Rorug04G0317300

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001258
Physical Location & Seq
Reverse (-)
49165208 .. 49166354
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0317300.1

Sequence Viewer

Length: 261 bp
ATGGTGCTTCAGAACGATATCGATTTGCTTCACCCACCGGCTGAGCTCGAGAAGAGGAAGCACAAGCTCAAGCGACTCGTGCAGACCCCCAACTCTTTCTTCATGGACGTGAAGTGCCAGGGTTGCTTCAACATTACGACTGTGTTCAGTCACTCCCAGACCGTTGTGGTGTGTGGGAATTGCCAGACTGTGCTGTGCCAGCCCACTGGTGGCCGTGCCAGACTCACCGAGGGATGCTCTTTCCGAAAGAAGGGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.65

Weight (kDa)

9.08

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S27e PF01667 30 - 84 1.5e-26 Ribosomal protein S27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 211
AfiI CCNNNNNNNGG 2 cut(s) 209, 250
AgsI TTSAA 1 cut(s) 130
AjiI CACGTC 1 cut(s) 109
AjnI CCWGG 1 cut(s) 117
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 2 cut(s) 46, 67
AluI AGCT 2 cut(s) 46, 67
Alw21I GWGCWC 1 cut(s) 48
Ama87I CYCGRG 1 cut(s) 47
AoxI GGCC 1 cut(s) 211
AsuHPI GGTGA 2 cut(s) 23, 217
AvaI CYCGRG 1 cut(s) 47
BanII GRGCYC 1 cut(s) 48
BauI CACGAG 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 48
BceAI ACGGC 1 cut(s) 198
BciT130I CCWGG 1 cut(s) 119
BlpI GCTNAGC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 119
BmeT110I CYCGRG 1 cut(s) 47
BmgBI CACGTC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 1 cut(s) 224
BplI GAGNNNNNCTC 2 cut(s) 221, 253
Bpu1102I GCTNAGC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 53
Bsa29I ATCGAT 1 cut(s) 21
BsaJI CCNNGG 2 cut(s) 118, 228
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 250
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 119
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 118, 228
BseGI GGATG 1 cut(s) 239
BseLI CCNNNNNNNGG 2 cut(s) 209, 250
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 101
BshFI GGCC 1 cut(s) 213
BshVI ATCGAT 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 209, 250
BsnI GGCC 1 cut(s) 213
BsoBI CYCGRG 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 48
Bsp1720I GCTNAGC 1 cut(s) 42
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 34
BspDI ATCGAT 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 37
BsrI ACTGG 1 cut(s) 211
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 2 cut(s) 118, 228
BssSI CACGAG 1 cut(s) 77
Bst2BI CACGAG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 3 cut(s) 142, 163, 190
Bst6I CTCTTC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 42
BstF5I GGATG 1 cut(s) 239
BstMWI GCNNNNNNNGC 3 cut(s) 79, 123, 199
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstXI CCANNNNNNTGG 1 cut(s) 206
Bsu15I ATCGAT 1 cut(s) 21
BsuRI GGCC 1 cut(s) 213
BsuTUI ATCGAT 1 cut(s) 21
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 239
BtsIMutI CAGTG 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 200
Cfr10I RCCGGY 1 cut(s) 37
ClaI ATCGAT 1 cut(s) 21
CviAII CATG 1 cut(s) 103
CviJI RGCY 5 cut(s) 41, 46, 67, 202, 213
CviKI_1 RGCY 5 cut(s) 41, 46, 67, 202, 213
DdeI CTNAG 1 cut(s) 42
EaeI YGGCCR 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Ecl136II GAGCTC 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 48
Eco32I GATATC 1 cut(s) 19
Eco53kI GAGCTC 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 47
EcoICRI GAGCTC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 117
EcoRV GATATC 1 cut(s) 19
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 1 cut(s) 106
FaiI YATR 1 cut(s) 104
FatI CATG 1 cut(s) 102
FokI GGATG 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 213
HapII CCGG 1 cut(s) 38
Hin1II CATG 1 cut(s) 106
HinfI GANTC 2 cut(s) 75, 222
HpaII CCGG 1 cut(s) 38
HphI GGTGA 2 cut(s) 23, 217
Hpy188I TCNGA 2 cut(s) 12, 245
Hpy188III TCNNGA 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 3 cut(s) 142, 163, 190
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 123, 199
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 1 cut(s) 106
LpnPI CCDG 8 cut(s) 51, 104, 131, 170, 192, 197, 212, 232
LweI GCATC 1 cut(s) 224
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 149
MboII GAAGA 2 cut(s) 64, 91
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 1 cut(s) 178
MlyI GAGTC 2 cut(s) 69, 216
MnlI CCTC 2 cut(s) 48, 223
MslI CAYNNNNRTG 1 cut(s) 107
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 3 cut(s) 79, 123, 199
NlaIII CATG 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 47
PleI GAGTC 2 cut(s) 69, 216
PpsI GAGTC 2 cut(s) 69, 216
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 107
SacI GAGCTC 1 cut(s) 48
SchI GAGTC 2 cut(s) 69, 216
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 1 cut(s) 48
SetI ASST 3 cut(s) 48, 69, 111
SfaNI GCATC 1 cut(s) 224
Sfr274I CTCGAG 1 cut(s) 47
SlaI CTCGAG 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 2 cut(s) 47, 68
SmoI CTYRAG 2 cut(s) 47, 68
Sse9I AATT 1 cut(s) 178
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 117
TaaI ACNGT 3 cut(s) 142, 163, 190
TaiI ACGT 1 cut(s) 111
TaqI TCGA 2 cut(s) 21, 48
TasI AATT 1 cut(s) 178
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 91
TspRI CASTG 1 cut(s) 211
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XhoI CTCGAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.