FvH4_6g52960

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001258
Physical Location & Seq
Reverse (-)
38882203 .. 38889986
7784 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52960.t4

Sequence Viewer

Length: 999 bp
ATGATTATCGCTTCAGCAACCGGAGAGAGACCAGAGAGAGAACCAGAGAGAGAGAGAGAGAGGGAGAAAGCCGGAGATCAGAGAGATCGTCGGGAGAGGAAGCTGAAGAAGGTGATGGACGGCGGAGATGGATGGCACGTGGCAGCCGGCGGTGTAGGACCGCAAGACAAAACGATAATCAACCGGATAATGCTCAGATTCCGTCCAATCGCACCCAAACCGGTCCCCGGAGGTTCCTCTTCAGGTGAGAGTCTCCCGGAGAGTACGAACAGAAGCTCGTACTCTCCGTGTAAGAGAGCCAAGAGGAAGTACATTCGTAACAAGAAAAGTAACAGATCTTCCACCGGACTGACCGGAGATCCACAAGAACCTATCATCATAGACTCGACCGCCATCACTCTCCAGCTGTTGCCCGTAGAAACAGCCTCCGGCGACATATCCGGTGCTAGATCTTGGTTAAGTCTTGACCGGGCGGTAGAGGAAACCGCACACCTAACTTCTTCTTGGGTGAACGCGAGGCCCTTCAACGGCTGGGATGCGGCGGCGGGATCTGAACGGAGCATGGCGGTGGCAGCGGCGCCGGCGCCGGTGGTGGTTGTGGAGTCGCGGGTGACGGTGGAAAGCGTGACGGACACGTGCATGGATGTGCGAGGGTTAGGTTGTACGGACGAGGAGAAAGTGAGGAGTTTGGAGAGGGACACGTGTCCGGGGTTTATATCAGACGGTTTTAACAGAGTTGAGTGGGTGAACGAGGCCTATAAAGAAATGGTGAGTAGGCAAGGGCAGCATCAGTTACCGGAGGTGAGGGTTTGGCTGGTGACGAAGGCGGAGTTGCCGGGAAAGGGGAACCCGGCGTTCAGTTGCAGGGTGAGGCTGCAGCACAGTGGGGAAAAGGAGAAGTGTTCGAAAATGGTGCCGTGTGATGTGTGGAGGTTGGAGGAGGGTGGTGGGTTGGCTTGGAGGCTGGACATGAAGGCTGCGCTAAGTTTGGGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

333

Amino Acids

36.52

Weight (kDa)

