pycom111g01280

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0001258
Physical Location & Seq
Forward (+)
819122 .. 820508
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g01280.1

Sequence Viewer

Length: 783 bp
ATGGACGCCGGAGATGGATGGCGCGTGGCAGGCGGTGAGACTGGTGCTCCGGATAAGACGATAATCAACCAGATAATGCTCAGATTCCGGCCGATCGCTCCGAAACCGGCGGCTGGCGGCTCTTTCTCCGGTCCGACTTCGGTGGATGGTAAAACCGTCCTTTCCGCAAGCAAGAGAGTAAAGAGGAAGTACATTAGGGTCGCGAAGGACCCTAAGAATAATAACAGCGCTAGAAAATTAATCAACAGTGGATCTTCCACTGATGATAATCCGACGGATGTCGTCACTCTTCCACTGATGCCGGAAAAAACAGACTCTCTAGGTTTTTCAGGTAGTGGATCTTGGGATAACAGGGAGATTCCTACGTGGATGAACCTAAACCCTAAGATGAACTGGTCCGTCTGGAACGAGGACAGCCGGTCCAGGACAGATCGTGCGGCGGTGGTGCCTCGTGTGGCGGCGGTGGAGTCGTGGGTGACGGTGGAAAGCGTGACAGACACGTGCATGGAAGTACGAGGGTTAGGGAGAAGTGCTCGAAGACGGTGCCGTGCGATGTGTGGAGGATGGAGTGTGGATGGGCTTGGAGGCTGGATATTAAGGCGGCGCTTGGTTTGGGTCTTTAAACTAGAAGGAGCAGAGCCGGAGGGAGCAGAAGGTGCTAATAAAAATCAGGGAGTAGGTAAAAGCTTTTGTTTCGATCTAAAACCATGGAAAGGGAAAGGAGGAGAGGAAGAGAAGTTCAAACAAAGCAACACGTGGTTGCTCTCCTTGAGCCACACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

28.5

Weight (kDa)

