Rh2AG659800

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001258
Physical Location & Seq
Reverse (-)
87585330 .. 87586238
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG659800.1

Sequence Viewer

Length: 909 bp
ATGGAAGGAGGTGGAGAAGGATGGCGCCGTATGATAAGCGGTGCGCAGGATAAGTATGTGTTGAATCAGATAATGCTGAGATTCCGGCCGATTGCGCCGAAGCCAGTCACCGGAGGGTCAGATTCGGGTGAGCCGCCGACGGTTAGGAGTAACGCGCTCGCTTCCAGGGGGAGAACCAAGAGGAAGTACGTTAGGGTTCGTAAGAATGTTAACGGCGAGGAGGAGAGTGGGAGAGAGAGGGTGGACAGTAAACGAGTGGTGACACTGCAGCTGTTGCCGGAGATCGAGAAGAGCGGCGATTACAGCAGTGACCAATCGACGGACGGCGGATCTGGCTGTGAGTTTGATTCTAGTATCGGCACAAATCATCAGTGGTTGAGTCTTAGTAAGATCGGAAGAGAGAATTACATGAGAGCGGATTCCGCGGCGGATCCGGCGGCGGTGATGGACCAGATGGGAGGAGTGGAGTCGTGGGTGACGCTGGAGTGCGTGACGGGCACATGCATGAAGGCTCCACCTCCTCAGGGGTTGGGAATCAGCACTACGGACGAGGAGAGAATGAGGAGTCTGGATGTTGACACGTGTCCGGGGTTCGTCTCCGACGGTTGGAACAGGGTTTGGTGGCTTAACGGAGCGTTCAGGAGGATGGTGATGATGACGTGGCAGCAACAGTTGCCGGAGATAGCCGTGTGGTTAGCGATGAACGAGGAGCTGCCGTATACCCACTCGGCGTTTACGTGCCAGGTGAAGCTGAGATACACTGTGGGCAACAAGGAGAAGGAGAAGTATTACCACTCGCAAATGGTGCCTTGTGATTTGTGGAGAATGGACGGAGGAGGATTTGCATGGAGGCTCGACGTTAAAGCTGCGCTCACTTTGGCCGTTGATGCAGCTCCACTACATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

302

Amino Acids

33.72

Weight (kDa)

