Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001258

Physical Location & Seq

Genomic Coordinates Reverse (-)

26596048 .. 26597135

Gene Structure 1088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G301500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAGGGCGGAGATGGGTGGCAGATGCTAAGATGCGCTGGTGGGGAGGTAGATAAGTCAGTTACTACGACTCGGACCATGCTCAGATTTCGGCCGATCGCACCGAAACCGGTGGATACCGGAGCCACAGCTCCGACAGGAAACAAGAACTCAGTTTTGACAAGTGGAAGAAAGAAGAGAAAATACGTTAGGGTTCAGAACAATAGTGGGTATACTAGAAGAAAGAAAAAGGAACAAGAAATTACAAAAGACGACCTTGCAGCTCCTCCTAATGGCGTGGTGAGGACCCTGCAGCTCTTGCCTGAGAGTACTGTTACCGACCACTCAACGGACGGCGGATCTTGGTACGATTTAGATCATACGGTCAGTAATAATAATAAGAATCCTCCCATAGGGGAAGATCAGGGCCTCCCCATGTGGTTGAGCAGTTACATGGGTGGTGGTTGTTCAGATCCGACGGTGGGGATGCAGTTGCAGCAGATGATGGTGAAGTCTTGGGTGACAGTGGAGTGCGTGGCAGGCACTTGCATGAATGTGCAAGGGACGTCTGGGGTTGGGAGATGTACGGACGCAGATAGGATGAGGAATCTGGAGGGAGACACGTGTCCGGGGTTTATATCGGACGGCGAGAATAGGGTTCAGTGGCTGAACGGGGCGTTTAAGAGGATGGTGAGCCAAGGGAATTACACATCGGAGATAGCGGTGTGGTTGGCGATAAAAGAGAAGTTGCCGTACACGCATTGGGCGTTCACATGCCAAGTAAAGCTGCAATACATGGTGGGTAAGGAGAAGTACTCTCGAATGGTGCCTTGTGATTTGTGGAGAATGGACGGTGGAGGATTTGCATGGAGGCTGGACGTTAAGGCTGCCCTCACTTTGGGCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

296

Amino Acids

32.68

Weight (kDa)

