MD17G1016100.v1.1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0001258
Physical Location & Seq
Forward (+)
1301890 .. 1305394
3505 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1016100.v1.1.491

Sequence Viewer

Length: 897 bp
ATGGACGCCAGAGATGGATGGCACGTGCCATATGGTGAGACCGGTGCTCTGGATAAAGCGATAATCAACCGGACAATGATCAGATTCCGGCCGATCGCTCCGAAACCGGCGGATGGCGGCTCTTCCTCCGGTACGACTTCGGAGGATGGTAAAACCGTTCTTAGTGCAAGCAAGAGAGTCAAGAGGAAGTACATTAGGGTTGCAAAGAACCCTAAAAATAATAACGGCGCCAGAAAAATAATCAACAGTAGATCTTCCACAGTAGATAATCCGACGGCTGTCGTCACTCTTCAGCTGATGCCGGAAAAAACAGACTCGAGAGATTTTTCAGGTAGTGGATCTTGGTGTACTTCTGTTGATCCTACGGTTGTTAAAACATCGGATAACAGGGAGTTGCCTACGTGGATGAACCTAAACCCTAAGATGAACTGGTCCGTCTGGAACGCGGACACCCGATCCGGCACAGATCTTACGGCGGTGGTGCCTCGGGTGGCGGCGGTGGACTCGTGGGTGACGGTGGAAAGCGTGACAGACACGTGCATGGATGTACGAGGTTTAGGTTGTACGGACGTGGAGAAACTGAAGAGTTTGGATAAAGACACGTGTCCGGGGTTTACATCGGACGGTTTTAGCAGAGTGCAGTGGGTGAACGAGGCCTACAAGAGGATGGTGAACTACGTGGAGGGGCAGTCGCCGCCGGCGGAGGTTGTGGTGCGGCTGGCTACGAAAGAGAGCCTGCCGTATACTCACCCAGCGTTCAGTTGCCGGGTGAGGCTGCAGTACTACACGAGGCAGAAGGAGAAGTGCTCGAAGATGGTGCCGTGCGATGTGTGGAGGATGGAGTGCGGGTTGGCTTGGAGGCTGGACATCAAGGCGGCGCTTAGTTTGGGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

33.08

Weight (kDa)

9.22

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 167 - 295 1.9e-57 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 227, 481, 817
AccI GTMKAC 1 cut(s) 743
AccII CGCG 1 cut(s) 446
AclWI GGATC 3 cut(s) 346, 353, 450
AcoI YGGCCR 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 275, 602
AcvI CACGTG 3 cut(s) 25, 537, 603
AcyI GRCGYC 2 cut(s) 6, 228
AfaI GTAC 6 cut(s) 133, 191, 349, 549, 565, 782
AfiI CCNNNNNNNGG 2 cut(s) 113, 663
AflIII ACRYGT 3 cut(s) 534, 600, 602
AgeI ACCGGT 1 cut(s) 41
AjiI CACGTC 1 cut(s) 571
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw21I GWGCWC 2 cut(s) 49, 809
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 3 cut(s) 346, 353, 450
Ama87I CYCGRG 2 cut(s) 316, 486
AoxI GGCC 2 cut(s) 89, 654
ApeKI GCWGC 1 cut(s) 775
AsiGI ACCGGT 1 cut(s) 41
AspLEI GCGC 2 cut(s) 230, 880
AspS9I GGNCC 1 cut(s) 432
AsuC2I CCSGG 2 cut(s) 609, 767
AsuHPI GGTGA 6 cut(s) 47, 523, 658, 682, 740, 781
AvaI CYCGRG 2 cut(s) 316, 486
AvaII GGWCC 1 cut(s) 432
BanI GGYRCC 3 cut(s) 227, 481, 817
BauI CACGAG 2 cut(s) 505, 787
BbrPI CACGTG 3 cut(s) 25, 537, 603