8.8

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 200 - 329 1e-57 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 577, 583, 913
AccII CGCG 2 cut(s) 515, 607
AclWI GGATC 2 cut(s) 353, 556
AcuI CTGAAG 2 cut(s) 125, 225
AcvI CACGTG 3 cut(s) 139, 636, 702
AcyI GRCGYC 2 cut(s) 578, 584
AfaI GTAC 4 cut(s) 265, 281, 311, 664
AfiI CCNNNNNNNGG 3 cut(s) 227, 527, 842
AflIII ACRYGT 3 cut(s) 633, 699, 701
AgeI ACCGGT 1 cut(s) 220
AgsI TTSAA 1 cut(s) 526
AluBI AGCT 3 cut(s) 103, 276, 406
AluI AGCT 3 cut(s) 103, 276, 406
Alw26I GTCTC 2 cut(s) 22, 257
AlwI GGATC 2 cut(s) 353, 556
AoxI GGCC 2 cut(s) 518, 753
ApeKI GCWGC 6 cut(s) 143, 572, 784, 874, 877, 977
AsiGI ACCGGT 1 cut(s) 220
AspLEI GCGC 3 cut(s) 580, 586, 982
AspS9I GGNCC 3 cut(s) 158, 223, 519
AsuC2I CCSGG 6 cut(s) 228, 257, 470, 708, 837, 851
AsuHPI GGTGA 9 cut(s) 124, 257, 520, 622, 757, 781, 814, 829, 880
AsuII TTCGAA 1 cut(s) 905
AvaII GGWCC 2 cut(s) 158, 223
BanI GGYRCC 3 cut(s) 577, 583, 913
BarI GAAGNNNNNNTAC 2 cut(s) 322, 354
BbrPI CACGTG 3 cut(s) 139, 636, 702
BbvI GCAGC 6 cut(s) 155, 584, 796, 861, 889, 964
BccI CCATC 4 cut(s) 109, 122, 126, 401
BceAI ACGGC 3 cut(s) 136, 544, 901
BcgI CGANNNNNNTGC 2 cut(s) 895, 929
BcnI CCSGG 6 cut(s) 228, 257, 470, 708, 837, 851
BcoDI GTCTC 2 cut(s) 22, 257
BfaI CTAG 1 cut(s) 447
BfmI CTRYAG 1 cut(s) 875
BfoI RGCGCY 2 cut(s) 581, 587
BglII AGATCT 2 cut(s) 335, 449
BisI GCNGC 9 cut(s) 144, 540, 543, 573, 576, 785, 875, 878, 978
BlsI GCNGC 9 cut(s) 145, 541, 544, 574, 577, 786, 876, 879, 979
Bme1390I CCNGG 6 cut(s) 228, 257, 470, 708, 837, 851
Bme18I GGWCC 2 cut(s) 158, 223
BmgT120I GGNCC 3 cut(s) 158, 223, 519
BmiI GGNNCC 6 cut(s) 225, 235, 579, 585, 848, 915
BmrFI CCNGG 6 cut(s) 228, 257, 470, 708, 837, 851
BmsI GCATC 2 cut(s) 526, 796
BoxI GACNNNNGTC 1 cut(s) 702
BpmI CTGGAG 1 cut(s) 386
Bpu14I TTCGAA 1 cut(s) 905
BpuMI CCSGG 6 cut(s) 228, 257, 470, 708, 837, 851
BsaAI YACGTR 3 cut(s) 139, 636, 702
BsaHI GRCGYC 2 cut(s) 578, 584
BsaI GGTCTC 1 cut(s) 22
BsaJI CCNNGG 2 cut(s) 226, 707
BsaWI WCCGGW 7 cut(s) 20, 183, 220, 344, 353, 440, 796
Bsc4I CCNNNNNNNGG 3 cut(s) 227, 527, 842
Bse118I RCCGGY 4 cut(s) 146, 220, 580, 586
BseDI CCNNGG 2 cut(s) 226, 707
BseGI GGATG 3 cut(s) 137, 541, 649
BseLI CCNNNNNNNGG 3 cut(s) 227, 527, 842
BseMII CTCAG 1 cut(s) 208
BseRI GAGGAG 3 cut(s) 686, 697, 953
BseXI GCAGC 6 cut(s) 155, 584, 796, 861, 889, 964
BseYI CCCAGC 1 cut(s) 531
