RLG00000022282

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001258
Physical Location & Seq
Reverse (-)
82230330 .. 82234067
3738 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022282

Sequence Viewer

Length: 975 bp
ATGGAAGGAGGTGGAGAAGGGTGGCGCCGTATGATAAGTGGTGCGGAGGATAATTATGTGTTGAATAAGATAATGCTGAGATTCCGGCCGATTGCTCCGAAGCCAGTCACCGGCGGGTCAGGTTCGGGTGAGCCGCCGACGGGTAGGAGTAACGCGCTCGCTTCCAGGGGGAGAACCAAGAGAAAGTACGTTAGGGTTCCTAAGAATGTTAACGGCGAGGAGGAGAGTGGGAGAGAGAGGGTGGACAGTAAACGAGTGGTGACGCTGCAGCTGTTGCCGGAGATCGAGAAGAGCGGCGATTACAGCAGCGACCAATCGACGGACGGCGGATCTAGTTGTGAGTTTGATTCTAGTATCGGCACAAATCATCAGTGGTTGAGTCTTAGTAAGATCGGAAGAGAGAATTACATGAGAGCTGATTCGGCGGCTGATCCGGCGGCGGTGATGGACCAGATGCGAGGAGTGGAGTCGTGGGTCACGGTGGAGTGCGTGACAGGCACATGCATGAAGGCTCCACCTTCTCAAGGGTTTGGAATCATCACTACGGACGAGGAGAGAATGAGGAGTCTGGAGGTTGACACGTGTCCGGGGTTCGTCTCCGACGGTTGGAACAGGGTTCAGTGGCTGAACGGAGCGTTCAGGAGGATGGTGATGATGAAGTGGCAGCAACAGTTGCCGGAGATAGCCGTGTGGTTAGCGATGAACGAAGAGCTGCCGTATACCCACTCGGCGTTTACGTGCCAGGTGAAGCTGAGATACACTGCGGGCAACAAGGAGAAGGAGAAGTACTACTACTCGCAAATGGTGCCTTGTGATTTGTGGAGAATGGACGGCGGAGGATTTGCATGGAGGCTCGACGTTAAAGCTGCGCTCACTCTGGCCGTTGATGCAGCTCCACTACGAATTATAGGTCGAGATGATAAGGTTAATTTCATTTGGACGGAAGAGGCGGCTTCTGAGGATTTGAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

36.26

Weight (kDa)

6.27

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 155 - 292 4.2e-52 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 24, 805
AccBSI CCGCTC 1 cut(s) 294
AccI GTMKAC 1 cut(s) 719
AccII CGCG 1 cut(s) 155
AclWI GGATC 2 cut(s) 337, 425
AcoI YGGCCR 2 cut(s) 86, 879
AcvI CACGTG 1 cut(s) 582
AcyI GRCGYC 1 cut(s) 25
AfaI GTAC 2 cut(s) 188, 788
AfiI CCNNNNNNNGG 5 cut(s) 110, 140, 319, 524, 606
AflIII ACRYGT 2 cut(s) 579, 581
AgsI TTSAA 2 cut(s) 64, 967
AjnI CCWGG 2 cut(s) 164, 741
AluBI AGCT 6 cut(s) 271, 416, 712, 751, 866, 893
AluI AGCT 6 cut(s) 271, 416, 712, 751, 866, 893
Alw26I GTCTC 1 cut(s) 601
AlwI GGATC 2 cut(s) 337, 425
AlwNI CAGNNNCTG 1 cut(s) 625
AoxI GGCC 2 cut(s) 86, 879
ApeKI GCWGC 7 cut(s) 265, 268, 306, 664, 712, 866, 890
ArsI GACNNNNNNTTYG 2 cut(s) 895, 927
AspLEI GCGC 3 cut(s) 27, 157, 871
AspS9I GGNCC 1 cut(s) 448
AsuC2I CCSGG 1 cut(s) 588
AsuHPI GGTGA 6 cut(s) 100, 140, 271, 454, 661, 757
AvaII GGWCC 1 cut(s) 448
BanI GGYRCC 2 cut(s) 24, 805