6.46

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 155 - 292 8.8e-51 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 45
AccB1I GGYRCC 2 cut(s) 24, 805
AccBSI CCGCTC 2 cut(s) 294, 416
AccI GTMKAC 1 cut(s) 719
AccII CGCG 2 cut(s) 155, 425
AclWI GGATC 3 cut(s) 337, 425, 438
AcoI YGGCCR 2 cut(s) 86, 879
AcvI CACGTG 1 cut(s) 582
AcyI GRCGYC 1 cut(s) 25
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 4 cut(s) 110, 319, 524, 606
AflIII ACRYGT 2 cut(s) 579, 581
AgsI TTSAA 1 cut(s) 64
AjiI CACGTC 1 cut(s) 660
AjnI CCWGG 2 cut(s) 164, 741
AluBI AGCT 5 cut(s) 271, 712, 751, 866, 893
AluI AGCT 5 cut(s) 271, 712, 751, 866, 893
Alw26I GTCTC 1 cut(s) 601
AlwI GGATC 3 cut(s) 337, 425, 438
AoxI GGCC 2 cut(s) 86, 879
ApeKI GCWGC 5 cut(s) 268, 664, 712, 866, 890
AspLEI GCGC 5 cut(s) 27, 46, 97, 157, 871
AspS9I GGNCC 1 cut(s) 448
AsuC2I CCSGG 1 cut(s) 588
AsuHPI GGTGA 7 cut(s) 100, 140, 271, 454, 487, 661, 757
AvaII GGWCC 1 cut(s) 448
AxyI CCTNAGG 1 cut(s) 522
BaeGI GKGCMC 1 cut(s) 500
BamHI GGATCC 1 cut(s) 430
BanI GGYRCC 2 cut(s) 24, 805
BarI GAAGNNNNNNTAC 2 cut(s) 740, 772
BbrPI CACGTG 1 cut(s) 582
BbvI GCAGC 5 cut(s) 280, 676, 699, 853, 902
BccI CCATC 4 cut(s) 15, 439, 448, 640
BceAI ACGGC 6 cut(s) 12, 229, 340, 671, 700, 866
BciT130I CCWGG 2 cut(s) 166, 743
BcnI CCSGG 1 cut(s) 588
BcoDI GTCTC 1 cut(s) 601
BfaI CTAG 1 cut(s) 351
BfmI CTRYAG 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 28
BisI GCNGC 9 cut(s) 134, 269, 295, 426, 438, 665, 713, 867, 891
BlsI GCNGC 9 cut(s) 135, 270, 296, 427, 439, 666, 714, 868, 892
Bme1390I CCNGG 3 cut(s) 166, 588, 743
Bme18I GGWCC 1 cut(s) 448
BmgBI CACGTC 1 cut(s) 660
BmgT120I GGNCC 1 cut(s) 448
BmiI GGNNCC 4 cut(s) 26, 432, 513, 807
BmrFI CCNGG 3 cut(s) 166, 588, 743
BmsI GCATC 1 cut(s) 877
BoxI GACNNNNGTC 1 cut(s) 582
BpmI CTGGAG 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 588
BsaAI YACGTR 2 cut(s) 582, 738
BsaHI GRCGYC 1 cut(s) 25
BsaJI CCNNGG 3 cut(s) 165, 423, 587
BsaWI WCCGGW 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 701, 731
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 319, 524, 606
Bse1I ACTGG 1 cut(s) 104
Bse21I CCTNAGG 1 cut(s) 522
BseBI CCWGG 2 cut(s) 166, 743
BseDI CCNNGG 3 cut(s) 165, 423, 587
BseGI GGATG 3 cut(s) 26, 577, 651
BseLI CCNNNNNNNGG 4 cut(s) 110, 319, 524, 606
BseMII CTCAG 3 cut(s) 68, 536, 743
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 8 cut(s) 233, 236, 474, 510, 566, 577, 722, 849
BseSI GKGCMC 1 cut(s) 500
BseX3I CGGCCG 1 cut(s) 86
BseXI GCAGC 5 cut(s) 280, 676, 699, 853, 902
Bsh1236I CGCG 2 cut(s) 155, 425
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 88, 881
