RchiOBHm_Chr2g0174661

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001258
Physical Location & Seq
Reverse (-)
87198607 .. 87202639
4033 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54180

Sequence Viewer

Length: 909 bp
ATGGAAGGAGGTGGAGAAGGGTGGCGCCGTATGATAAGCGGTGCGGAGGATAAGTATGTGTTGAATCAGATAATGCTGAGATTCCGGCCGATTGCGCCGAAGCCAGTCACCGGAGGGTCAGATTCGGGTGAGCCGCCGACGGGTAGGAGTAACGCGCTCGCTTCCAGGGGGAGAACCAAGAGGAAGTACGTTAGGGTTCGTAAGAATGTTAACGGCGAGGAGGAGAGTGGGAGAGAGAGGGTGGACAGTAAACGAGTGGTGACACTGCAGCTGTTGCCGGAGATCGAGAAGAGCGGCGACTACAGCAGTGACCAATCGACGGACGGCGGATCTAGTTGTGAGTTTGATTCTAGTATCGGCACAAATCATCAGTGGTTGAGTCTTAGTAAGATCGGAAGAGAGAATTACATGAGAGCGGATTCGGCGGCGGATCCGGCGGCGTTGATGGACCAGATGGGAGGAGTGGAGTCGTGGGTGACAGTGGAGTGCGTGACAGGCACATGCATGAAGGCTCCACCTCCTCAAGGGTTGGGAATCATCACTACGGACGAGGAGAGAATGAGGAGTCTGGATGTTGACACGTGTCCGGGGTTCGTCTCCGACGGTTGGAACAGGGTTTGGTGGCTGAACGGAGCGTTCAGGAGGATGGTGATGATGGCGTGGCAGCAACAGTTGCCGGAGATAGCCGTGTGGTTAGCGATGAACGAGGAGCTGCCGTATACCCACTCGGCGTTTACGTGCCAGGTGAAGCTGAGATACACTGTGGGCAACAAGGAGAAGGAGAAGTACTACCACTCGCAAATGGTGCCTTGTGATTTGTGGAGAATGGACGGAGGAGGATTTGCATGGAGGCTCGACGTTAAAGCTGCGCTCACTCTGGCCGTTGATGCAGCTCCACTACATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

302

Amino Acids

33.71

Weight (kDa)