Bbv12I GWGCWC 2 cut(s) 49, 809
BbvI GCAGC 1 cut(s) 762
BccI CCATC 7 cut(s) 8, 12, 107, 140, 661, 808, 832
BceAI ACGGC 5 cut(s) 241, 291, 489, 724, 805
BcgI CGANNNNNNTGC 2 cut(s) 799, 833
BclI TGATCA 1 cut(s) 78
BcnI CCSGG 2 cut(s) 609, 767
BcoDI GTCTC 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 776
BfoI RGCGCY 2 cut(s) 231, 881
BglII AGATCT 2 cut(s) 251, 466
BisI GCNGC 6 cut(s) 118, 495, 695, 716, 776, 876
BlsI GCNGC 6 cut(s) 119, 496, 696, 717, 777, 877
BmcAI AGTACT 1 cut(s) 782
Bme1390I CCNGG 2 cut(s) 609, 767
Bme18I GGWCC 1 cut(s) 432
BmeT110I CYCGRG 2 cut(s) 316, 486
BmgBI CACGTC 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 432
BmiI GGNNCC 3 cut(s) 229, 483, 819
BmrFI CCNGG 2 cut(s) 609, 767
BmsI GCATC 1 cut(s) 288
BoxI GACNNNNGTC 2 cut(s) 278, 603
BplI GAGNNNNNCTC 2 cut(s) 791, 823
BpuMI CCSGG 2 cut(s) 609, 767
BsaAI YACGTR 5 cut(s) 25, 402, 537, 603, 679
BsaHI GRCGYC 2 cut(s) 6, 228
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 485, 608
BsaWI WCCGGW 3 cut(s) 41, 69, 128
BsaXI ACNNNNNCTCC 4 cut(s) 674, 704, 833, 863
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 663
Bse118I RCCGGY 3 cut(s) 41, 106, 697
Bse1I ACTGG 1 cut(s) 434
BseDI CCNNGG 2 cut(s) 485, 608
BseGI GGATG 7 cut(s) 23, 118, 151, 411, 550, 672, 843
BseLI CCNNNNNNNGG 2 cut(s) 113, 663
BseNI ACTGG 1 cut(s) 434
BseX3I CGGCCG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 762
BseYI CCCAGC 1 cut(s) 751
BsgI GTGCAG 1 cut(s) 659
Bsh1236I CGCG 1 cut(s) 446
Bsh1285I CGRYCG 2 cut(s) 92, 96
BshFI GGCC 2 cut(s) 91, 656
BshNI GGYRCC 3 cut(s) 227, 481, 817
BshTI ACCGGT 1 cut(s) 41
BsiEI CGRYCG 2 cut(s) 92, 96
BsiHKAI GWGCWC 2 cut(s) 49, 809
BsiHKCI CYCGRG 2 cut(s) 316, 486
BslI CCNNNNNNNGG 2 cut(s) 113, 663
BsmAI GTCTC 1 cut(s) 32
BsnI GGCC 2 cut(s) 91, 656
Bso31I GGTCTC 1 cut(s) 32
BsoBI CYCGRG 2 cut(s) 316, 486
Bsp1286I GDGCHC 2 cut(s) 49, 809
Bsp143I GATC 7 cut(s) 78, 93, 251, 338, 358, 455, 466
BspANI GGCC 2 cut(s) 91, 656
BspFNI CGCG 1 cut(s) 446
BspLI GGNNCC 3 cut(s) 229, 483, 819
BspMAI CTGCAG 1 cut(s) 780
BspPI GGATC 3 cut(s) 346, 353, 450
BspQI GCTCTTC 1 cut(s) 127
BspT107I GGYRCC 3 cut(s) 227, 481, 817
BspTNI GGTCTC 1 cut(s) 32
BsrFI RCCGGY 3 cut(s) 41, 106, 697
BsrI ACTGG 1 cut(s) 434
BssAI RCCGGY 3 cut(s) 41, 106, 697
BssECI CCNNGG 2 cut(s) 485, 608