Bsh1236I CGCG 2 cut(s) 515, 607
Bsh1285I CGRYCG 1 cut(s) 390
BshFI GGCC 2 cut(s) 520, 755
BshNI GGYRCC 3 cut(s) 577, 583, 913
BshTI ACCGGT 1 cut(s) 220
BsiEI CGRYCG 1 cut(s) 390
BslFI GGGAC 2 cut(s) 209, 710
BslI CCNNNNNNNGG 3 cut(s) 227, 527, 842
BsmAI GTCTC 2 cut(s) 22, 257
BsmFI GGGAC 2 cut(s) 209, 710
BsnI GGCC 2 cut(s) 520, 755
Bso31I GGTCTC 1 cut(s) 22
Bsp119I TTCGAA 1 cut(s) 905
Bsp143I GATC 6 cut(s) 76, 85, 335, 358, 449, 548
BspANI GGCC 2 cut(s) 520, 755
BspCNI CTCAG 1 cut(s) 207
BspFNI CGCG 2 cut(s) 515, 607
BspLI GGNNCC 6 cut(s) 225, 235, 579, 585, 848, 915
BspMAI CTGCAG 1 cut(s) 879
BspPI GGATC 2 cut(s) 353, 556
BspT104I TTCGAA 1 cut(s) 905
BspT107I GGYRCC 3 cut(s) 577, 583, 913
BspTNI GGTCTC 1 cut(s) 22
BsrFI RCCGGY 4 cut(s) 146, 220, 580, 586
BssAI RCCGGY 4 cut(s) 146, 220, 580, 586
BssECI CCNNGG 2 cut(s) 226, 707
BssMI GATC 6 cut(s) 76, 85, 335, 358, 449, 548
BssNI GRCGYC 2 cut(s) 578, 584
Bst4CI ACNGT 3 cut(s) 616, 725, 884
Bst6I CTCTTC 1 cut(s) 244
BstACI GRCGYC 2 cut(s) 578, 584
BstBAI YACGTR 3 cut(s) 139, 636, 702
BstBI TTCGAA 1 cut(s) 905
BstC8I GCNNGC 2 cut(s) 148, 582
BstDEI CTNAG 2 cut(s) 194, 983
BstF5I GGATG 3 cut(s) 137, 541, 649
BstFNI CGCG 2 cut(s) 515, 607
BstH2I RGCGCY 2 cut(s) 581, 587
BstHHI GCGC 3 cut(s) 580, 586, 982
BstKTI GATC 6 cut(s) 79, 88, 338, 361, 452, 551
BstMAI GTCTC 2 cut(s) 22, 257
BstMBI GATC 6 cut(s) 76, 85, 335, 358, 449, 548
BstMCI CGRYCG 1 cut(s) 390
BstMWI GCNNNNNNNGC 3 cut(s) 572, 581, 784
BstPAI GACNNNNGTC 1 cut(s) 702
BstSCI CCNGG 6 cut(s) 226, 255, 468, 706, 835, 849
BstSFI CTRYAG 1 cut(s) 875
BstUI CGCG 2 cut(s) 515, 607
BstV1I GCAGC 6 cut(s) 155, 584, 796, 861, 889, 964
BstX2I RGATCY 4 cut(s) 335, 358, 449, 548
BstYI RGATCY 4 cut(s) 335, 358, 449, 548
BsuRI GGCC 2 cut(s) 520, 755
BtsCI GGATG 3 cut(s) 137, 541, 649
BtsIMutI CAGTG 1 cut(s) 889
Cac8I GCNNGC 2 cut(s) 148, 582
CfoI GCGC 3 cut(s) 580, 586, 982
Cfr10I RCCGGY 4 cut(s) 146, 220, 580, 586
Cfr13I GGNCC 3 cut(s) 158, 223, 519
Csp6I GTAC 4 cut(s) 264, 280, 310, 663
CspAI ACCGGT 1 cut(s) 220
CviAII CATG 3 cut(s) 562, 640, 970
CviQI GTAC 4 cut(s) 264, 280, 310, 663
DdeI CTNAG 2 cut(s) 194, 983
DinI GGCGCC 2 cut(s) 579, 585
DpnI GATC 6 cut(s) 78, 87, 337, 360, 451, 550
DpnII GATC 6 cut(s) 76, 85, 335, 358, 449, 548
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
EciI GGCGGA 2 cut(s) 138, 842
Eco147I AGGCCT 1 cut(s) 755
Eco31I GGTCTC 1 cut(s) 22
Eco47I GGWCC 2 cut(s) 158, 223