6.16

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 155 - 292 3.5e-51 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 24, 805
AccBSI CCGCTC 2 cut(s) 294, 416
AccI GTMKAC 1 cut(s) 719
AccII CGCG 1 cut(s) 155
AciI CCGC 9 cut(s) 39, 44, 134, 294, 327, 416, 425, 428, 437
AclWI GGATC 3 cut(s) 337, 425, 438
AcoI YGGCCR 2 cut(s) 86, 879
AcvI CACGTG 1 cut(s) 582
AcyI GRCGYC 1 cut(s) 25
AfaI GTAC 2 cut(s) 188, 788
AfiI CCNNNNNNNGG 5 cut(s) 110, 140, 319, 524, 606
AflIII ACRYGT 2 cut(s) 579, 581
AgsI TTSAA 1 cut(s) 64
AjnI CCWGG 2 cut(s) 164, 741
AluBI AGCT 5 cut(s) 271, 712, 751, 866, 893
AluI AGCT 5 cut(s) 271, 712, 751, 866, 893
Alw26I GTCTC 1 cut(s) 601
AlwI GGATC 3 cut(s) 337, 425, 438
AoxI GGCC 2 cut(s) 86, 879
ApeKI GCWGC 5 cut(s) 268, 664, 712, 866, 890
AspLEI GCGC 4 cut(s) 27, 97, 157, 871
AspS9I GGNCC 1 cut(s) 448
AsuC2I CCSGG 1 cut(s) 588
AsuHPI GGTGA 6 cut(s) 100, 140, 271, 487, 661, 757
AvaII GGWCC 1 cut(s) 448
BamHI GGATCC 1 cut(s) 430
BanI GGYRCC 2 cut(s) 24, 805
BarI GAAGNNNNNNTAC 4 cut(s) 740, 770, 772, 802
BbrPI CACGTG 1 cut(s) 582
BbvI GCAGC 5 cut(s) 280, 676, 699, 853, 902
BccI CCATC 4 cut(s) 439, 448, 640, 649
BceAI ACGGC 6 cut(s) 12, 229, 340, 671, 700, 866
BciT130I CCWGG 2 cut(s) 166, 743
BcnI CCSGG 1 cut(s) 588
BcoDI GTCTC 1 cut(s) 601
BfaI CTAG 2 cut(s) 333, 351
BfmI CTRYAG 2 cut(s) 266, 301
BfoI RGCGCY 1 cut(s) 28
BisI GCNGC 9 cut(s) 134, 269, 295, 426, 438, 665, 713, 867, 891
BlsI GCNGC 9 cut(s) 135, 270, 296, 427, 439, 666, 714, 868, 892
BmcAI AGTACT 1 cut(s) 788
Bme1390I CCNGG 3 cut(s) 166, 588, 743
Bme18I GGWCC 1 cut(s) 448
BmgT120I GGNCC 1 cut(s) 448
BmiI GGNNCC 4 cut(s) 26, 432, 513, 807
BmrFI CCNGG 3 cut(s) 166, 588, 743
BmsI GCATC 1 cut(s) 877
BoxI GACNNNNGTC 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 507
BpuMI CCSGG 1 cut(s) 588
BsaAI YACGTR 2 cut(s) 582, 738
BsaHI GRCGYC 1 cut(s) 25
BsaJI CCNNGG 2 cut(s) 165, 587
BsaWI WCCGGW 1 cut(s) 110
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 701, 731
Bsc4I CCNNNNNNNGG 5 cut(s) 110, 140, 319, 524, 606
Bse1I ACTGG 1 cut(s) 104
BseBI CCWGG 2 cut(s) 166, 743
BseDI CCNNGG 2 cut(s) 165, 587
BseGI GGATG 2 cut(s) 577, 651
BseLI CCNNNNNNNGG 5 cut(s) 110, 140, 319, 524, 606
BseMII CTCAG 2 cut(s) 68, 743
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 8 cut(s) 233, 236, 474, 510, 566, 577, 722, 849
BseX3I CGGCCG 1 cut(s) 86
BseXI GCAGC 5 cut(s) 280, 676, 699, 853, 902
Bsh1236I CGCG 1 cut(s) 155
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 88, 881
BshNI GGYRCC 2 cut(s) 24, 805
BsiEI CGRYCG 1 cut(s) 89
BsiSI CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