BssMI GATC 7 cut(s) 78, 93, 251, 338, 358, 455, 466
BssNAI GTATAC 1 cut(s) 744
BssNI GRCGYC 2 cut(s) 6, 228
BssSI CACGAG 2 cut(s) 505, 787
Bst1107I GTATAC 1 cut(s) 744
Bst2BI CACGAG 2 cut(s) 505, 787
Bst4CI ACNGT 6 cut(s) 157, 248, 262, 367, 517, 626
Bst6I CTCTTC 3 cut(s) 127, 294, 578
BstACI GRCGYC 2 cut(s) 6, 228
BstBAI YACGTR 5 cut(s) 25, 402, 537, 603, 679
BstC8I GCNNGC 4 cut(s) 169, 699, 720, 737
BstDEI CTNAG 3 cut(s) 161, 420, 881
BstENI CCTNNNNNAGG 1 cut(s) 661
BstF5I GGATG 7 cut(s) 23, 118, 151, 411, 550, 672, 843
BstFNI CGCG 1 cut(s) 446
BstH2I RGCGCY 2 cut(s) 231, 881
BstHHI GCGC 2 cut(s) 230, 880
BstKTI GATC 7 cut(s) 81, 96, 254, 341, 361, 458, 469
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 7 cut(s) 78, 93, 251, 338, 358, 455, 466
BstMCI CGRYCG 2 cut(s) 92, 96
BstMWI GCNNNNNNNGC 1 cut(s) 694
BstPAI GACNNNNGTC 2 cut(s) 278, 603
BstSCI CCNGG 2 cut(s) 607, 765
BstSFI CTRYAG 1 cut(s) 776
BstUI CGCG 1 cut(s) 446
BstV1I GCAGC 1 cut(s) 762
BstX2I RGATCY 3 cut(s) 251, 338, 466
BstYI RGATCY 3 cut(s) 251, 338, 466
BstZ17I GTATAC 1 cut(s) 744
BstZI CGGCCG 1 cut(s) 89
BsuRI GGCC 2 cut(s) 91, 656
BtgZI GCGATG 1 cut(s) 840
BtrI CACGTC 1 cut(s) 571
BtsCI GGATG 7 cut(s) 23, 118, 151, 411, 550, 672, 843
BtsI GCAGTG 1 cut(s) 647
BtsIMutI CAGTG 1 cut(s) 647
Cac8I GCNNGC 4 cut(s) 169, 699, 720, 737
CfoI GCGC 2 cut(s) 230, 880
Cfr10I RCCGGY 3 cut(s) 41, 106, 697
Cfr13I GGNCC 1 cut(s) 432
CseI GACGC 1 cut(s) 14
Csp6I GTAC 6 cut(s) 132, 190, 348, 548, 564, 781
CspAI ACCGGT 1 cut(s) 41
CviAII CATG 1 cut(s) 541
CviQI GTAC 6 cut(s) 132, 190, 348, 548, 564, 781
DdeI CTNAG 3 cut(s) 161, 420, 881
DinI GGCGCC 1 cut(s) 229
DpnI GATC 7 cut(s) 80, 95, 253, 340, 360, 457, 468
DpnII GATC 7 cut(s) 78, 93, 251, 338, 358, 455, 466
EaeI YGGCCR 1 cut(s) 89
EagI CGGCCG 1 cut(s) 89
Eam1104I CTCTTC 3 cut(s) 127, 294, 578
EarI CTCTTC 3 cut(s) 127, 294, 578
EciI GGCGGA 2 cut(s) 125, 716
EclXI CGGCCG 1 cut(s) 89
Eco147I AGGCCT 1 cut(s) 656
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 432
Eco52I CGGCCG 1 cut(s) 89
Eco57I CTGAAG 2 cut(s) 275, 602
Eco72I CACGTG 3 cut(s) 25, 537, 603
Eco88I CYCGRG 2 cut(s) 316, 486
EcoNI CCTNNNNNAGG 1 cut(s) 661
EgeI GGCGCC 1 cut(s) 229
EheI GGCGCC 1 cut(s) 229
FaeI CATG 1 cut(s) 544
FaiI YATR 4 cut(s) 31, 33, 542, 744
FatI CATG 1 cut(s) 540