9.69

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 445, 543
AccII CGCG 2 cut(s) 24, 203
AccIII TCCGGA 1 cut(s) 49
AciI CCGC 9 cut(s) 33, 110, 117, 165, 437, 440, 458, 461, 601
AclWI GGATC 2 cut(s) 259, 346
AcoI YGGCCR 1 cut(s) 89
AcvI CACGTG 2 cut(s) 501, 756
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 2 cut(s) 191, 513
AfeI AGCGCT 1 cut(s) 229
AfiI CCNNNNNNNGG 2 cut(s) 113, 713
AflIII ACRYGT 2 cut(s) 498, 753
AgsI TTSAA 1 cut(s) 742
AhdI GACNNNNNGTC 1 cut(s) 418
AjnI CCWGG 1 cut(s) 422
AloI GAACNNNNNNTCC 2 cut(s) 722, 754
AluBI AGCT 1 cut(s) 687
AluI AGCT 1 cut(s) 687
Alw21I GWGCWC 2 cut(s) 49, 535
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 2 cut(s) 259, 346
Aor13HI TCCGGA 1 cut(s) 49
Aor51HI AGCGCT 1 cut(s) 229
AoxI GGCC 1 cut(s) 89
AseI ATTAAT 1 cut(s) 239
AspLEI GCGC 3 cut(s) 24, 230, 606
AspS9I GGNCC 4 cut(s) 131, 208, 396, 420
AsuHPI GGTGA 2 cut(s) 47, 487
AvaII GGWCC 4 cut(s) 131, 208, 396, 420
BanI GGYRCC 2 cut(s) 445, 543
BauI CACGAG 1 cut(s) 450
BbrPI CACGTG 2 cut(s) 501, 756
BbsI GAAGAC 1 cut(s) 544
Bbv12I GWGCWC 2 cut(s) 49, 535
BccI CCATC 5 cut(s) 8, 12, 140, 558, 569
BceAI ACGGC 1 cut(s) 531
BcgI CGANNNNNNTGC 2 cut(s) 525, 559
BciT130I CCWGG 1 cut(s) 424
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 4 cut(s) 231, 320, 626, 781
BfoI RGCGCY 2 cut(s) 231, 607
BisI GCNGC 5 cut(s) 111, 118, 438, 459, 602
BlsI GCNGC 5 cut(s) 112, 119, 439, 460, 603
Bme1390I CCNGG 1 cut(s) 424
Bme18I GGWCC 4 cut(s) 131, 208, 396, 420
BmeRI GACNNNNNGTC 1 cut(s) 418
BmgT120I GGNCC 4 cut(s) 131, 208, 396, 420
BmiI GGNNCC 3 cut(s) 210, 447, 545
BmrFI CCNGG 1 cut(s) 424
BmsI GCATC 1 cut(s) 288
BoxI GACNNNNGTC 1 cut(s) 278
BpiI GAAGAC 1 cut(s) 544
BplI GAGNNNNNCTC 2 cut(s) 517, 549
BsaAI YACGTR 3 cut(s) 366, 501, 756
BsaBI GATNNNNATC 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 707
BsaWI WCCGGW 2 cut(s) 49, 128
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 713
Bse118I RCCGGY 2 cut(s) 106, 417
Bse1I ACTGG 2 cut(s) 46, 398
Bse8I GATNNNNATC 1 cut(s) 267
BseAI TCCGGA 1 cut(s) 49
BseBI CCWGG 1 cut(s) 424
BseDI CCNNGG 1 cut(s) 707
BseGI GGATG 6 cut(s) 23, 151, 283, 375, 569, 580
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 2 cut(s) 113, 713
BseMII CTCAG 1 cut(s) 94
BseNI ACTGG 2 cut(s) 46, 398
BseRI GAGGAG 1 cut(s) 738
BseX3I CGGCCG 1 cut(s) 89
Bsh1236I CGCG 2 cut(s) 24, 203
Bsh1285I CGRYCG 2 cut(s) 92, 96
BshFI GGCC 1 cut(s) 91
BshNI GGYRCC 2 cut(s) 445, 543
BsiEI CGRYCG 2 cut(s) 92, 96
BsiHKAI GWGCWC 2 cut(s) 49, 535
BsiSI CCGG 8 cut(s) 9, 50, 88, 107, 129, 302, 418, 641
BslI CCNNNNNNNGG 2 cut(s) 113, 713
BsmAI GTCTC 1 cut(s) 32
BsnI GGCC 1 cut(s) 91
Bsp1286I GDGCHC 2 cut(s) 49, 535
Bsp13I TCCGGA 1 cut(s) 49
Bsp143I GATC 5 cut(s) 93, 251, 338, 430, 697
Bsp19I CCATGG 1 cut(s) 707
Bsp68I TCGCGA 1 cut(s) 203
BspACI CCGC 9 cut(s) 33, 110, 117, 165, 437, 440, 458, 461, 601
BspANI GGCC 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 93
BspEI TCCGGA 1 cut(s) 49
BspFNI CGCG 2 cut(s) 24, 203
BspLI GGNNCC 3 cut(s) 210, 447, 545
BspPI GGATC 2 cut(s) 259, 346
BspT107I GGYRCC 2 cut(s) 445, 543
BsrFI RCCGGY 2 cut(s) 106, 417
BsrI ACTGG 2 cut(s) 46, 398
BssAI RCCGGY 2 cut(s) 106, 417
BssECI CCNNGG 1 cut(s) 707
BssMI GATC 5 cut(s) 93, 251, 338, 430, 697
BssNI GRCGYC 1 cut(s) 6