BslI CCNNNNNNNGG 5 cut(s) 110, 140, 319, 524, 606
BsmAI GTCTC 1 cut(s) 601
BsmBI CGTCTC 1 cut(s) 601
BsnI GGCC 2 cut(s) 88, 881
Bsp143I GATC 4 cut(s) 282, 329, 390, 430
BspACI CCGC 9 cut(s) 39, 44, 134, 294, 327, 416, 425, 428, 437
BspANI GGCC 2 cut(s) 88, 881
BspCNI CTCAG 2 cut(s) 69, 744
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 4 cut(s) 26, 432, 513, 807
BspMAI CTGCAG 1 cut(s) 270
BspPI GGATC 3 cut(s) 337, 425, 438
BspQI GCTCTTC 1 cut(s) 284
BspT107I GGYRCC 2 cut(s) 24, 805
BsrBI CCGCTC 2 cut(s) 294, 416
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 165, 587
BssMI GATC 4 cut(s) 282, 329, 390, 430
BssNAI GTATAC 1 cut(s) 720
BssNI GRCGYC 1 cut(s) 25
Bst1107I GTATAC 1 cut(s) 720
Bst2UI CCWGG 2 cut(s) 166, 743
Bst4CI ACNGT 5 cut(s) 248, 481, 605, 672, 763
Bst6I CTCTTC 2 cut(s) 284, 391
BstACI GRCGYC 1 cut(s) 25
BstAPI GCANNNNNTGC 3 cut(s) 274, 673, 805
BstBAI YACGTR 2 cut(s) 582, 738
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 3 cut(s) 77, 383, 752
BstENI CCTNNNNNAGG 1 cut(s) 522
BstF5I GGATG 2 cut(s) 577, 651
BstFNI CGCG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 28
BstHHI GCGC 4 cut(s) 27, 97, 157, 871
BstKTI GATC 4 cut(s) 285, 332, 393, 433
BstMAI GTCTC 1 cut(s) 601
BstMBI GATC 4 cut(s) 282, 329, 390, 430
BstMCI CGRYCG 1 cut(s) 89
BstMWI GCNNNNNNNGC 9 cut(s) 94, 274, 303, 422, 434, 495, 673, 805, 887
BstNI CCWGG 2 cut(s) 166, 743
BstNSI RCATGY 1 cut(s) 504
BstPAI GACNNNNGTC 1 cut(s) 582
BstSCI CCNGG 3 cut(s) 164, 586, 741
BstSFI CTRYAG 2 cut(s) 266, 301
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 5 cut(s) 280, 676, 699, 853, 902
BstX2I RGATCY 2 cut(s) 329, 430
BstYI RGATCY 2 cut(s) 329, 430
BstZ17I GTATAC 1 cut(s) 720
BstZI CGGCCG 1 cut(s) 86
BsuRI GGCC 2 cut(s) 88, 881
BtgZI GCGATG 1 cut(s) 713
BtsCI GGATG 2 cut(s) 577, 651
BtsI GCAGTG 2 cut(s) 263, 313
BtsIMutI CAGTG 5 cut(s) 263, 313, 377, 486, 759
Cac8I GCNNGC 1 cut(s) 159
CfoI GCGC 4 cut(s) 27, 97, 157, 871
Cfr13I GGNCC 1 cut(s) 448
Csp6I GTAC 2 cut(s) 187, 787
CviAII CATG 4 cut(s) 409, 501, 505, 846
CviQI GTAC 2 cut(s) 187, 787
DdeI CTNAG 3 cut(s) 77, 383, 752
DinI GGCGCC 1 cut(s) 26
DpnI GATC 4 cut(s) 284, 331, 392, 432
DpnII GATC 4 cut(s) 282, 329, 390, 430
EaeI YGGCCR 2 cut(s) 86, 879
EagI CGGCCG 1 cut(s) 86
Eam1104I CTCTTC 2 cut(s) 284, 391
EarI CTCTTC 2 cut(s) 284, 391
EciI GGCGGA 2 cut(s) 342, 443
EclXI CGGCCG 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 448
Eco52I CGGCCG 1 cut(s) 86
Eco72I CACGTG 1 cut(s) 582
EcoNI CCTNNNNNAGG 1 cut(s) 522
EcoRII CCWGG 2 cut(s) 164, 741
EcoT22I ATGCAT 1 cut(s) 506
