FvH4_4g30960

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001258
Physical Location & Seq
Forward (+)
30329872 .. 30335562
5691 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30960.t2

Sequence Viewer

Length: 858 bp
ATGGAGGCAGGCAAAGATGTTGACGGTTCTTCTGTTTTGAATCGCTTACTGCTCAAGTACCGGCCGATTGCGCCGAAGCCCTTCACCGGAGGCATACCTTCGGATAAGCTTCCGAAAAGGACCAAGAGAAAGTACGTTAGGTCGGTCCGGAAGTGTAGTGAAGAAGAGAGTAAGGGGAAAGAGGAAACGGCGGGTGAGCAGCAGCGCGTGGAGACACTGGAGCTGCTGCCTCAGATGATAGATGATAGTGGTAGCAGCGGTACCGACCGATCCAAGCACGGTGGCGGATCTAGCTGTGAGGTTGATGCTAGGGTTGTTGGGGACGGCGGTCATTGGTTGAGCTTGAGTTTGAGTGGAGCGGCGGCGATGGGGAAGCAGGAGGTTGAGAGCGTGTCAGATCCGTCGGCGGTGATGGATCGGGTGGGAGGAGTGGAGTCGTGGGTGACGGTGGAGTGCGTGAGCGGCACATGCATGACGGCTCCGAGTTCTGCTCAAGGGTTTGGGTTAGAGGAGAGAATGAGAAGATTGGAGAACGACACGTGTCCGGGGTTCATATCGGACTGTTGGAACAGAGTGCAGTGGCTGAACGGAGCTTTTAGGAGGATGGTGATGATGACGAGGCAGCAGCAACTGTTGCCGGAGGTAACAGTGTGGTTATGGATGAATGAGGAGCTGCCATACACGGCGAACAACACGGCGTTCACTTGCCAAGTGAAACTGAAATACACGGTGGCGGAGAGCCGGAACAACAACAAGAGCTACTACTCTCAGTTGGTGCCTTGTGATATGTGGAGGATTGACGGCGGAGGATTTGCATGGAGGCTCGACGTTAAATCCGCCCTCACTCTCGGCGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

31.49

Weight (kDa)