Eco57I CTGAAG 2 cut(s) 125, 225
Eco72I CACGTG 3 cut(s) 139, 636, 702
EcoO109I RGGNCCY 1 cut(s) 519
EgeI GGCGCC 2 cut(s) 579, 585
EheI GGCGCC 2 cut(s) 579, 585
FaeI CATG 3 cut(s) 565, 643, 973
FaiI YATR 7 cut(s) 380, 437, 563, 641, 716, 759, 971
FaqI GGGAC 2 cut(s) 209, 710
FatI CATG 3 cut(s) 561, 639, 969
FauI CCCGC 2 cut(s) 538, 600
Fnu4HI GCNGC 9 cut(s) 144, 540, 543, 573, 576, 785, 875, 878, 978
FokI GGATG 3 cut(s) 144, 548, 656
Fsp4HI GCNGC 9 cut(s) 144, 540, 543, 573, 576, 785, 875, 878, 978
FspBI CTAG 1 cut(s) 447
GlaI GCGC 3 cut(s) 579, 585, 981
GluI GCNGC 9 cut(s) 144, 540, 543, 573, 576, 785, 875, 878, 978
GsaI CCCAGC 1 cut(s) 535
GsuI CTGGAG 1 cut(s) 386
HaeII RGCGCY 2 cut(s) 581, 587
HaeIII GGCC 2 cut(s) 520, 755
HhaI GCGC 3 cut(s) 580, 586, 982
Hin1I GRCGYC 2 cut(s) 578, 584
Hin1II CATG 3 cut(s) 565, 643, 973
Hin6I GCGC 3 cut(s) 578, 584, 980
HinP1I GCGC 3 cut(s) 578, 584, 980
HinfI GANTC 4 cut(s) 198, 250, 383, 602
HphI GGTGA 9 cut(s) 124, 257, 520, 622, 757, 781, 814, 829, 880
Hpy166II GTNNAC 2 cut(s) 511, 748
Hpy188I TCNGA 4 cut(s) 81, 197, 553, 721
Hpy188III TCNNGA 2 cut(s) 92, 464
Hpy8I GTNNAC 2 cut(s) 511, 748
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 4 cut(s) 103, 532, 817, 967
HpyCH4III ACNGT 3 cut(s) 616, 725, 884
HpyCH4IV ACGT 3 cut(s) 138, 635, 701
HpyCH4V TGCA 3 cut(s) 639, 864, 877
HpyF10VI GCNNNNNNNGC 3 cut(s) 572, 581, 784
HpyF3I CTNAG 2 cut(s) 194, 983
HpySE526I ACGT 3 cut(s) 138, 635, 701
Hsp92I GRCGYC 2 cut(s) 578, 584
Hsp92II CATG 3 cut(s) 565, 643, 973
HspAI GCGC 3 cut(s) 578, 584, 980
KasI GGCGCC 2 cut(s) 577, 583
KroI GCCGGC 2 cut(s) 146, 580
KroNI GCCGGC 2 cut(s) 148, 582
Kzo9I GATC 6 cut(s) 76, 85, 335, 358, 449, 548
LmnI GCTCC 1 cut(s) 558
Lsp1109I GCAGC 6 cut(s) 155, 584, 796, 861, 889, 964
LweI GCATC 2 cut(s) 526, 796
MaeI CTAG 1 cut(s) 447
MaeII ACGT 3 cut(s) 138, 635, 701
MaeIII GTNAC 6 cut(s) 317, 329, 610, 625, 792, 817
MalI GATC 6 cut(s) 78, 87, 337, 360, 451, 550
MboI GATC 6 cut(s) 76, 85, 335, 358, 449, 548
MboII GAAGA 4 cut(s) 118, 231, 330, 492
MflI RGATCY 4 cut(s) 335, 358, 449, 548
Mly113I GGCGCC 2 cut(s) 578, 584
MlyI GAGTC 3 cut(s) 259, 377, 611
MmeI TCCRAC 1 cut(s) 915
MreI CGCCGGCG 1 cut(s) 580
MroNI GCCGGC 2 cut(s) 146, 580
MseI TTAA 3 cut(s) 458, 729, 997
MslI CAYNNNNRTG 3 cut(s) 566, 638, 644
MspA1I CMGCKG 2 cut(s) 406, 575
MspR9I CCNGG 6 cut(s) 228, 257, 470, 708, 837, 851
MvnI CGCG 2 cut(s) 515, 607