9.05

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27250 AT3G27250 AT5G40800
fragaria_vesca	FvH4_4g27450 FvH4_4g30960 FvH4_4g30960 FvH4_4g30960 FvH4_4g30960 FvH4_6g52950 FvH4_6g52960 FvH4_6g52960 FvH4_6g52960 FvH4_6g52960
malus_domestica	MD09G1015700.v1.1 MD09G1015800.v1.1 MD17G1016100.v1.1 MD17G1016200.v1.1
prunus_persica	Prupe.3G301500_v2.0.a1 Prupe.3G301600_v2.0.a1
pyrus_communis	pycom111g01280 pycom111g01290 pycom17g01300 pycom17g01310
rosa_chinensis	RchiOBHm_Chr2g0174661 RchiOBHm_Chr2g0174671 RchiOBHm_Chr4g0439311
rosa_laevigata	RLG00000006281 RLG00000022282 RLG00000022283
rosa_multiflora	Rmu_co8201038.1_g000001 Rmu_sc0007189.1_g000004 Rmu_sc0007189.1_g000005 Rmu_ssc0000171.1_g000012
rosa_roxburghii	Rroxscaffold_2G00077950 Rroxscaffold_2G00077960 Rroxscaffold_5G00380260
rosa_rugosa	Rorug02G0578600 Rorug02G0578600 Rorug04G0317300 Rorug04G0317400.1
rosa_samantha	Rh2AG659800 Rh2AG659900 Rh2BG041900 Rh2BG670700 Rh2BG670800 Rh2CG633800 Rh2CG633900 Rh2DG684200 Rh2DG684300 Rh4BG380100 Rh4CG394500 Rh4DG374500
rosa_wichuraiana	Rw0G002730 Rw2G054040 Rw2G054050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	548
AccB1I	GGYRCC	1 cut(s)	805
AccI	GTMKAC	1 cut(s)	212
AciI	CCGC	3 cut(s)	9, 336, 701
AclWI	GGATC	2 cut(s)	346, 446
AcoI	YGGCCR	1 cut(s)	92
AcvI	CACGTG	1 cut(s)	603
AcyI	GRCGYC	1 cut(s)	545
AfaI	GTAC	5 cut(s)	310, 347, 565, 734, 794
AfiI	CCNNNNNNNGG	5 cut(s)	272, 328, 392, 461, 877
AflIII	ACRYGT	2 cut(s)	600, 602
AgeI	ACCGGT	1 cut(s)	109
AluBI	AGCT	4 cut(s)	131, 263, 295, 766
AluI	AGCT	4 cut(s)	131, 263, 295, 766
Alw26I	GTCTC	1 cut(s)	591
AlwI	GGATC	2 cut(s)	346, 446
AlwNI	CAGNNNCTG	1 cut(s)	646
AoxI	GGCC	3 cut(s)	92, 406, 880
ApeKI	GCWGC	5 cut(s)	260, 292, 475, 766, 866
AsiGI	ACCGGT	1 cut(s)	109
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	4 cut(s)	75, 285, 406, 880
AsuC2I	CCSGG	1 cut(s)	609
AsuHPI	GGTGA	4 cut(s)	292, 499, 511, 682
AvaII	GGWCC	2 cut(s)	75, 285
BanI	GGYRCC	1 cut(s)	805
BarI	GAAGNNNNNNTAC	4 cut(s)	167, 199, 716, 748
BbrPI	CACGTG	1 cut(s)	603
BbvI	GCAGC	5 cut(s)	272, 304, 487, 753, 853
BccI	CCATC	3 cut(s)	8, 478, 661
BceAI	ACGGC	4 cut(s)	349, 640, 715, 867
BciVI	GTATCC	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	609
BcoDI	GTCTC	1 cut(s)	591
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	290
BfuI	GTATCC	1 cut(s)	109
BisI	GCNGC	5 cut(s)	261, 293, 476, 767, 867
BlsI	GCNGC	5 cut(s)	262, 294, 477, 768, 868
BmcAI	AGTACT	2 cut(s)	310, 794
Bme1390I	CCNGG	1 cut(s)	609
Bme18I	GGWCC	2 cut(s)	75, 285
BmgT120I	GGNCC	4 cut(s)	75, 285, 406, 880
BmiI	GGNNCC	3 cut(s)	124, 287, 807