BshNI GGYRCC 2 cut(s) 24, 805
BsiEI CGRYCG 1 cut(s) 89
BsiSI CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
BslI CCNNNNNNNGG 4 cut(s) 110, 319, 524, 606
BsmAI GTCTC 1 cut(s) 601
BsmBI CGTCTC 1 cut(s) 601
BsnI GGCC 2 cut(s) 88, 881
Bsp1286I GDGCHC 1 cut(s) 500
Bsp143I GATC 4 cut(s) 282, 329, 390, 430
BspANI GGCC 2 cut(s) 88, 881
BspCNI CTCAG 3 cut(s) 69, 535, 744
BspFNI CGCG 2 cut(s) 155, 425
BspLI GGNNCC 4 cut(s) 26, 432, 513, 807
BspMAI CTGCAG 1 cut(s) 270
BspPI GGATC 3 cut(s) 337, 425, 438
BspQI GCTCTTC 1 cut(s) 284
BspT107I GGYRCC 2 cut(s) 24, 805
BsrBI CCGCTC 2 cut(s) 294, 416
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 3 cut(s) 165, 423, 587
BssMI GATC 4 cut(s) 282, 329, 390, 430
BssNAI GTATAC 1 cut(s) 720
BssNI GRCGYC 1 cut(s) 25
Bst1107I GTATAC 1 cut(s) 720
Bst2UI CCWGG 2 cut(s) 166, 743
Bst4CI ACNGT 5 cut(s) 142, 248, 605, 672, 763
Bst6I CTCTTC 2 cut(s) 284, 391
BstACI GRCGYC 1 cut(s) 25
BstAPI GCANNNNNTGC 3 cut(s) 274, 673, 805
BstBAI YACGTR 2 cut(s) 582, 738
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 4 cut(s) 77, 383, 522, 752
BstDSI CCRYGG 1 cut(s) 423
BstF5I GGATG 3 cut(s) 26, 577, 651
BstFNI CGCG 2 cut(s) 155, 425
BstH2I RGCGCY 1 cut(s) 28
BstHHI GCGC 5 cut(s) 27, 46, 97, 157, 871
BstKTI GATC 4 cut(s) 285, 332, 393, 433
BstMAI GTCTC 1 cut(s) 601
BstMBI GATC 4 cut(s) 282, 329, 390, 430
BstMCI CGRYCG 1 cut(s) 89
BstNI CCWGG 2 cut(s) 166, 743
BstNSI RCATGY 1 cut(s) 504
BstPAI GACNNNNGTC 1 cut(s) 582
BstSCI CCNGG 3 cut(s) 164, 586, 741
BstSFI CTRYAG 1 cut(s) 266
BstSLI GKGCMC 1 cut(s) 500
BstUI CGCG 2 cut(s) 155, 425
BstV1I GCAGC 5 cut(s) 280, 676, 699, 853, 902
BstX2I RGATCY 2 cut(s) 329, 430
BstYI RGATCY 2 cut(s) 329, 430
BstZ17I GTATAC 1 cut(s) 720
BstZI CGGCCG 1 cut(s) 86
Bsu36I CCTNAGG 1 cut(s) 522
BsuRI GGCC 2 cut(s) 88, 881
BtgI CCRYGG 1 cut(s) 423
BtgZI GCGATG 1 cut(s) 713
BtrI CACGTC 1 cut(s) 660
BtsCI GGATG 3 cut(s) 26, 577, 651
BtsI GCAGTG 2 cut(s) 263, 313
BtsIMutI CAGTG 4 cut(s) 263, 313, 377, 759
Cac8I GCNNGC 1 cut(s) 159
CfoI GCGC 5 cut(s) 27, 46, 97, 157, 871
Cfr13I GGNCC 1 cut(s) 448
Cfr42I CCGCGG 1 cut(s) 426
CseI GACGC 1 cut(s) 487
Csp6I GTAC 1 cut(s) 187
CviAII CATG 4 cut(s) 409, 501, 505, 846
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 4 cut(s) 77, 383, 522, 752
DinI GGCGCC 1 cut(s) 26
DpnI GATC 4 cut(s) 284, 331, 392, 432
DpnII GATC 4 cut(s) 282, 329, 390, 430
EaeI YGGCCR 2 cut(s) 86, 879
EagI CGGCCG 1 cut(s) 86
Eam1104I CTCTTC 2 cut(s) 284, 391
EarI CTCTTC 2 cut(s) 284, 391
EciI GGCGGA 2 cut(s) 342, 443
EclXI CGGCCG 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 448