MwoI GCNNNNNNNGC 3 cut(s) 572, 581, 784
NaeI GCCGGC 2 cut(s) 148, 582
NarI GGCGCC 2 cut(s) 578, 584
NciI CCSGG 6 cut(s) 228, 257, 470, 708, 837, 851
NdeII GATC 6 cut(s) 76, 85, 335, 358, 449, 548
NgoMIV GCCGGC 2 cut(s) 146, 580
NlaIII CATG 3 cut(s) 565, 643, 973
NlaIV GGNNCC 6 cut(s) 225, 235, 579, 585, 848, 915
NmuCI GTSAC 3 cut(s) 610, 625, 817
NspV TTCGAA 1 cut(s) 905
PceI AGGCCT 1 cut(s) 755
PcsI WCGNNNNNNNCGW 1 cut(s) 284
PdiI GCCGGC 2 cut(s) 148, 582
PfeI GAWTC 1 cut(s) 198
PfoI TCCNGGA 1 cut(s) 255
PinAI ACCGGT 1 cut(s) 220
PkrI GCNGC 9 cut(s) 145, 541, 544, 574, 577, 786, 876, 879, 979
PleI GAGTC 3 cut(s) 258, 377, 610
PluTI GGCGCC 2 cut(s) 581, 587
PmaCI CACGTG 3 cut(s) 139, 636, 702
PmlI CACGTG 3 cut(s) 139, 636, 702
PpsI GAGTC 3 cut(s) 258, 377, 610
Ppu21I YACGTR 3 cut(s) 139, 636, 702
PshAI GACNNNNGTC 1 cut(s) 702
PspCI CACGTG 3 cut(s) 139, 636, 702
PspFI CCCAGC 1 cut(s) 531
PspN4I GGNNCC 6 cut(s) 225, 235, 579, 585, 848, 915
PspPI GGNCC 3 cut(s) 158, 223, 519
PstI CTGCAG 1 cut(s) 879
PsuI RGATCY 4 cut(s) 335, 358, 449, 548
PvuII CAGCTG 1 cut(s) 406
RsaI GTAC 4 cut(s) 265, 281, 311, 664
RsaNI GTAC 4 cut(s) 264, 280, 310, 663
RseI CAYNNNNRTG 3 cut(s) 566, 638, 644
SaqAI TTAA 3 cut(s) 458, 729, 997
SatI GCNGC 9 cut(s) 144, 540, 543, 573, 576, 785, 875, 878, 978
Sau3AI GATC 6 cut(s) 76, 85, 335, 358, 449, 548
Sau96I GGNCC 3 cut(s) 158, 223, 519
SchI GAGTC 3 cut(s) 259, 377, 611
ScrFI CCNGG 6 cut(s) 228, 257, 470, 708, 837, 851
SfaNI GCATC 2 cut(s) 526, 796
SfcI CTRYAG 1 cut(s) 875
SfoI GGCGCC 2 cut(s) 579, 585
SfuI TTCGAA 1 cut(s) 905
SgrAI CRCCGGYG 2 cut(s) 580, 586
SinI GGWCC 2 cut(s) 158, 223
SmiMI CAYNNNNRTG 3 cut(s) 566, 638, 644
SseBI AGGCCT 1 cut(s) 755
SspDI GGCGCC 2 cut(s) 577, 583
SspMI CTAG 1 cut(s) 447
StuI AGGCCT 1 cut(s) 755
StyD4I CCNGG 6 cut(s) 226, 255, 468, 706, 835, 849
TaaI ACNGT 3 cut(s) 616, 725, 884
TaiI ACGT 3 cut(s) 141, 638, 704
TaqI TCGA 2 cut(s) 386, 905
TatI WGTACW 1 cut(s) 309
TauI GCSGC 3 cut(s) 542, 545, 578
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 3 cut(s) 458, 729, 997
Tru9I TTAA 3 cut(s) 458, 729, 997
TscAI CASTG 1 cut(s) 889
TseFI GTSAC 3 cut(s) 610, 625, 817
TseI GCWGC 6 cut(s) 143, 572, 784, 874, 877, 977
Tsp45I GTSAC 3 cut(s) 610, 625, 817
TspDTI ATGAA 1 cut(s) 986
TspGWI ACGGA 5 cut(s) 191, 276, 571, 644, 680
TspRI CASTG 1 cut(s) 889
VpaK11BI GGWCC 2 cut(s) 158, 223
XspI CTAG 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.