EgeI GGCGCC 1 cut(s) 26
EheI GGCGCC 1 cut(s) 26
Esp3I CGTCTC 1 cut(s) 601
FaeI CATG 4 cut(s) 412, 504, 508, 849
FaiI YATR 8 cut(s) 32, 57, 410, 502, 506, 720, 847, 903
FatI CATG 4 cut(s) 408, 500, 504, 845
FblI GTMKAC 1 cut(s) 719
Fnu4HI GCNGC 9 cut(s) 134, 269, 295, 426, 438, 665, 713, 867, 891
FokI GGATG 2 cut(s) 584, 658
Fsp4HI GCNGC 9 cut(s) 134, 269, 295, 426, 438, 665, 713, 867, 891
FspBI CTAG 2 cut(s) 333, 351
GlaI GCGC 4 cut(s) 26, 96, 156, 870
GluI GCNGC 9 cut(s) 134, 269, 295, 426, 438, 665, 713, 867, 891
HaeII RGCGCY 1 cut(s) 28
HaeIII GGCC 2 cut(s) 88, 881
HapII CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
HhaI GCGC 4 cut(s) 27, 97, 157, 871
Hin1I GRCGYC 1 cut(s) 25
Hin1II CATG 4 cut(s) 412, 504, 508, 849
Hin6I GCGC 4 cut(s) 25, 95, 155, 869
HinP1I GCGC 4 cut(s) 25, 95, 155, 869
HincII GTYRAC 2 cut(s) 211, 577
HindII GTYRAC 2 cut(s) 211, 577
HinfI GANTC 9 cut(s) 64, 81, 122, 347, 379, 419, 467, 534, 565
HpaI GTTAAC 1 cut(s) 211
HpaII CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
HphI GGTGA 6 cut(s) 100, 140, 271, 487, 661, 757
Hpy166II GTNNAC 6 cut(s) 211, 244, 251, 577, 720, 735
Hpy188I TCNGA 4 cut(s) 69, 121, 395, 601
Hpy188III TCNNGA 3 cut(s) 286, 569, 640
Hpy8I GTNNAC 6 cut(s) 211, 244, 251, 577, 720, 735
Hpy99I CGWCG 4 cut(s) 142, 322, 605, 860
HpyAV CCTTC 3 cut(s) 11, 502, 772
HpyCH4III ACNGT 5 cut(s) 248, 481, 605, 672, 763
HpyCH4IV ACGT 4 cut(s) 189, 581, 737, 858
HpyCH4V TGCA 4 cut(s) 268, 504, 845, 890
HpyF10VI GCNNNNNNNGC 9 cut(s) 94, 274, 303, 422, 434, 495, 673, 805, 887
HpyF3I CTNAG 3 cut(s) 77, 383, 752
HpySE526I ACGT 4 cut(s) 189, 581, 737, 858
Hsp92I GRCGYC 1 cut(s) 25
Hsp92II CATG 4 cut(s) 412, 504, 508, 849
HspAI GCGC 4 cut(s) 25, 95, 155, 869
KasI GGCGCC 1 cut(s) 24
KspAI GTTAAC 1 cut(s) 211
Kzo9I GATC 4 cut(s) 282, 329, 390, 430
LguI GCTCTTC 1 cut(s) 284
LmnI GCTCC 4 cut(s) 517, 632, 709, 898
Lsp1109I GCAGC 5 cut(s) 280, 676, 699, 853, 902
LweI GCATC 1 cut(s) 877
MaeI CTAG 2 cut(s) 333, 351
MaeII ACGT 4 cut(s) 189, 581, 737, 858
MaeIII GTNAC 6 cut(s) 106, 149, 259, 308, 475, 490
MalI GATC 4 cut(s) 284, 331, 392, 432
MbiI CCGCTC 2 cut(s) 294, 416
MboI GATC 4 cut(s) 282, 329, 390, 430
MboII GAAGA 2 cut(s) 301, 408
MflI RGATCY 2 cut(s) 329, 430
MluCI AATT 1 cut(s) 403
Mly113I GGCGCC 1 cut(s) 25
MlyI GAGTC 3 cut(s) 388, 476, 574
MmeI TCCRAC 2 cut(s) 587, 624
Mph1103I ATGCAT 1 cut(s) 506
MseI TTAA 2 cut(s) 210, 861
MslI CAYNNNNRTG 1 cut(s) 503
MspA1I CMGCKG 1 cut(s) 271
MspI CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
MspR9I CCNGG 3 cut(s) 166, 588, 743