6.76

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 144 - 282 2.5e-46 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 260
AccB1I GGYRCC 2 cut(s) 260, 775
AccBSI CCGCTC 2 cut(s) 359, 462
AccII CGCG 1 cut(s) 207
AccIII TCCGGA 1 cut(s) 147
AclWI GGATC 4 cut(s) 264, 295, 392, 423
AcoI YGGCCR 1 cut(s) 62
AcvI CACGTG 1 cut(s) 540
AfaI GTAC 3 cut(s) 59, 134, 262
AfiI CCNNNNNNNGG 1 cut(s) 86
AflIII ACRYGT 2 cut(s) 537, 539
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 7 cut(s) 109, 223, 294, 342, 593, 673, 759
AluI AGCT 7 cut(s) 109, 223, 294, 342, 593, 673, 759
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 4 cut(s) 264, 295, 392, 423
AlwNI CAGNNNCTG 2 cut(s) 583, 631
Aor13HI TCCGGA 1 cut(s) 147
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 8 cut(s) 199, 202, 223, 226, 255, 622, 625, 673
Asp700I GAANNNNTTC 1 cut(s) 80
Asp718I GGTACC 1 cut(s) 260
AspLEI GCGC 2 cut(s) 73, 207
AspS9I GGNCC 2 cut(s) 120, 145
AsuC2I CCSGG 1 cut(s) 546
AsuHPI GGTGA 5 cut(s) 76, 206, 421, 454, 619
AvaII GGWCC 2 cut(s) 120, 145
BanI GGYRCC 2 cut(s) 260, 775
BbrPI CACGTG 1 cut(s) 540
BbvI GCAGC 8 cut(s) 210, 211, 213, 214, 267, 634, 637, 660
BccI CCATC 3 cut(s) 361, 406, 598
BceAI ACGGC 6 cut(s) 204, 340, 492, 699, 711, 817
BcnI CCSGG 1 cut(s) 546
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 2 cut(s) 291, 309
Bme1390I CCNGG 1 cut(s) 546
Bme18I GGWCC 2 cut(s) 120, 145
BmgT120I GGNCC 2 cut(s) 120, 145
BmiI GGNNCC 3 cut(s) 262, 480, 777
BmrFI CCNGG 1 cut(s) 546
BmsI GCATC 1 cut(s) 295
BoxI GACNNNNGTC 2 cut(s) 327, 540
BplI GAGNNNNNCTC 2 cut(s) 475, 507
BpmI CTGGAG 1 cut(s) 239
BpuEI CTTGAG 3 cut(s) 38, 364, 477
BpuMI CCSGG 1 cut(s) 546
BsaAI YACGTR 1 cut(s) 540
BsaJI CCNNGG 1 cut(s) 545
BsaWI WCCGGW 2 cut(s) 86, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse118I RCCGGY 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 222
BseAI TCCGGA 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 545
BseGI GGATG 2 cut(s) 609, 666
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMII CTCAG 2 cut(s) 245, 782
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 3 cut(s) 441, 524, 683
BseX3I CGGCCG 1 cut(s) 62
BseXI GCAGC 8 cut(s) 210, 211, 213, 214, 267, 634, 637, 660
BsgI GTGCAG 1 cut(s) 596
Bsh1236I CGCG 1 cut(s) 207
Bsh1285I CGRYCG 2 cut(s) 65, 268
BshFI GGCC 1 cut(s) 64
BshNI GGYRCC 2 cut(s) 260, 775
BsiEI CGRYCG 2 cut(s) 65, 268
BsiSI CCGG 6 cut(s) 61, 87, 148, 545, 638, 742
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 1 cut(s) 64
Bsp13I TCCGGA 1 cut(s) 147
Bsp143I GATC 4 cut(s) 269, 287, 397, 415
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 2 cut(s) 244, 781
BspEI TCCGGA 1 cut(s) 147
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 3 cut(s) 262, 480, 777
BspPI GGATC 4 cut(s) 264, 295, 392, 423
BspT107I GGYRCC 2 cut(s) 260, 775
BsrBI CCGCTC 2 cut(s) 359, 462
BsrFI RCCGGY 1 cut(s) 60