FauI CCCGC 1 cut(s) 839
FauNDI CATATG 1 cut(s) 31
FbaI TGATCA 1 cut(s) 78
FblI GTMKAC 1 cut(s) 743
Fnu4HI GCNGC 6 cut(s) 118, 495, 695, 716, 776, 876
FokI GGATG 7 cut(s) 30, 125, 158, 418, 557, 679, 850
Fsp4HI GCNGC 6 cut(s) 118, 495, 695, 716, 776, 876
GlaI GCGC 2 cut(s) 229, 879
GluI GCNGC 6 cut(s) 118, 495, 695, 716, 776, 876
GsaI CCCAGC 1 cut(s) 755
HaeII RGCGCY 2 cut(s) 231, 881
HaeIII GGCC 2 cut(s) 91, 656
HgaI GACGC 1 cut(s) 14
HhaI GCGC 2 cut(s) 230, 880
Hin1I GRCGYC 2 cut(s) 6, 228
Hin1II CATG 1 cut(s) 544
Hin6I GCGC 2 cut(s) 228, 878
HinP1I GCGC 2 cut(s) 228, 878
HinfI GANTC 4 cut(s) 84, 177, 314, 503
HphI GGTGA 6 cut(s) 47, 523, 658, 682, 740, 781
Hpy166II GTNNAC 6 cut(s) 348, 502, 615, 649, 673, 744
Hpy188I TCNGA 6 cut(s) 83, 102, 142, 273, 382, 622
Hpy188III TCNNGA 4 cut(s) 50, 181, 318, 439
Hpy8I GTNNAC 6 cut(s) 348, 502, 615, 649, 673, 744
Hpy99I CGWCG 1 cut(s) 277
HpyAV CCTTC 1 cut(s) 790
HpyCH4III ACNGT 6 cut(s) 157, 248, 262, 367, 517, 626
HpyCH4IV ACGT 6 cut(s) 24, 401, 536, 570, 602, 678
HpyCH4V TGCA 5 cut(s) 167, 203, 540, 640, 778
HpyF10VI GCNNNNNNNGC 1 cut(s) 694
HpyF3I CTNAG 3 cut(s) 161, 420, 881
HpySE526I ACGT 6 cut(s) 24, 401, 536, 570, 602, 678
Hsp92I GRCGYC 2 cut(s) 6, 228
Hsp92II CATG 1 cut(s) 544
HspAI GCGC 2 cut(s) 228, 878
KasI GGCGCC 1 cut(s) 227
KroI GCCGGC 1 cut(s) 697
KroNI GCCGGC 1 cut(s) 699
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 7 cut(s) 78, 93, 251, 338, 358, 455, 466
LguI GCTCTTC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 1 cut(s) 762
LweI GCATC 1 cut(s) 288
MaeII ACGT 6 cut(s) 24, 401, 536, 570, 602, 678
MaeIII GTNAC 3 cut(s) 283, 511, 526
MalI GATC 7 cut(s) 80, 95, 253, 340, 360, 457, 468
MboI GATC 7 cut(s) 78, 93, 251, 338, 358, 455, 466
MboII GAAGA 5 cut(s) 114, 246, 281, 595, 823
MflI RGATCY 3 cut(s) 251, 338, 466
MhlI GDGCHC 2 cut(s) 49, 809
Mly113I GGCGCC 1 cut(s) 228
MlyI GAGTC 3 cut(s) 186, 308, 497
MmeI TCCRAC 1 cut(s) 296
MreI CGCCGGCG 1 cut(s) 697
MroNI GCCGGC 1 cut(s) 697
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 295
MspR9I CCNGG 2 cut(s) 609, 767
MvnI CGCG 1 cut(s) 446
MwoI GCNNNNNNNGC 1 cut(s) 694
NaeI GCCGGC 1 cut(s) 699
NarI GGCGCC 1 cut(s) 228
NciI CCSGG 2 cut(s) 609, 767
NdeI CATATG 1 cut(s) 31
NdeII GATC 7 cut(s) 78, 93, 251, 338, 358, 455, 466
NgoMIV GCCGGC 1 cut(s) 697
