst4CI ACNGT 3 cut(s) 382, 535, 644
Bst6I CTCTTC 4 cut(s) 176, 259, 261, 312
BstACI GRCGYC 1 cut(s) 272
BstBAI YACGTR 5 cut(s) 25, 555, 621, 789, 816
BstC8I GCNNGC 2 cut(s) 31, 714
BstDEI CTNAG 3 cut(s) 80, 438, 908
BstDSI CCRYGG 1 cut(s) 495
BstENI CCTNNNNNAGG 1 cut(s) 679
BstF5I GGATG 4 cut(s) 78, 426, 690, 870
BstHHI GCGC 2 cut(s) 49, 907
BstKTI GATC 4 cut(s) 96, 359, 376, 487
BstMAI GTCTC 2 cut(s) 263, 286
BstMBI GATC 4 cut(s) 93, 356, 373, 484
BstMCI CGRYCG 4 cut(s) 92, 96, 114, 495
BstMWI GCNNNNNNNGC 2 cut(s) 228, 722
BstNI CCWGG 2 cut(s) 348, 671
BstPAI GACNNNNGTC 1 cut(s) 621
BstSCI CCNGG 7 cut(s) 346, 393, 402, 625, 669, 777, 778
BstV1I GCAGC 3 cut(s) 237, 721, 889
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 2 cut(s) 356, 373
BstYI RGATCY 2 cut(s) 356, 373
BstZI CGGCCG 3 cut(s) 89, 111, 492
BsuRI GGCC 7 cut(s) 91, 113, 296, 481, 494, 515, 674
BtgI CCRYGG 1 cut(s) 495
BtrI CACGTC 1 cut(s) 589
BtsCI GGATG 4 cut(s) 78, 426, 690, 870
BtsIMutI CAGTG 1 cut(s) 704
BveI ACCTGC 1 cut(s) 438
Cac8I GCNNGC 2 cut(s) 31, 714
CaiI CAGNNNCTG 1 cut(s) 353
CfoI GCGC 2 cut(s) 49, 907
Cfr13I GGNCC 4 cut(s) 131, 406, 450, 479
Cfr9I CCCGGG 1 cut(s) 778
CpoI CGGWCCG 1 cut(s) 131
CseI GACGC 2 cut(s) 14, 280
Csp6I GTAC 6 cut(s) 190, 351, 566, 582, 775, 808
CspI CGGWCCG 1 cut(s) 131
CviAII CATG 1 cut(s) 559
CviQI GTAC 6 cut(s) 190, 351, 566, 582, 775, 808
DdeI CTNAG 3 cut(s) 80, 438, 908
DpnI GATC 4 cut(s) 95, 358, 375, 486
DpnII GATC 4 cut(s) 93, 356, 373, 484
EaeI YGGCCR 4 cut(s) 89, 111, 294, 492
EagI CGGCCG 3 cut(s) 89, 111, 492
Eam1104I CTCTTC 4 cut(s) 176, 259, 261, 312
EarI CTCTTC 4 cut(s) 176, 259, 261, 312
EciI GGCGGA 2 cut(s) 731, 740
EclXI CGGCCG 3 cut(s) 89, 111, 492
Eco130I CCWWGG 2 cut(s) 285, 516
Eco147I AGGCCT 1 cut(s) 674
Eco24I GRGCYC 1 cut(s) 158
Eco47I GGWCC 3 cut(s) 131, 406, 450
Eco52I CGGCCG 3 cut(s) 89, 111, 492
Eco57I CTGAAG 2 cut(s) 240, 293
Eco72I CACGTG 5 cut(s) 25, 555, 621, 789, 816
Eco88I CYCGRG 2 cut(s) 504, 778
EcoNI CCTNNNNNAGG 1 cut(s) 679
EcoO109I RGGNCCY 1 cut(s) 406
EcoRII CCWGG 2 cut(s) 346, 669
EcoT14I CCWWGG 2 cut(s) 285, 516
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 2 cut(s) 285, 516
Esp3I CGTCTC 1 cut(s) 263
FaeI CATG 1 cut(s) 562
FaiI YATR 6 cut(s) 371, 468, 560, 635, 734, 771
FaqI GGGAC 1 cut(s) 419
FatI CATG 1 cut(s) 558
FauI CCCGC 1 cut(s) 469
Fnu4HI GCNGC 8 cut(s) 34, 111, 223, 226, 229, 710, 723, 903
FokI GGATG 4 cut(s) 85, 433, 697, 877