BmrFI	CCNGG	1 cut(s)	609
BmsI	GCATC	3 cut(s)	15, 23, 456
BoxI	GACNNNNGTC	1 cut(s)	603
BplI	GAGNNNNNCTC	2 cut(s)	779, 811
BpmI	CTGGAG	1 cut(s)	611
BpuMI	CCSGG	1 cut(s)	609
BsaAI	YACGTR	1 cut(s)	603
BsaBI	GATNNNNATC	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	545
BsaJI	CCNNGG	2 cut(s)	608, 676
BsaWI	WCCGGW	2 cut(s)	109, 119
Bsc4I	CCNNNNNNNGG	5 cut(s)	272, 328, 392, 461, 877
Bse118I	RCCGGY	1 cut(s)	109
Bse8I	GATNNNNATC	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	608, 676
BseGI	GGATG	3 cut(s)	471, 585, 672
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	5 cut(s)	272, 328, 392, 461, 877
BseMII	CTCAG	3 cut(s)	97, 165, 294
BseRI	GAGGAG	1 cut(s)	255
BseX3I	CGGCCG	1 cut(s)	92
BseXI	GCAGC	5 cut(s)	272, 304, 487, 753, 853
Bsh1285I	CGRYCG	2 cut(s)	95, 99
BshFI	GGCC	3 cut(s)	94, 408, 882
BshNI	GGYRCC	1 cut(s)	805
BshTI	ACCGGT	1 cut(s)	109
BsiEI	CGRYCG	2 cut(s)	95, 99
BsiSI	CCGG	3 cut(s)	110, 120, 608
BslFI	GGGAC	1 cut(s)	556
BslI	CCNNNNNNNGG	5 cut(s)	272, 328, 392, 461, 877
BsmAI	GTCTC	1 cut(s)	591
BsmFI	GGGAC	1 cut(s)	556
BsnI	GGCC	3 cut(s)	94, 408, 882
Bsp143I	GATC	5 cut(s)	96, 338, 355, 400, 451
BspACI	CCGC	3 cut(s)	9, 336, 701
BspANI	GGCC	3 cut(s)	94, 408, 882
BspCNI	CTCAG	3 cut(s)	96, 164, 295
BspLI	GGNNCC	3 cut(s)	124, 287, 807
BspMAI	CTGCAG	1 cut(s)	294
BspPI	GGATC	2 cut(s)	346, 446
BspT107I	GGYRCC	1 cut(s)	805
BsrFI	RCCGGY	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	2 cut(s)	608, 676
BssMI	GATC	5 cut(s)	96, 338, 355, 400, 451
BssNAI	GTATAC	1 cut(s)	213
BssNI	GRCGYC	1 cut(s)	545
BssT1I	CCWWGG	1 cut(s)	676
Bst1107I	GTATAC	1 cut(s)	213
Bst4CI	ACNGT	5 cut(s)	313, 364, 460, 505, 833
Bst6I	CTCTTC	1 cut(s)	170
BstACI	GRCGYC	1 cut(s)	545
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstBAI	YACGTR	1 cut(s)	603
BstC8I	GCNNGC	1 cut(s)	520
BstDEI	CTNAG	4 cut(s)	29, 83, 151, 303
BstENI	CCTNNNNNAGG	1 cut(s)	390
BstF5I	GGATG	3 cut(s)	471, 585, 672
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	5 cut(s)	99, 341, 358, 403, 454
BstMAI	GTCTC	1 cut(s)	591
BstMBI	GATC	5 cut(s)	96, 338, 355, 400, 451
BstMCI	CGRYCG	2 cut(s)	95, 99
BstMWI	GCNNNNNNNGC	4 cut(s)	298, 475, 519, 736
BstNSI	RCATGY	1 cut(s)	756
BstPAI	GACNNNNGTC	1 cut(s)	603
BstSCI	CCNGG	1 cut(s)	607
BstSFI	CTRYAG	1 cut(s)	290
BstV1I	GCAGC	5 cut(s)	272, 304, 487, 753, 853
BstX2I	RGATCY	2 cut(s)	338, 451
BstYI	RGATCY	2 cut(s)	338, 451
BstZ17I	GTATAC	1 cut(s)	213
BstZI	CGGCCG	1 cut(s)	92
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	3 cut(s)	94, 408, 882
BtsCI	GGATG	3 cut(s)	471, 585, 672
BtsIMutI	CAGTG	2 cut(s)	510, 647