NlaIII CATG 1 cut(s) 544
NlaIV GGNNCC 3 cut(s) 229, 483, 819
NmuCI GTSAC 3 cut(s) 283, 511, 526
PaeR7I CTCGAG 1 cut(s) 316
PceI AGGCCT 1 cut(s) 656
PciSI GCTCTTC 1 cut(s) 127
PdiI GCCGGC 1 cut(s) 699
PfeI GAWTC 1 cut(s) 84
PinAI ACCGGT 1 cut(s) 41
PkrI GCNGC 6 cut(s) 119, 496, 696, 717, 777, 877
Ple19I CGATCG 1 cut(s) 96
PleI GAGTC 3 cut(s) 185, 308, 497
PluTI GGCGCC 1 cut(s) 231
PmaCI CACGTG 3 cut(s) 25, 537, 603
PmlI CACGTG 3 cut(s) 25, 537, 603
PpsI GAGTC 3 cut(s) 185, 308, 497
Ppu21I YACGTR 5 cut(s) 25, 402, 537, 603, 679
PshAI GACNNNNGTC 2 cut(s) 278, 603
PspCI CACGTG 3 cut(s) 25, 537, 603
PspFI CCCAGC 1 cut(s) 751
PspN4I GGNNCC 3 cut(s) 229, 483, 819
PspPI GGNCC 1 cut(s) 432
PsrI GAACNNNNNNTAC 2 cut(s) 641, 673
PstI CTGCAG 1 cut(s) 780
PsuI RGATCY 3 cut(s) 251, 338, 466
PvuI CGATCG 1 cut(s) 96
PvuII CAGCTG 1 cut(s) 295
RsaI GTAC 6 cut(s) 133, 191, 349, 549, 565, 782
RsaNI GTAC 6 cut(s) 132, 190, 348, 548, 564, 781
RseI CAYNNNNRTG 1 cut(s) 539
SapI GCTCTTC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 6 cut(s) 118, 495, 695, 716, 776, 876
Sau3AI GATC 7 cut(s) 78, 93, 251, 338, 358, 455, 466
Sau96I GGNCC 1 cut(s) 432
ScaI AGTACT 1 cut(s) 782
SchI GAGTC 3 cut(s) 186, 308, 497
ScrFI CCNGG 2 cut(s) 609, 767
SduI GDGCHC 2 cut(s) 49, 809
SfaNI GCATC 1 cut(s) 288
SfcI CTRYAG 1 cut(s) 776
SfoI GGCGCC 1 cut(s) 229
Sfr274I CTCGAG 1 cut(s) 316
SgrAI CRCCGGYG 1 cut(s) 697
SinI GGWCC 1 cut(s) 432
SlaI CTCGAG 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 1 cut(s) 316
SmoI CTYRAG 1 cut(s) 316
SseBI AGGCCT 1 cut(s) 656
SspDI GGCGCC 1 cut(s) 227
StuI AGGCCT 1 cut(s) 656
StyD4I CCNGG 2 cut(s) 607, 765
TaaI ACNGT 6 cut(s) 157, 248, 262, 367, 517, 626
TaiI ACGT 6 cut(s) 27, 404, 539, 573, 605, 681
TaqI TCGA 2 cut(s) 317, 809
TatI WGTACW 3 cut(s) 189, 347, 780
TauI GCSGC 5 cut(s) 120, 497, 697, 718, 878
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 1 cut(s) 647
TseFI GTSAC 3 cut(s) 283, 511, 526
TseI GCWGC 1 cut(s) 775
Tsp45I GTSAC 3 cut(s) 283, 511, 526
TspDTI ATGAA 2 cut(s) 422, 440
TspGWI ACGGA 2 cut(s) 424, 581
TspRI CASTG 1 cut(s) 647
VpaK11BI GGWCC 1 cut(s) 432
XagI CCTNNNNNAGG 1 cut(s) 661
XhoI CTCGAG 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 743
ZrmI AGTACT 1 cut(s) 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.