MvaI CCWGG 2 cut(s) 166, 743
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 9 cut(s) 94, 274, 303, 422, 434, 495, 673, 805, 887
NarI GGCGCC 1 cut(s) 25
NciI CCSGG 1 cut(s) 588
NdeII GATC 4 cut(s) 282, 329, 390, 430
NlaIII CATG 4 cut(s) 412, 504, 508, 849
NlaIV GGNNCC 4 cut(s) 26, 432, 513, 807
NmeAIII GCCGAG 1 cut(s) 707
NmuCI GTSAC 5 cut(s) 106, 259, 308, 475, 490
NsiI ATGCAT 1 cut(s) 506
NspI RCATGY 1 cut(s) 504
PciSI GCTCTTC 1 cut(s) 284
PcsI WCGNNNNNNNCGW 1 cut(s) 734
PfeI GAWTC 6 cut(s) 64, 81, 122, 347, 419, 534
PkrI GCNGC 9 cut(s) 135, 270, 296, 427, 439, 666, 714, 868, 892
PleI GAGTC 3 cut(s) 387, 475, 573
PluTI GGCGCC 1 cut(s) 28
PmaCI CACGTG 1 cut(s) 582
PmlI CACGTG 1 cut(s) 582
PpsI GAGTC 3 cut(s) 387, 475, 573
Ppu21I YACGTR 2 cut(s) 582, 738
PshAI GACNNNNGTC 1 cut(s) 582
Psp6I CCWGG 2 cut(s) 164, 741
PspCI CACGTG 1 cut(s) 582
PspGI CCWGG 2 cut(s) 164, 741
PspN4I GGNNCC 4 cut(s) 26, 432, 513, 807
PspPI GGNCC 1 cut(s) 448
PstI CTGCAG 1 cut(s) 270
PsuI RGATCY 2 cut(s) 329, 430
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 2 cut(s) 188, 788
RsaNI GTAC 2 cut(s) 187, 787
RseI CAYNNNNRTG 1 cut(s) 503
SapI GCTCTTC 1 cut(s) 284
SaqAI TTAA 2 cut(s) 210, 861
SatI GCNGC 9 cut(s) 134, 269, 295, 426, 438, 665, 713, 867, 891
Sau3AI GATC 4 cut(s) 282, 329, 390, 430
Sau96I GGNCC 1 cut(s) 448
ScaI AGTACT 1 cut(s) 788
SchI GAGTC 3 cut(s) 388, 476, 574
ScrFI CCNGG 3 cut(s) 166, 588, 743
SfaNI GCATC 1 cut(s) 877
SfcI CTRYAG 2 cut(s) 266, 301
SfoI GGCGCC 1 cut(s) 26
SinI GGWCC 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 522
SmoI CTYRAG 1 cut(s) 522
Sse9I AATT 1 cut(s) 403
SsiI CCGC 9 cut(s) 39, 44, 134, 294, 327, 416, 425, 428, 437
SspDI GGCGCC 1 cut(s) 24
SspMI CTAG 2 cut(s) 333, 351
StyD4I CCNGG 3 cut(s) 164, 586, 741
TaaI ACNGT 5 cut(s) 248, 481, 605, 672, 763
TaiI ACGT 4 cut(s) 192, 584, 740, 861
TaqI TCGA 3 cut(s) 285, 317, 855
TasI AATT 1 cut(s) 403
TatI WGTACW 1 cut(s) 786
TauI GCSGC 4 cut(s) 136, 297, 428, 440
TfiI GAWTC 6 cut(s) 64, 81, 122, 347, 419, 534
Tru1I TTAA 2 cut(s) 210, 861
Tru9I TTAA 2 cut(s) 210, 861
TscAI CASTG 5 cut(s) 270, 313, 377, 486, 766
TseFI GTSAC 5 cut(s) 106, 259, 308, 475, 490
TseI GCWGC 5 cut(s) 268, 664, 712, 866, 890
Tsp45I GTSAC 5 cut(s) 106, 259, 308, 475, 490
TspDTI ATGAA 2 cut(s) 521, 716
TspGWI ACGGA 4 cut(s) 335, 560, 645, 846
TspRI CASTG 5 cut(s) 270, 313, 377, 486, 766
VpaK11BI GGWCC 1 cut(s) 448
XagI CCTNNNNNAGG 1 cut(s) 522
XceI RCATGY 1 cut(s) 504
XmiI GTMKAC 1 cut(s) 719
XspI CTAG 2 cut(s) 333, 351
ZrmI AGTACT 1 cut(s) 788
Zsp2I ATGCAT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.