BarI GAAGNNNNNNTAC 6 cut(s) 740, 770, 772, 776, 802, 808
BbrPI CACGTG 1 cut(s) 582
BbvI GCAGC 7 cut(s) 252, 280, 318, 676, 699, 853, 902
BccI CCATC 2 cut(s) 439, 640
BceAI ACGGC 7 cut(s) 12, 229, 340, 671, 700, 847, 866
BciT130I CCWGG 2 cut(s) 166, 743
BcnI CCSGG 1 cut(s) 588
BcoDI GTCTC 1 cut(s) 601
BfaI CTAG 2 cut(s) 333, 351
BfmI CTRYAG 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 28
BmcAI AGTACT 1 cut(s) 788
Bme1390I CCNGG 3 cut(s) 166, 588, 743
Bme18I GGWCC 1 cut(s) 448
BmgT120I GGNCC 1 cut(s) 448
BmiI GGNNCC 4 cut(s) 26, 198, 513, 807
BmrFI CCNGG 3 cut(s) 166, 588, 743
BmsI GCATC 2 cut(s) 444, 877
BoxI GACNNNNGTC 1 cut(s) 582
BpmI CTGGAG 1 cut(s) 590
BpuEI CTTGAG 1 cut(s) 507
BpuMI CCSGG 1 cut(s) 588
BsaAI YACGTR 2 cut(s) 582, 738
BsaHI GRCGYC 1 cut(s) 25
BsaJI CCNNGG 2 cut(s) 165, 587
Bsc4I CCNNNNNNNGG 5 cut(s) 110, 140, 319, 524, 606
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 104
BseBI CCWGG 2 cut(s) 166, 743
BseDI CCNNGG 2 cut(s) 165, 587
BseGI GGATG 1 cut(s) 651
BseLI CCNNNNNNNGG 5 cut(s) 110, 140, 319, 524, 606
BseMII CTCAG 3 cut(s) 68, 743, 948
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 5 cut(s) 233, 236, 474, 566, 577
BseX3I CGGCCG 1 cut(s) 86
BseXI GCAGC 7 cut(s) 252, 280, 318, 676, 699, 853, 902
Bsh1236I CGCG 1 cut(s) 155
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 88, 881
BshNI GGYRCC 2 cut(s) 24, 805
BsiEI CGRYCG 1 cut(s) 89
BsiSI CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
BslI CCNNNNNNNGG 5 cut(s) 110, 140, 319, 524, 606
BsmAI GTCTC 1 cut(s) 601
BsmBI CGTCTC 1 cut(s) 601
BsnI GGCC 2 cut(s) 88, 881
Bsp143I GATC 4 cut(s) 282, 329, 390, 430
BspANI GGCC 2 cut(s) 88, 881
BspCNI CTCAG 3 cut(s) 69, 744, 949
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 4 cut(s) 26, 198, 513, 807
BspMAI CTGCAG 1 cut(s) 270
BspPI GGATC 2 cut(s) 337, 425
BspQI GCTCTTC 2 cut(s) 284, 702
BspT107I GGYRCC 2 cut(s) 24, 805
BsrBI CCGCTC 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 165, 587
BssMI GATC 4 cut(s) 282, 329, 390, 430
BssNAI GTATAC 1 cut(s) 720
BssNI GRCGYC 1 cut(s) 25
Bst1107I GTATAC 1 cut(s) 720
Bst2UI CCWGG 2 cut(s) 166, 743
Bst4CI ACNGT 4 cut(s) 248, 481, 605, 672
Bst6I CTCTTC 4 cut(s) 284, 391, 702, 939
BstACI GRCGYC 1 cut(s) 25