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 8 cut(s) 34, 111, 223, 226, 229, 710, 723, 903
FspBI CTAG 1 cut(s) 249
FspI TGCGCA 1 cut(s) 48
GlaI GCGC 2 cut(s) 48, 906
GluI GCNGC 8 cut(s) 34, 111, 223, 226, 229, 710, 723, 903
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 7 cut(s) 91, 113, 296, 481, 494, 515, 674
HapII CCGG 9 cut(s) 70, 88, 129, 143, 320, 394, 403, 626, 779
HgaI GACGC 2 cut(s) 14, 280
HhaI GCGC 2 cut(s) 49, 907
Hin1I GRCGYC 1 cut(s) 272
Hin1II CATG 1 cut(s) 562
Hin6I GCGC 2 cut(s) 47, 905
HinP1I GCGC 2 cut(s) 47, 905
HinfI GANTC 6 cut(s) 40, 84, 290, 521, 757, 783
HpaII CCGG 9 cut(s) 70, 88, 129, 143, 320, 394, 403, 626, 779
HphI GGTGA 7 cut(s) 520, 541, 667, 676, 703, 757, 808
Hpy166II GTNNAC 1 cut(s) 667
Hpy188I TCNGA 4 cut(s) 83, 135, 489, 640
Hpy188III TCNNGA 1 cut(s) 457
Hpy8I GTNNAC 1 cut(s) 667
Hpy99I CGWCG 1 cut(s) 458
HpyAV CCTTC 3 cut(s) 607, 745, 817
HpyCH4III ACNGT 3 cut(s) 382, 535, 644
HpyCH4IV ACGT 8 cut(s) 24, 416, 554, 564, 588, 620, 788, 815
HpyCH4V TGCA 3 cut(s) 558, 792, 805
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 722
HpyF3I CTNAG 3 cut(s) 80, 438, 908
HpySE526I ACGT 8 cut(s) 24, 416, 554, 564, 588, 620, 788, 815
Hsp92I GRCGYC 1 cut(s) 272
Hsp92II CATG 1 cut(s) 562
HspAI GCGC 2 cut(s) 47, 905
Kzo9I GATC 4 cut(s) 93, 356, 373, 484
LguI GCTCTTC 1 cut(s) 259
LmnI GCTCC 2 cut(s) 103, 706
Lsp1109I GCAGC 3 cut(s) 237, 721, 889
LweI GCATC 2 cut(s) 66, 306
MaeI CTAG 1 cut(s) 249
MaeII ACGT 8 cut(s) 24, 416, 554, 564, 588, 620, 788, 815
MaeIII GTNAC 4 cut(s) 301, 529, 544, 745
MalI GATC 4 cut(s) 95, 358, 375, 486
MboI GATC 4 cut(s) 93, 356, 373, 484
MboII GAAGA 9 cut(s) 114, 117, 193, 217, 246, 275, 278, 299, 472
MflI RGATCY 2 cut(s) 356, 373
MhlI GDGCHC 2 cut(s) 158, 836
MluCI AATT 1 cut(s) 240
MlyI GAGTC 3 cut(s) 49, 284, 530
MseI TTAA 4 cut(s) 210, 239, 243, 922
MslI CAYNNNNRTG 1 cut(s) 557
MspA1I CMGCKG 4 cut(s) 110, 228, 260, 313
MspI CCGG 9 cut(s) 70, 88, 129, 143, 320, 394, 403, 626, 779
MspR9I CCNGG 7 cut(s) 348, 395, 404, 627, 671, 779, 780
MvaI CCWGG 2 cut(s) 348, 671
MwoI GCNNNNNNNGC 2 cut(s) 228, 722
NciI CCSGG 5 cut(s) 395, 404, 627, 779, 780
NdeII GATC 4 cut(s) 93, 356, 373, 484
NlaIII CATG 1 cut(s) 562
NlaIV GGNNCC 4 cut(s) 407, 480, 501, 846
NmeAIII GCCGAG 1 cut(s) 272
NmuCI GTSAC 4 cut(s) 301, 529, 544, 745
NsbI TGCGCA 1 cut(s) 48
PacI TTAATTAA 1 cut(s) 243
PceI AGGCCT 1 cut(s) 674
PciSI GCTCTTC 1 cut(s) 259
PfeI GAWTC 3 cut(s) 84, 757, 783
Pfl23II CGTACG 1 cut(s) 565