Eco52I CGGCCG 1 cut(s) 86
Eco72I CACGTG 1 cut(s) 582
Eco81I CCTNAGG 1 cut(s) 522
EcoRII CCWGG 2 cut(s) 164, 741
EcoT22I ATGCAT 1 cut(s) 506
EgeI GGCGCC 1 cut(s) 26
EheI GGCGCC 1 cut(s) 26
Esp3I CGTCTC 1 cut(s) 601
FaeI CATG 4 cut(s) 412, 504, 508, 849
FaiI YATR 8 cut(s) 32, 57, 410, 502, 506, 720, 847, 903
FatI CATG 4 cut(s) 408, 500, 504, 845
FblI GTMKAC 1 cut(s) 719
Fnu4HI GCNGC 9 cut(s) 134, 269, 295, 426, 438, 665, 713, 867, 891
FokI GGATG 3 cut(s) 33, 584, 658
Fsp4HI GCNGC 9 cut(s) 134, 269, 295, 426, 438, 665, 713, 867, 891
FspBI CTAG 1 cut(s) 351
FspI TGCGCA 1 cut(s) 45
GlaI GCGC 5 cut(s) 26, 45, 96, 156, 870
GluI GCNGC 9 cut(s) 134, 269, 295, 426, 438, 665, 713, 867, 891
GsuI CTGGAG 1 cut(s) 503
HaeII RGCGCY 1 cut(s) 28
HaeIII GGCC 2 cut(s) 88, 881
HapII CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
HgaI GACGC 1 cut(s) 487
HhaI GCGC 5 cut(s) 27, 46, 97, 157, 871
Hin1I GRCGYC 1 cut(s) 25
Hin1II CATG 4 cut(s) 412, 504, 508, 849
Hin6I GCGC 5 cut(s) 25, 44, 95, 155, 869
HinP1I GCGC 5 cut(s) 25, 44, 95, 155, 869
HincII GTYRAC 2 cut(s) 211, 577
HindII GTYRAC 2 cut(s) 211, 577
HinfI GANTC 9 cut(s) 64, 81, 122, 347, 379, 419, 467, 534, 565
HpaI GTTAAC 1 cut(s) 211
HpaII CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
HphI GGTGA 7 cut(s) 100, 140, 271, 454, 487, 661, 757
Hpy166II GTNNAC 6 cut(s) 211, 244, 251, 577, 720, 735
Hpy188I TCNGA 4 cut(s) 69, 121, 395, 601
Hpy188III TCNNGA 3 cut(s) 286, 569, 640
Hpy8I GTNNAC 6 cut(s) 211, 244, 251, 577, 720, 735
Hpy99I CGWCG 4 cut(s) 142, 322, 605, 860
HpyAV CCTTC 3 cut(s) 11, 502, 772
HpyCH4III ACNGT 5 cut(s) 142, 248, 605, 672, 763
HpyCH4IV ACGT 5 cut(s) 189, 581, 659, 737, 858
HpyCH4V TGCA 4 cut(s) 268, 504, 845, 890
HpyF3I CTNAG 4 cut(s) 77, 383, 522, 752
HpySE526I ACGT 5 cut(s) 189, 581, 659, 737, 858
Hsp92I GRCGYC 1 cut(s) 25
Hsp92II CATG 4 cut(s) 412, 504, 508, 849
HspAI GCGC 5 cut(s) 25, 44, 95, 155, 869
KasI GGCGCC 1 cut(s) 24
KspAI GTTAAC 1 cut(s) 211
KspI CCGCGG 1 cut(s) 426
Kzo9I GATC 4 cut(s) 282, 329, 390, 430
LguI GCTCTTC 1 cut(s) 284
LmnI GCTCC 4 cut(s) 517, 632, 709, 898
Lsp1109I GCAGC 5 cut(s) 280, 676, 699, 853, 902
LweI GCATC 1 cut(s) 877
MaeI CTAG 1 cut(s) 351
MaeII ACGT 5 cut(s) 189, 581, 659, 737, 858
MaeIII GTNAC 6 cut(s) 106, 149, 259, 308, 475, 490
MalI GATC 4 cut(s) 284, 331, 392, 432
MbiI CCGCTC 2 cut(s) 294, 416
MboI GATC 4 cut(s) 282, 329, 390, 430
MboII GAAGA 2 cut(s) 301, 408
MflI RGATCY 2 cut(s) 329, 430
MhlI GDGCHC 1 cut(s) 500
MluCI AATT 1 cut(s) 403
Mly113I GGCGCC 1 cut(s) 25
MlyI GAGTC 3 cut(s) 388, 476, 574
MmeI TCCRAC 2 cut(s) 587, 624