BstAPI GCANNNNNTGC 3 cut(s) 274, 673, 805
BstBAI YACGTR 2 cut(s) 582, 738
BstC8I GCNNGC 2 cut(s) 159, 766
BstDEI CTNAG 5 cut(s) 77, 201, 383, 752, 957
BstENI CCTNNNNNAGG 1 cut(s) 522
BstF5I GGATG 1 cut(s) 651
BstFNI CGCG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 28
BstHHI GCGC 3 cut(s) 27, 157, 871
BstKTI GATC 4 cut(s) 285, 332, 393, 433
BstMAI GTCTC 1 cut(s) 601
BstMBI GATC 4 cut(s) 282, 329, 390, 430
BstMCI CGRYCG 1 cut(s) 89
BstMWI GCNNNNNNNGC 8 cut(s) 274, 303, 422, 434, 495, 673, 805, 887
BstNI CCWGG 2 cut(s) 166, 743
BstNSI RCATGY 1 cut(s) 504
BstPAI GACNNNNGTC 1 cut(s) 582
BstSCI CCNGG 3 cut(s) 164, 586, 741
BstSFI CTRYAG 1 cut(s) 266
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 7 cut(s) 252, 280, 318, 676, 699, 853, 902
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
BstZ17I GTATAC 1 cut(s) 720
BstZI CGGCCG 1 cut(s) 86
BsuRI GGCC 2 cut(s) 88, 881
BtgZI GCGATG 1 cut(s) 713
BtsCI GGATG 1 cut(s) 651
BtsI GCAGTG 1 cut(s) 759
BtsIMutI CAGTG 3 cut(s) 377, 626, 759
Cac8I GCNNGC 2 cut(s) 159, 766
CaiI CAGNNNCTG 1 cut(s) 625
CfoI GCGC 3 cut(s) 27, 157, 871
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 448
CseI GACGC 1 cut(s) 271
Csp6I GTAC 2 cut(s) 187, 787
CviAII CATG 4 cut(s) 409, 501, 505, 846
CviQI GTAC 2 cut(s) 187, 787
DdeI CTNAG 5 cut(s) 77, 201, 383, 752, 957
DinI GGCGCC 1 cut(s) 26
DpnI GATC 4 cut(s) 284, 331, 392, 432
DpnII GATC 4 cut(s) 282, 329, 390, 430
EaeI YGGCCR 2 cut(s) 86, 879
EagI CGGCCG 1 cut(s) 86
Eam1104I CTCTTC 4 cut(s) 284, 391, 702, 939
EarI CTCTTC 4 cut(s) 284, 391, 702, 939
EciI GGCGGA 2 cut(s) 342, 849
EclXI CGGCCG 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 448
Eco52I CGGCCG 1 cut(s) 86
Eco72I CACGTG 1 cut(s) 582
EcoNI CCTNNNNNAGG 1 cut(s) 522
EcoRII CCWGG 2 cut(s) 164, 741
EcoT22I ATGCAT 1 cut(s) 506
EgeI GGCGCC 1 cut(s) 26
EheI GGCGCC 1 cut(s) 26
Esp3I CGTCTC 1 cut(s) 601
FaeI CATG 4 cut(s) 412, 504, 508, 849
FaiI YATR 8 cut(s) 32, 57, 410, 502, 506, 720, 847, 908
FatI CATG 4 cut(s) 408, 500, 504, 845
FauI CCCGC 2 cut(s) 107, 757
FblI GTMKAC 1 cut(s) 719
FokI GGATG 1 cut(s) 658
FspBI CTAG 2 cut(s) 333, 351
GlaI GCGC 3 cut(s) 26, 156, 870
GsuI CTGGAG 1 cut(s) 590
HaeII RGCGCY 1 cut(s) 28
HaeIII GGCC 2 cut(s) 88, 881