BssSI CACGAG 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 707
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 424
Bst4CI ACNGT 4 cut(s) 157, 248, 481, 543
Bst6I CTCTTC 2 cut(s) 294, 726
BstACI GRCGYC 1 cut(s) 6
BstAPI GCANNNNNTGC 1 cut(s) 656
BstBAI YACGTR 3 cut(s) 366, 501, 756
BstC8I GCNNGC 3 cut(s) 31, 115, 169
BstDEI CTNAG 3 cut(s) 80, 213, 384
BstDSI CCRYGG 1 cut(s) 707
BstF5I GGATG 6 cut(s) 23, 151, 283, 375, 569, 580
BstFNI CGCG 2 cut(s) 24, 203
BstH2I RGCGCY 2 cut(s) 231, 607
BstHHI GCGC 3 cut(s) 24, 230, 606
BstKTI GATC 5 cut(s) 96, 254, 341, 433, 700
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 5 cut(s) 93, 251, 338, 430, 697
BstMCI CGRYCG 2 cut(s) 92, 96
BstMWI GCNNNNNNNGC 2 cut(s) 30, 656
BstNI CCWGG 1 cut(s) 424
BstPAI GACNNNNGTC 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 422
BstUI CGCG 2 cut(s) 24, 203
BstV2I GAAGAC 1 cut(s) 544
BstX2I RGATCY 2 cut(s) 251, 338
BstYI RGATCY 2 cut(s) 251, 338
BstZI CGGCCG 1 cut(s) 89
BsuRI GGCC 1 cut(s) 91
BtgI CCRYGG 1 cut(s) 707
BtgZI GCGATG 1 cut(s) 566
BtsCI GGATG 6 cut(s) 23, 151, 283, 375, 569, 580
BtsIMutI CAGTG 3 cut(s) 253, 258, 293
BtuMI TCGCGA 1 cut(s) 203
Cac8I GCNNGC 3 cut(s) 31, 115, 169
CfoI GCGC 3 cut(s) 24, 230, 606
Cfr10I RCCGGY 2 cut(s) 106, 417
Cfr13I GGNCC 4 cut(s) 131, 208, 396, 420
CpoI CGGWCCG 1 cut(s) 131
CseI GACGC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 190, 512
CspI CGGWCCG 1 cut(s) 131
CviAII CATG 2 cut(s) 505, 708
CviJI RGCY 9 cut(s) 91, 113, 120, 417, 580, 588, 640, 687, 774
CviKI_1 RGCY 9 cut(s) 91, 113, 120, 417, 580, 588, 640, 687, 774
CviQI GTAC 2 cut(s) 190, 512
DdeI CTNAG 3 cut(s) 80, 213, 384
DpnI GATC 5 cut(s) 95, 253, 340, 432, 699
DpnII GATC 5 cut(s) 93, 251, 338, 430, 697
DraI TTTAAA 1 cut(s) 622
DriI GACNNNNNGTC 1 cut(s) 418
EaeI YGGCCR 1 cut(s) 89
EagI CGGCCG 1 cut(s) 89
Eam1104I CTCTTC 2 cut(s) 294, 726
Eam1105I GACNNNNNGTC 1 cut(s) 418
EarI CTCTTC 2 cut(s) 294, 726
EclXI CGGCCG 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 707
Eco47I GGWCC 4 cut(s) 131, 208, 396, 420
Eco47III AGCGCT 1 cut(s) 229
Eco52I CGGCCG 1 cut(s) 89
Eco72I CACGTG 2 cut(s) 501, 756
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 422
EcoT14I CCWWGG 1 cut(s) 707
ErhI CCWWGG 1 cut(s) 707
FaeI CATG 2 cut(s) 508, 711
FaiI YATR 2 cut(s) 506, 709
FatI CATG 2 cut(s) 504, 707
Fnu4HI GCNGC 5 cut(s) 111, 118, 438, 459, 602
FokI GGATG 6 cut(s) 30, 158, 290, 382, 576, 587
Fsp4HI GCNGC 5 cut(s) 111, 118, 438, 459, 602
FspBI CTAG 4 cut(s) 231, 320, 626, 781
GlaI GCGC 3 cut(s) 23, 229, 605
GluI GCNGC 5 cut(s) 111, 118, 438, 459, 602
HaeII RGCGCY 2 cut(s) 231, 607
HaeIII GGCC 1 cut(s) 91
HapII CCGG 8 cut(s) 9, 50, 88, 107, 129, 302, 418, 641
HgaI GACGC 1 cut(s) 14
HhaI GCGC 3 cut(s) 24, 230, 606
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 2 cut(s) 508, 711
Hin6I GCGC 3 cut(s) 22, 228, 604
HinP1I GCGC 3 cut(s) 22, 228, 604
HindIII AAGCTT 1 cut(s) 685
HinfI GANTC 4 cut(s) 84, 314, 358, 467
HpaII CCGG 8 cut(s) 9, 50, 88, 107, 129, 302, 418, 641
HphI GGTGA 2 cut(s) 47, 487
Hpy188I TCNGA 4 cut(s) 83, 102, 135, 273
Hpy188III TCNNGA 3 cut(s) 50, 202, 403
Hpy99I CGWCG 1 cut(s) 277
HpyAV CCTTC 3 cut(s) 199, 623, 647
HpyCH4III ACNGT 4 cut(s) 157, 248, 481, 543
HpyCH4IV ACGT 3 cut(s) 365, 500, 755
HpyCH4V TGCA 1 cut(s) 504