Cac8I	GCNNGC	1 cut(s)	520
CaiI	CAGNNNCTG	1 cut(s)	646
CfoI	GCGC	1 cut(s)	38
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	4 cut(s)	75, 285, 406, 880
CseI	GACGC	1 cut(s)	578
Csp6I	GTAC	5 cut(s)	309, 346, 564, 733, 793
CspAI	ACCGGT	1 cut(s)	109
CviAII	CATG	7 cut(s)	79, 415, 433, 529, 753, 775, 846
CviQI	GTAC	5 cut(s)	309, 346, 564, 733, 793
DdeI	CTNAG	4 cut(s)	29, 83, 151, 303
DpnI	GATC	5 cut(s)	98, 340, 357, 402, 453
DpnII	GATC	5 cut(s)	96, 338, 355, 400, 451
EaeI	YGGCCR	1 cut(s)	92
EagI	CGGCCG	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
EciI	GGCGGA	2 cut(s)	24, 351
EclXI	CGGCCG	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	676
Eco47I	GGWCC	2 cut(s)	75, 285
Eco52I	CGGCCG	1 cut(s)	92
Eco72I	CACGTG	1 cut(s)	603
EcoNI	CCTNNNNNAGG	1 cut(s)	390
EcoO109I	RGGNCCY	2 cut(s)	285, 406
EcoT14I	CCWWGG	1 cut(s)	676
ErhI	CCWWGG	1 cut(s)	676
FaeI	CATG	7 cut(s)	82, 418, 436, 532, 756, 778, 849
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FaqI	GGGAC	1 cut(s)	556
FatI	CATG	7 cut(s)	78, 414, 432, 528, 752, 774, 845
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	5 cut(s)	261, 293, 476, 767, 867
FokI	GGATG	3 cut(s)	478, 592, 679
Fsp4HI	GCNGC	5 cut(s)	261, 293, 476, 767, 867
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	5 cut(s)	261, 293, 476, 767, 867
GsuI	CTGGAG	1 cut(s)	611
HaeIII	GGCC	3 cut(s)	94, 408, 882
HapII	CCGG	3 cut(s)	110, 120, 608
HgaI	GACGC	1 cut(s)	578
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	545
Hin1II	CATG	7 cut(s)	82, 418, 436, 532, 756, 778, 849
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HinfI	GANTC	3 cut(s)	70, 382, 586
HpaII	CCGG	3 cut(s)	110, 120, 608
HphI	GGTGA	4 cut(s)	292, 499, 511, 682
Hpy166II	GTNNAC	3 cut(s)	213, 735, 750
Hpy188I	TCNGA	8 cut(s)	75, 86, 135, 198, 451, 456, 622, 694
Hpy188III	TCNNGA	2 cut(s)	590, 798
Hpy8I	GTNNAC	3 cut(s)	213, 735, 750
Hpy99I	CGWCG	1 cut(s)	460
HpyCH4III	ACNGT	5 cut(s)	313, 364, 460, 505, 833
HpyCH4IV	ACGT	4 cut(s)	186, 545, 602, 858
HpyCH4V	TGCA	8 cut(s)	260, 292, 469, 475, 528, 538, 769, 845
HpyF10VI	GCNNNNNNNGC	4 cut(s)	298, 475, 519, 736
HpyF3I	CTNAG	4 cut(s)	29, 83, 151, 303
HpySE526I	ACGT	4 cut(s)	186, 545, 602, 858
Hsp92I	GRCGYC	1 cut(s)	545
Hsp92II	CATG	7 cut(s)	82, 418, 436, 532, 756, 778, 849
HspAI	GCGC	1 cut(s)	36
Kzo9I	GATC	5 cut(s)	96, 338, 355, 400, 451
LmnI	GCTCC	3 cut(s)	122, 136, 268
Lsp1109I	GCAGC	5 cut(s)	272, 304, 487, 753, 853
LweI	GCATC	3 cut(s)	15, 23, 456
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	4 cut(s)	186, 545, 602, 858
MaeIII	GTNAC	4 cut(s)	61, 313, 428, 499