BsrI ACTGG 1 cut(s) 222
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 545
BssMI GATC 4 cut(s) 269, 287, 397, 415
Bst4CI ACNGT 7 cut(s) 26, 281, 448, 563, 633, 649, 730
Bst6I CTCTTC 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 634
BstBAI YACGTR 1 cut(s) 540
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 231, 768
BstF5I GGATG 2 cut(s) 609, 666
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 2 cut(s) 73, 207
BstKTI GATC 4 cut(s) 272, 290, 400, 418
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 4 cut(s) 269, 287, 397, 415
BstMCI CGRYCG 2 cut(s) 65, 268
BstMWI GCNNNNNNNGC 5 cut(s) 70, 291, 462, 468, 634
BstNSI RCATGY 1 cut(s) 471
BstPAI GACNNNNGTC 2 cut(s) 327, 540
BstSCI CCNGG 1 cut(s) 544
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 8 cut(s) 210, 211, 213, 214, 267, 634, 637, 660
BstX2I RGATCY 2 cut(s) 287, 397
BstYI RGATCY 2 cut(s) 287, 397
BstZI CGGCCG 1 cut(s) 62
BsuRI GGCC 1 cut(s) 64
BtgZI GCGATG 1 cut(s) 380
BtsCI GGATG 2 cut(s) 609, 666
BtsI GCAGTG 1 cut(s) 584
BtsIMutI CAGTG 3 cut(s) 215, 584, 654
Cac8I GCNNGC 1 cut(s) 10
CaiI CAGNNNCTG 2 cut(s) 583, 631
CfoI GCGC 2 cut(s) 73, 207
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 2 cut(s) 120, 145
CpoI CGGWCCG 1 cut(s) 145
Csp6I GTAC 3 cut(s) 58, 133, 261
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CspI CGGWCCG 1 cut(s) 145
CviAII CATG 3 cut(s) 468, 472, 816
CviQI GTAC 3 cut(s) 58, 133, 261
DdeI CTNAG 2 cut(s) 231, 768
DpnI GATC 4 cut(s) 271, 289, 399, 417
DpnII GATC 4 cut(s) 269, 287, 397, 415
EaeI YGGCCR 1 cut(s) 62
EagI CGGCCG 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
EciI GGCGGA 4 cut(s) 300, 749, 819, 826
EclXI CGGCCG 1 cut(s) 62
Eco47I GGWCC 2 cut(s) 120, 145
Eco52I CGGCCG 1 cut(s) 62
Eco72I CACGTG 1 cut(s) 540
EcoT22I ATGCAT 1 cut(s) 473
FaeI CATG 3 cut(s) 471, 475, 819
FaiI YATR 8 cut(s) 95, 469, 473, 554, 658, 679, 788, 817
FaqI GGGAC 1 cut(s) 335
FatI CATG 3 cut(s) 467, 471, 815
FauI CCCGC 1 cut(s) 184
FokI GGATG 2 cut(s) 616, 673
FspBI CTAG 2 cut(s) 291, 309
GlaI GCGC 2 cut(s) 72, 206
GsuI CTGGAG 1 cut(s) 239
HaeIII GGCC 1 cut(s) 64
HapII CCGG 6 cut(s) 61, 87, 148, 545, 638, 742
HhaI GCGC 2 cut(s) 73, 207
Hin1II CATG 3 cut(s) 471, 475, 819
Hin6I GCGC 2 cut(s) 71, 205
HinP1I GCGC 2 cut(s) 71, 205
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 2 cut(s) 40, 434
HpaII CCGG 6 cut(s) 61, 87, 148, 545, 638, 742
HphI GGTGA 5 cut(s) 76, 206, 421, 454, 619
Hpy166II GTNNAC 2 cut(s) 22, 702
Hpy188I TCNGA 6 cut(s) 103, 114, 234, 397, 483, 559
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 2 cut(s) 22, 702
Hpy99I CGWCG 2 cut(s) 406, 830
HpyAV CCTTC 2 cut(s) 91, 108
HpyCH4III ACNGT 7 cut(s) 26, 281, 448, 563, 633, 649, 730
HpyCH4IV ACGT 3 cut(s) 135, 539, 828
HpyCH4V TGCA 3 cut(s) 471, 577, 815
HpyF10VI GCNNNNNNNGC 5 cut(s) 70, 291, 462, 468, 634
HpyF3I CTNAG 2 cut(s) 231, 768