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 656
HpyF3I CTNAG 3 cut(s) 80, 213, 384
HpySE526I ACGT 3 cut(s) 365, 500, 755
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 2 cut(s) 508, 711
HspAI GCGC 3 cut(s) 22, 228, 604
Kpn2I TCCGGA 1 cut(s) 49
Kzo9I GATC 5 cut(s) 93, 251, 338, 430, 697
LmnI GCTCC 4 cut(s) 52, 103, 632, 647
LweI GCATC 1 cut(s) 288
MaeI CTAG 4 cut(s) 231, 320, 626, 781
MaeII ACGT 3 cut(s) 365, 500, 755
MaeIII GTNAC 3 cut(s) 283, 475, 490
MalI GATC 5 cut(s) 95, 253, 340, 432, 699
MboI GATC 5 cut(s) 93, 251, 338, 430, 697
MboII GAAGA 4 cut(s) 246, 281, 549, 743
MflI RGATCY 2 cut(s) 251, 338
MhlI GDGCHC 2 cut(s) 49, 535
MluCI AATT 1 cut(s) 236
MlyI GAGTC 2 cut(s) 308, 476
MmeI TCCRAC 2 cut(s) 158, 296
MnlI CCTC 9 cut(s) 177, 403, 459, 509, 554, 578, 637, 716, 721
MroI TCCGGA 1 cut(s) 49
MseI TTAA 3 cut(s) 239, 596, 621
MslI CAYNNNNRTG 1 cut(s) 503
MspI CCGG 8 cut(s) 9, 50, 88, 107, 129, 302, 418, 641
MspR9I CCNGG 1 cut(s) 424
MvaI CCWGG 1 cut(s) 424
MvnI CGCG 2 cut(s) 24, 203
MwoI GCNNNNNNNGC 2 cut(s) 30, 656
NcoI CCATGG 1 cut(s) 707
NdeII GATC 5 cut(s) 93, 251, 338, 430, 697
NlaIII CATG 2 cut(s) 508, 711
NlaIV GGNNCC 3 cut(s) 210, 447, 545
NmuCI GTSAC 3 cut(s) 283, 475, 490
NruI TCGCGA 1 cut(s) 203
PfeI GAWTC 2 cut(s) 84, 358
PfoI TCCNGGA 1 cut(s) 422
PkrI GCNGC 5 cut(s) 112, 119, 439, 460, 603
Ple19I CGATCG 1 cut(s) 96
PleI GAGTC 2 cut(s) 308, 475
PmaCI CACGTG 2 cut(s) 501, 756
PmlI CACGTG 2 cut(s) 501, 756
PpsI GAGTC 2 cut(s) 308, 475
Ppu21I YACGTR 3 cut(s) 366, 501, 756
PpuMI RGGWCCY 1 cut(s) 208
PshAI GACNNNNGTC 1 cut(s) 278
PshBI ATTAAT 1 cut(s) 239
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 422
PspCI CACGTG 2 cut(s) 501, 756
PspGI CCWGG 1 cut(s) 422
PspN4I GGNNCC 3 cut(s) 210, 447, 545
PspPI GGNCC 4 cut(s) 131, 208, 396, 420
PspPPI RGGWCCY 1 cut(s) 208
PsuI RGATCY 2 cut(s) 251, 338
PvuI CGATCG 1 cut(s) 96
RruI TCGCGA 1 cut(s) 203
RsaI GTAC 2 cut(s) 191, 513
RsaNI GTAC 2 cut(s) 190, 512
RseI CAYNNNNRTG 1 cut(s) 503
Rsr2I CGGWCCG 1 cut(s) 131
RsrII CGGWCCG 1 cut(s) 131
SaqAI TTAA 3 cut(s) 239, 596, 621
SatI GCNGC 5 cut(s) 111, 118, 438, 459, 602
Sau3AI GATC 5 cut(s) 93, 251, 338, 430, 697
Sau96I GGNCC 4 cut(s) 131, 208, 396, 420
SchI GAGTC 2 cut(s) 308, 476
ScrFI CCNGG 1 cut(s) 424
SduI GDGCHC 2 cut(s) 49, 535
SfaNI GCATC 1 cut(s) 288
SinI GGWCC 4 cut(s) 131, 208, 396, 420
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 769
SmoI CTYRAG 1 cut(s) 769
Sse9I AATT 1 cut(s) 236
SsiI CCGC 9 cut(s) 33, 110, 117, 165, 437, 440, 458, 461, 601
SspMI CTAG 4 cut(s) 231, 320, 626, 781
StyD4I CCNGG 1 cut(s) 422
StyI CCWWGG 1 cut(s) 707
TaaI ACNGT 4 cut(s) 157, 248, 481, 543
TaiI ACGT 3 cut(s) 368, 503, 758
TaqI TCGA 2 cut(s) 535, 696
TasI AATT 1 cut(s) 236
TatI WGTACW 1 cut(s) 189
TauI GCSGC 5 cut(s) 113, 120, 440, 461, 604
TfiI GAWTC 2 cut(s) 84, 358
Tru1I TTAA 3 cut(s) 239, 596, 621
Tru9I TTAA 3 cut(s) 239, 596, 621
TscAI CASTG 3 cut(s) 253, 265, 300
TseFI GTSAC 3 cut(s) 283, 475, 490
Tsp45I GTSAC 3 cut(s) 283, 475, 490
TspDTI ATGAA 2 cut(s) 386, 404
TspGWI ACGGA 2 cut(s) 290, 388
TspRI CASTG 3 cut(s) 253, 265, 300
VpaK11BI GGWCC 4 cut(s) 131, 208, 396, 420
VspI ATTAAT 1 cut(s) 239
XspI CTAG 4 cut(s) 231, 320, 626, 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.