HapII CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
HgaI GACGC 1 cut(s) 271
HhaI GCGC 3 cut(s) 27, 157, 871
Hin1I GRCGYC 1 cut(s) 25
Hin1II CATG 4 cut(s) 412, 504, 508, 849
Hin6I GCGC 3 cut(s) 25, 155, 869
HinP1I GCGC 3 cut(s) 25, 155, 869
HincII GTYRAC 2 cut(s) 211, 577
HindII GTYRAC 2 cut(s) 211, 577
HinfI GANTC 7 cut(s) 81, 347, 379, 419, 467, 534, 565
HpaI GTTAAC 1 cut(s) 211
HpaII CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
HphI GGTGA 6 cut(s) 100, 140, 271, 454, 661, 757
Hpy166II GTNNAC 6 cut(s) 211, 244, 251, 577, 720, 735
Hpy188I TCNGA 4 cut(s) 99, 395, 601, 958
Hpy188III TCNNGA 4 cut(s) 286, 569, 640, 914
Hpy8I GTNNAC 6 cut(s) 211, 244, 251, 577, 720, 735
Hpy99I CGWCG 4 cut(s) 142, 322, 605, 860
HpyAV CCTTC 4 cut(s) 11, 502, 528, 772
HpyCH4III ACNGT 4 cut(s) 248, 481, 605, 672
HpyCH4IV ACGT 4 cut(s) 189, 581, 737, 858
HpyCH4V TGCA 4 cut(s) 268, 504, 845, 890
HpyF10VI GCNNNNNNNGC 8 cut(s) 274, 303, 422, 434, 495, 673, 805, 887
HpyF3I CTNAG 5 cut(s) 77, 201, 383, 752, 957
HpySE526I ACGT 4 cut(s) 189, 581, 737, 858
Hsp92I GRCGYC 1 cut(s) 25
Hsp92II CATG 4 cut(s) 412, 504, 508, 849
HspAI GCGC 3 cut(s) 25, 155, 869
KasI GGCGCC 1 cut(s) 24
KspAI GTTAAC 1 cut(s) 211
Kzo9I GATC 4 cut(s) 282, 329, 390, 430
LguI GCTCTTC 2 cut(s) 284, 702
LmnI GCTCC 4 cut(s) 100, 517, 632, 898
Lsp1109I GCAGC 7 cut(s) 252, 280, 318, 676, 699, 853, 902
LweI GCATC 2 cut(s) 444, 877
MaeI CTAG 2 cut(s) 333, 351
MaeII ACGT 4 cut(s) 189, 581, 737, 858
MaeIII GTNAC 5 cut(s) 106, 149, 259, 475, 490
MalI GATC 4 cut(s) 284, 331, 392, 432
MbiI CCGCTC 1 cut(s) 294
MboI GATC 4 cut(s) 282, 329, 390, 430
MboII GAAGA 4 cut(s) 301, 408, 719, 956
MflI RGATCY 1 cut(s) 329
MluCI AATT 4 cut(s) 52, 403, 903, 928
Mly113I GGCGCC 1 cut(s) 25
MlyI GAGTC 3 cut(s) 388, 476, 574
MmeI TCCRAC 2 cut(s) 587, 624
Mph1103I ATGCAT 1 cut(s) 506
MseI TTAA 3 cut(s) 210, 861, 927
MslI CAYNNNNRTG 1 cut(s) 503
MspA1I CMGCKG 1 cut(s) 271
MspI CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
MspR9I CCNGG 3 cut(s) 166, 588, 743
MvaI CCWGG 2 cut(s) 166, 743
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 8 cut(s) 274, 303, 422, 434, 495, 673, 805, 887
NarI GGCGCC 1 cut(s) 25
NciI CCSGG 1 cut(s) 588
NdeII GATC 4 cut(s) 282, 329, 390, 430