MalI	GATC	5 cut(s)	98, 340, 357, 402, 453
MboI	GATC	5 cut(s)	96, 338, 355, 400, 451
MboII	GAAGA	4 cut(s)	180, 187, 231, 410
MflI	RGATCY	2 cut(s)	338, 451
MluCI	AATT	2 cut(s)	240, 682
MlyI	GAGTC	1 cut(s)	64
MmeI	TCCRAC	2 cut(s)	158, 479
MseI	TTAA	2 cut(s)	660, 861
MslI	CAYNNNNRTG	2 cut(s)	527, 533
MspI	CCGG	3 cut(s)	110, 120, 608
MspR9I	CCNGG	1 cut(s)	609
MwoI	GCNNNNNNNGC	4 cut(s)	298, 475, 519, 736
NciI	CCSGG	1 cut(s)	609
NdeII	GATC	5 cut(s)	96, 338, 355, 400, 451
NlaIII	CATG	7 cut(s)	82, 418, 436, 532, 756, 778, 849
NlaIV	GGNNCC	3 cut(s)	124, 287, 807
NmuCI	GTSAC	1 cut(s)	499
NspI	RCATGY	1 cut(s)	756
PcsI	WCGNNNNNNNCGW	1 cut(s)	743
PfeI	GAWTC	2 cut(s)	382, 586
PinAI	ACCGGT	1 cut(s)	109
PkrI	GCNGC	5 cut(s)	262, 294, 477, 768, 868
Ple19I	CGATCG	1 cut(s)	99
PleI	GAGTC	1 cut(s)	64
PmaCI	CACGTG	1 cut(s)	603
PmlI	CACGTG	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	603
PpuMI	RGGWCCY	1 cut(s)	285
PshAI	GACNNNNGTC	1 cut(s)	603
Psp5II	RGGWCCY	1 cut(s)	285
PspCI	CACGTG	1 cut(s)	603
PspN4I	GGNNCC	3 cut(s)	124, 287, 807
PspPI	GGNCC	4 cut(s)	75, 285, 406, 880
PspPPI	RGGWCCY	1 cut(s)	285
PstI	CTGCAG	1 cut(s)	294
PstNI	CAGNNNCTG	1 cut(s)	646
PsuI	RGATCY	2 cut(s)	338, 451
PvuI	CGATCG	1 cut(s)	99
RsaI	GTAC	5 cut(s)	310, 347, 565, 734, 794
RsaNI	GTAC	5 cut(s)	309, 346, 564, 733, 793
RseI	CAYNNNNRTG	2 cut(s)	527, 533
SaqAI	TTAA	2 cut(s)	660, 861
SatI	GCNGC	5 cut(s)	261, 293, 476, 767, 867
Sau3AI	GATC	5 cut(s)	96, 338, 355, 400, 451
Sau96I	GGNCC	4 cut(s)	75, 285, 406, 880
ScaI	AGTACT	2 cut(s)	310, 794
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	609
SfaNI	GCATC	3 cut(s)	15, 23, 456
SfcI	CTRYAG	1 cut(s)	290
SinI	GGWCC	2 cut(s)	75, 285
SmiMI	CAYNNNNRTG	2 cut(s)	527, 533
Sse9I	AATT	2 cut(s)	240, 682
SsiI	CCGC	3 cut(s)	9, 336, 701
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	607
StyI	CCWWGG	1 cut(s)	676
TaaI	ACNGT	5 cut(s)	313, 364, 460, 505, 833
TaiI	ACGT	4 cut(s)	189, 548, 605, 861
TaqI	TCGA	1 cut(s)	799
TasI	AATT	2 cut(s)	240, 682
TatI	WGTACW	2 cut(s)	308, 792
TfiI	GAWTC	2 cut(s)	382, 586
Tru1I	TTAA	2 cut(s)	660, 861
Tru9I	TTAA	2 cut(s)	660, 861
TscAI	CASTG	2 cut(s)	510, 647
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	5 cut(s)	260, 292, 475, 766, 866
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	1 cut(s)	545
TspGWI	ACGGA	2 cut(s)	344, 581
TspRI	CASTG	2 cut(s)	510, 647
VpaK11BI	GGWCC	2 cut(s)	75, 285
XagI	CCTNNNNNAGG	1 cut(s)	390
XceI	RCATGY	1 cut(s)	756
XmiI	GTMKAC	1 cut(s)	212
XspI	CTAG	1 cut(s)	216
ZraI	GACGTC	1 cut(s)	546
ZrmI	AGTACT	2 cut(s)	310, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.