PflMI CCANNNNNTGG 1 cut(s) 353
PfoI TCCNGGA 1 cut(s) 393
PkrI GCNGC 8 cut(s) 35, 112, 224, 227, 230, 711, 724, 904
Ple19I CGATCG 1 cut(s) 96
PleI GAGTC 3 cut(s) 48, 284, 529
PmaCI CACGTG 5 cut(s) 25, 555, 621, 789, 816
PmlI CACGTG 5 cut(s) 25, 555, 621, 789, 816
PpsI GAGTC 3 cut(s) 48, 284, 529
Ppu21I YACGTR 5 cut(s) 25, 555, 621, 789, 816
PpuMI RGGWCCY 1 cut(s) 406
PshAI GACNNNNGTC 1 cut(s) 621
PshBI ATTAAT 2 cut(s) 210, 239
Psp5II RGGWCCY 1 cut(s) 406
Psp6I CCWGG 2 cut(s) 346, 669
PspCI CACGTG 5 cut(s) 25, 555, 621, 789, 816
PspGI CCWGG 2 cut(s) 346, 669
PspLI CGTACG 1 cut(s) 565
PspN4I GGNNCC 4 cut(s) 407, 480, 501, 846
PspPI GGNCC 4 cut(s) 131, 406, 450, 479
PspPPI RGGWCCY 1 cut(s) 406
PsrI GAACNNNNNNTAC 2 cut(s) 659, 691
PstNI CAGNNNCTG 1 cut(s) 353
PsuI RGATCY 2 cut(s) 356, 373
PvuI CGATCG 1 cut(s) 96
PvuII CAGCTG 1 cut(s) 313
RsaI GTAC 6 cut(s) 191, 352, 567, 583, 776, 809
RsaNI GTAC 6 cut(s) 190, 351, 566, 582, 775, 808
RseI CAYNNNNRTG 1 cut(s) 557
Rsr2I CGGWCCG 1 cut(s) 131
RsrII CGGWCCG 1 cut(s) 131
SapI GCTCTTC 1 cut(s) 259
SaqAI TTAA 4 cut(s) 210, 239, 243, 922
SatI GCNGC 8 cut(s) 34, 111, 223, 226, 229, 710, 723, 903
Sau3AI GATC 4 cut(s) 93, 356, 373, 484
Sau96I GGNCC 4 cut(s) 131, 406, 450, 479
ScaI AGTACT 1 cut(s) 809
SchI GAGTC 3 cut(s) 49, 284, 530
ScrFI CCNGG 7 cut(s) 348, 395, 404, 627, 671, 779, 780
SduI GDGCHC 2 cut(s) 158, 836
SfaNI GCATC 2 cut(s) 66, 306
SinI GGWCC 3 cut(s) 131, 406, 450
SmaI CCCGGG 1 cut(s) 780
SmiMI CAYNNNNRTG 1 cut(s) 557
Sse9I AATT 1 cut(s) 240
SseBI AGGCCT 1 cut(s) 674
SspMI CTAG 1 cut(s) 249
StuI AGGCCT 1 cut(s) 674
StyD4I CCNGG 7 cut(s) 346, 393, 402, 625, 669, 777, 778
StyI CCWWGG 2 cut(s) 285, 516
TaaI ACNGT 3 cut(s) 382, 535, 644
TaiI ACGT 8 cut(s) 27, 419, 557, 567, 591, 623, 791, 818
TasI AATT 1 cut(s) 240
TatI WGTACW 2 cut(s) 189, 807
TauI GCSGC 5 cut(s) 36, 113, 225, 231, 725
TfiI GAWTC 3 cut(s) 84, 757, 783
Tru1I TTAA 4 cut(s) 210, 239, 243, 922
Tru9I TTAA 4 cut(s) 210, 239, 243, 922
TscAI CASTG 1 cut(s) 704
TseFI GTSAC 4 cut(s) 301, 529, 544, 745
TseI GCWGC 3 cut(s) 225, 709, 902
Tsp45I GTSAC 4 cut(s) 301, 529, 544, 745
TspGWI ACGGA 2 cut(s) 442, 599
TspMI CCCGGG 1 cut(s) 778
TspRI CASTG 1 cut(s) 704
Van91I CCANNNNNTGG 1 cut(s) 353
VpaK11BI GGWCC 3 cut(s) 131, 406, 450
VspI ATTAAT 2 cut(s) 210, 239
XagI CCTNNNNNAGG 1 cut(s) 679
XmaI CCCGGG 1 cut(s) 778
XspI CTAG 1 cut(s) 249
ZrmI AGTACT 1 cut(s) 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.