NlaIII CATG 4 cut(s) 412, 504, 508, 849
NlaIV GGNNCC 4 cut(s) 26, 198, 513, 807
NmeAIII GCCGAG 1 cut(s) 707
NmuCI GTSAC 4 cut(s) 106, 259, 475, 490
NsiI ATGCAT 1 cut(s) 506
NspI RCATGY 1 cut(s) 504
PciSI GCTCTTC 2 cut(s) 284, 702
PcsI WCGNNNNNNNCGW 1 cut(s) 734
PfeI GAWTC 4 cut(s) 81, 347, 419, 534
PleI GAGTC 3 cut(s) 387, 475, 573
PluTI GGCGCC 1 cut(s) 28
PmaCI CACGTG 1 cut(s) 582
PmlI CACGTG 1 cut(s) 582
PpsI GAGTC 3 cut(s) 387, 475, 573
Ppu21I YACGTR 2 cut(s) 582, 738
PshAI GACNNNNGTC 1 cut(s) 582
Psp6I CCWGG 2 cut(s) 164, 741
PspCI CACGTG 1 cut(s) 582
PspGI CCWGG 2 cut(s) 164, 741
PspN4I GGNNCC 4 cut(s) 26, 198, 513, 807
PspPI GGNCC 1 cut(s) 448
PstI CTGCAG 1 cut(s) 270
PstNI CAGNNNCTG 1 cut(s) 625
PsuI RGATCY 1 cut(s) 329
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 2 cut(s) 188, 788
RsaNI GTAC 2 cut(s) 187, 787
RseI CAYNNNNRTG 1 cut(s) 503
SapI GCTCTTC 2 cut(s) 284, 702
SaqAI TTAA 3 cut(s) 210, 861, 927
Sau3AI GATC 4 cut(s) 282, 329, 390, 430
Sau96I GGNCC 1 cut(s) 448
ScaI AGTACT 1 cut(s) 788
SchI GAGTC 3 cut(s) 388, 476, 574
ScrFI CCNGG 3 cut(s) 166, 588, 743
SfaNI GCATC 2 cut(s) 444, 877
SfcI CTRYAG 1 cut(s) 266
SfoI GGCGCC 1 cut(s) 26
SgrAI CRCCGGYG 1 cut(s) 110
SinI GGWCC 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 522
SmoI CTYRAG 1 cut(s) 522
Sse9I AATT 4 cut(s) 52, 403, 903, 928
SspDI GGCGCC 1 cut(s) 24
SspMI CTAG 2 cut(s) 333, 351
StyD4I CCNGG 3 cut(s) 164, 586, 741
TaaI ACNGT 4 cut(s) 248, 481, 605, 672
TaiI ACGT 4 cut(s) 192, 584, 740, 861
TaqI TCGA 4 cut(s) 285, 317, 855, 913
TasI AATT 4 cut(s) 52, 403, 903, 928
TatI WGTACW 1 cut(s) 786
TauI GCSGC 5 cut(s) 136, 297, 428, 440, 953
TfiI GAWTC 4 cut(s) 81, 347, 419, 534
Tru1I TTAA 3 cut(s) 210, 861, 927
Tru9I TTAA 3 cut(s) 210, 861, 927
TscAI CASTG 3 cut(s) 377, 626, 766
TseFI GTSAC 4 cut(s) 106, 259, 475, 490
TseI GCWGC 7 cut(s) 265, 268, 306, 664, 712, 866, 890
Tsp45I GTSAC 4 cut(s) 106, 259, 475, 490
TspDTI ATGAA 4 cut(s) 521, 671, 716, 922
TspGWI ACGGA 4 cut(s) 335, 560, 645, 956
TspRI CASTG 3 cut(s) 377, 626, 766
VpaK11BI GGWCC 1 cut(s) 448
XagI CCTNNNNNAGG 1 cut(s) 522
XceI RCATGY 1 cut(s) 504
XmiI GTMKAC 1 cut(s) 719
XspI CTAG 2 cut(s) 333, 351
ZrmI AGTACT 1 cut(s) 788
Zsp2I ATGCAT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.