Mph1103I ATGCAT 1 cut(s) 506
MseI TTAA 4 cut(s) 210, 627, 861, 907
MslI CAYNNNNRTG 1 cut(s) 503
MspA1I CMGCKG 2 cut(s) 271, 425
MspI CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
MspR9I CCNGG 3 cut(s) 166, 588, 743
MvaI CCWGG 2 cut(s) 166, 743
MvnI CGCG 2 cut(s) 155, 425
NarI GGCGCC 1 cut(s) 25
NciI CCSGG 1 cut(s) 588
NdeII GATC 4 cut(s) 282, 329, 390, 430
NlaIII CATG 4 cut(s) 412, 504, 508, 849
NlaIV GGNNCC 4 cut(s) 26, 432, 513, 807
NmeAIII GCCGAG 1 cut(s) 707
NmuCI GTSAC 5 cut(s) 106, 259, 308, 475, 490
NsbI TGCGCA 1 cut(s) 45
NsiI ATGCAT 1 cut(s) 506
NspI RCATGY 1 cut(s) 504
PciSI GCTCTTC 1 cut(s) 284
PcsI WCGNNNNNNNCGW 1 cut(s) 734
PfeI GAWTC 6 cut(s) 64, 81, 122, 347, 419, 534
PkrI GCNGC 9 cut(s) 135, 270, 296, 427, 439, 666, 714, 868, 892
PleI GAGTC 3 cut(s) 387, 475, 573
PluTI GGCGCC 1 cut(s) 28
PmaCI CACGTG 1 cut(s) 582
PmlI CACGTG 1 cut(s) 582
PpsI GAGTC 3 cut(s) 387, 475, 573
Ppu21I YACGTR 2 cut(s) 582, 738
PshAI GACNNNNGTC 1 cut(s) 582
Psp6I CCWGG 2 cut(s) 164, 741
PspCI CACGTG 1 cut(s) 582
PspGI CCWGG 2 cut(s) 164, 741
PspN4I GGNNCC 4 cut(s) 26, 432, 513, 807
PspPI GGNCC 1 cut(s) 448
PstI CTGCAG 1 cut(s) 270
PsuI RGATCY 2 cut(s) 329, 430
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 503
SacII CCGCGG 1 cut(s) 426
SapI GCTCTTC 1 cut(s) 284
SaqAI TTAA 4 cut(s) 210, 627, 861, 907
SatI GCNGC 9 cut(s) 134, 269, 295, 426, 438, 665, 713, 867, 891
Sau3AI GATC 4 cut(s) 282, 329, 390, 430
Sau96I GGNCC 1 cut(s) 448
SchI GAGTC 3 cut(s) 388, 476, 574
ScrFI CCNGG 3 cut(s) 166, 588, 743
SduI GDGCHC 1 cut(s) 500
SfaNI GCATC 1 cut(s) 877
SfcI CTRYAG 1 cut(s) 266
SfoI GGCGCC 1 cut(s) 26
Sfr303I CCGCGG 1 cut(s) 426
SgrBI CCGCGG 1 cut(s) 426
SinI GGWCC 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 503
Sse9I AATT 1 cut(s) 403
SspDI GGCGCC 1 cut(s) 24
SspMI CTAG 1 cut(s) 351
StyD4I CCNGG 3 cut(s) 164, 586, 741
TaaI ACNGT 5 cut(s) 142, 248, 605, 672, 763
TaiI ACGT 5 cut(s) 192, 584, 662, 740, 861
TaqI TCGA 3 cut(s) 285, 317, 855
TasI AATT 1 cut(s) 403
TauI GCSGC 4 cut(s) 136, 297, 428, 440
TfiI GAWTC 6 cut(s) 64, 81, 122, 347, 419, 534
Tru1I TTAA 4 cut(s) 210, 627, 861, 907
Tru9I TTAA 4 cut(s) 210, 627, 861, 907
TscAI CASTG 4 cut(s) 270, 313, 377, 766
TseFI GTSAC 5 cut(s) 106, 259, 308, 475, 490
TseI GCWGC 5 cut(s) 268, 664, 712, 866, 890
Tsp45I GTSAC 5 cut(s) 106, 259, 308, 475, 490
TspDTI ATGAA 2 cut(s) 521, 716
TspGWI ACGGA 4 cut(s) 335, 560, 645, 846
TspRI CASTG 4 cut(s) 270, 313, 377, 766
VpaK11BI GGWCC 1 cut(s) 448
XceI RCATGY 1 cut(s) 504
XmiI GTMKAC 1 cut(s) 719
XspI CTAG 1 cut(s) 351
Zsp2I ATGCAT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.