HpySE526I ACGT 3 cut(s) 135, 539, 828
Hsp92II CATG 3 cut(s) 471, 475, 819
HspAI GCGC 2 cut(s) 71, 205
Kpn2I TCCGGA 1 cut(s) 147
KpnI GGTACC 1 cut(s) 264
Kzo9I GATC 4 cut(s) 269, 287, 397, 415
LmnI GCTCC 5 cut(s) 220, 356, 484, 590, 670
LpnPI CCDG 8 cut(s) 74, 100, 161, 203, 362, 558, 651, 755
Lsp1109I GCAGC 8 cut(s) 210, 211, 213, 214, 267, 634, 637, 660
LweI GCATC 1 cut(s) 295
MaeI CTAG 2 cut(s) 291, 309
MaeII ACGT 3 cut(s) 135, 539, 828
MaeIII GTNAC 2 cut(s) 442, 643
MalI GATC 4 cut(s) 271, 289, 399, 417
MbiI CCGCTC 2 cut(s) 359, 462
MboI GATC 4 cut(s) 269, 287, 397, 415
MboII GAAGA 4 cut(s) 21, 173, 176, 534
MflI RGATCY 2 cut(s) 287, 397
MlyI GAGTC 1 cut(s) 443
MmeI TCCRAC 1 cut(s) 545
Mph1103I ATGCAT 1 cut(s) 473
MroI TCCGGA 1 cut(s) 147
MroXI GAANNNNTTC 1 cut(s) 80
MseI TTAA 1 cut(s) 831
MslI CAYNNNNRTG 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 6 cut(s) 61, 87, 148, 545, 638, 742
MspR9I CCNGG 1 cut(s) 546
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 5 cut(s) 70, 291, 462, 468, 634
NciI CCSGG 1 cut(s) 546
NdeII GATC 4 cut(s) 269, 287, 397, 415
NlaIII CATG 3 cut(s) 471, 475, 819
NlaIV GGNNCC 3 cut(s) 262, 480, 777
NmeAIII GCCGAG 1 cut(s) 828
NmuCI GTSAC 1 cut(s) 442
NsiI ATGCAT 1 cut(s) 473
NspI RCATGY 1 cut(s) 471
PdmI GAANNNNTTC 1 cut(s) 80
PfeI GAWTC 1 cut(s) 40
PleI GAGTC 1 cut(s) 442
PmaCI CACGTG 1 cut(s) 540
PmlI CACGTG 1 cut(s) 540
PpsI GAGTC 1 cut(s) 442
Ppu21I YACGTR 1 cut(s) 540
PshAI GACNNNNGTC 2 cut(s) 327, 540
PspCI CACGTG 1 cut(s) 540
PspN4I GGNNCC 3 cut(s) 262, 480, 777
PspPI GGNCC 2 cut(s) 120, 145
PstNI CAGNNNCTG 2 cut(s) 583, 631
PsuI RGATCY 2 cut(s) 287, 397
RsaI GTAC 3 cut(s) 59, 134, 262
RsaNI GTAC 3 cut(s) 58, 133, 261
RseI CAYNNNNRTG 1 cut(s) 470
Rsr2I CGGWCCG 1 cut(s) 145
RsrII CGGWCCG 1 cut(s) 145
SaqAI TTAA 1 cut(s) 831
Sau3AI GATC 4 cut(s) 269, 287, 397, 415
Sau96I GGNCC 2 cut(s) 120, 145
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 1 cut(s) 546
SfaNI GCATC 1 cut(s) 295
SinI GGWCC 2 cut(s) 120, 145
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 3 cut(s) 53, 343, 492
SmoI CTYRAG 3 cut(s) 53, 343, 492
SspMI CTAG 2 cut(s) 291, 309
StyD4I CCNGG 1 cut(s) 544
TaaI ACNGT 7 cut(s) 26, 281, 448, 563, 633, 649, 730
TaiI ACGT 3 cut(s) 138, 542, 831
TaqI TCGA 1 cut(s) 825
TaqII GACCGA 2 cut(s) 133, 282
TauI GCSGC 4 cut(s) 362, 365, 465, 855
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 831
Tru9I TTAA 1 cut(s) 831
TscAI CASTG 3 cut(s) 222, 584, 654
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 8 cut(s) 199, 202, 223, 226, 255, 622, 625, 673
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 2 cut(s) 541, 677
TspGWI ACGGA 2 cut(s) 390, 603
TspRI CASTG 3 cut(s) 222, 584, 654
VpaK11BI GGWCC 2 cut(s) 120, 145
XceI RCATGY 1 cut(s) 471
XmnI GAANNNNTTC 1 cut(s) 80
XspI CTAG 2 cut(s) 291, 309
Zsp2I ATGCAT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.