Rh2BG670700

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001258
Physical Location & Seq
Reverse (-)
88275906 .. 88279047
3142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG670700.1

Sequence Viewer

Length: 915 bp
ATGGAAGGAGGTGGAGAAGGATGGCGCCGTATGATAAGCGGTGCGCAGGATAAGTATGTGTTGAATCAGATAATGCTGAGATTCCGGCCGATTGCGCCGAAGCCAGTCACCGGAGGGTCAGATTCGGGTGAGCCGCCGACGGTTAGGAGTAACGCGCTCGCTTCCAGGGGGAGAACCAAGAGGAAGTACGTTAGGGTTCGTAAGAATGTTAACGGCGAGGAGGAGAGTGGGAGAGAGAGGGTGGACAGTAAACGAGTGGTGACACTGCAGCTGTTGCCGGAGATCGAGAAGAGCGGCGATTACAGCAGTGACCAATCGACGGACGGCGGATCTGGCTGTGAGTTTGATTCTAGTATCGGCACAAATCATCAGTGGTTGAGTCTTAGTAAGATCGGAAGAGAGAATTACATGAGAGCGGATTCCGCGGCGGATCCGGCGGCGGTGATGGACCAGATGGGAGGAGTGGAGTCGTGGGTGACGCTGGAGTGCGTGACGGGCACATGCATGAAGGCTCCACCTCCTCAGGGGTTGGGAATCAGCACTACGGACGAGGAGAGAATGAGGAGTCTGGATGTTGACACGTGTCCGGGGTTCGTCTCCGACGGTTGGAACAGGGTTTGGTGGCTTAACGGAGCGTTCAGGAGGATGGTGATGATGACGTGGCAGCAACAGTTGCCGGAGATAGCCGTGTGGTTAGCGATGAACGAGGAGCTGCCGTATACCCACTCGGCGTTTACGTGCCAGGTGAAGCTGAGATACACTGTGGGCAACAAGGAGAAGGAGAAGTATTACCACTCGCAAATGCTCCACTACATATTTAAGATGTTGAAGACTGAGCCAGGAATTGTAGGTCGAGATGATAAGGTTAATTTCATTTGGACGGAAGAGGCGGCTTCTGAGGATTTGAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

304

Amino Acids

34.26

Weight (kDa)

6.48

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 155 - 261 1.3e-33 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 45
AccB1I GGYRCC 1 cut(s) 24
AccBSI CCGCTC 2 cut(s) 294, 416
AccI GTMKAC 1 cut(s) 719
AccII CGCG 2 cut(s) 155, 425
AclWI GGATC 3 cut(s) 337, 425, 438
AcoI YGGCCR 1 cut(s) 86
AcvI CACGTG 1 cut(s) 582
AcyI GRCGYC 1 cut(s) 25
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 4 cut(s) 110, 319, 524, 606
AflIII ACRYGT 2 cut(s) 579, 581
AgsI TTSAA 3 cut(s) 64, 829, 907
AjiI CACGTC 1 cut(s) 660
AjnI CCWGG 3 cut(s) 164, 741, 838
AluBI AGCT 3 cut(s) 271, 712, 751
AluI AGCT 3 cut(s) 271, 712, 751
Alw26I GTCTC 1 cut(s) 601
AlwI GGATC 3 cut(s) 337, 425, 438
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 3 cut(s) 268, 664, 712
AspLEI GCGC 4 cut(s) 27, 46, 97, 157
AspS9I GGNCC 1 cut(s) 448
AsuC2I CCSGG 1 cut(s) 588
AsuHPI GGTGA 7 cut(s) 100, 140, 271, 454, 487, 661, 757
AvaII GGWCC 1 cut(s) 448
AxyI CCTNAGG 1 cut(s) 522
BaeGI GKGCMC 1 cut(s) 500
BamHI GGATCC 1 cut(s) 430
BanI GGYRCC 1 cut(s) 24
BarI GAAGNNNNNNTAC 2 cut(s) 740, 772
BbrPI CACGTG 1 cut(s) 582
BbsI GAAGAC 1 cut(s) 836
BbvI GCAGC 3 cut(s) 280, 676, 699
BccI CCATC 4 cut(s) 15, 439, 448, 640
BceAI ACGGC 5 cut(s) 12, 229, 340, 671, 700
BciT130I CCWGG 3 cut(s) 166, 743, 840
BcnI CCSGG 1 cut(s) 588
BcoDI GTCTC 1 cut(s) 601
BfaI CTAG 1 cut(s) 351
BfmI CTRYAG 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 28
BisI GCNGC 8 cut(s) 134, 269, 295, 426, 438, 665, 713, 891
BlsI GCNGC 8 cut(s) 135, 270, 296, 427, 439, 666, 714, 892
Bme1390I CCNGG 4 cut(s) 166, 588, 743, 840
Bme18I GGWCC 1 cut(s) 448
BmgBI CACGTC 1 cut(s) 660
BmgT120I GGNCC 1 cut(s) 448
BmiI GGNNCC 3 cut(s) 26, 432, 513
BmrFI CCNGG 4 cut(s) 166, 588, 743, 840
BoxI GACNNNNGTC 1 cut(s) 582
BpiI GAAGAC 1 cut(s) 836
BpmI CTGGAG 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 588
BsaAI YACGTR 2 cut(s) 582, 738
BsaHI GRCGYC 1 cut(s) 25
BsaJI CCNNGG 3 cut(s) 165, 423, 587
BsaWI WCCGGW 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 701, 731
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 319, 524, 606
Bse1I ACTGG 1 cut(s) 104
Bse21I CCTNAGG 1 cut(s) 522
BseBI CCWGG 3 cut(s) 166, 743, 840
BseDI CCNNGG 3 cut(s) 165, 423, 587
BseGI GGATG 3 cut(s) 26, 577, 651
BseLI CCNNNNNNNGG 4 cut(s) 110, 319, 524, 606
BseMII CTCAG 5 cut(s) 68, 536, 743, 825, 888
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 7 cut(s) 233, 236, 474, 510, 566, 577, 722
BseSI GKGCMC 1 cut(s) 500
BseX3I CGGCCG 1 cut(s) 86
BseXI GCAGC 3 cut(s) 280, 676, 699
Bsh1236I CGCG 2 cut(s) 155, 425
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 1 cut(s) 88
BshNI GGYRCC 1 cut(s) 24
BsiEI CGRYCG 1 cut(s) 89
BsiSI CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
BslI CCNNNNNNNGG 4 cut(s) 110, 319, 524, 606
BsmAI GTCTC 1 cut(s) 601
BsmBI CGTCTC 1 cut(s) 601
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 500
Bsp143I GATC 4 cut(s) 282, 329, 390, 430
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 5 cut(s) 69, 535, 744, 826, 889
BspFNI CGCG 2 cut(s) 155, 425
BspLI GGNNCC 3 cut(s) 26, 432, 513
BspMAI CTGCAG 1 cut(s) 270
BspPI GGATC 3 cut(s) 337, 425, 438
BspQI GCTCTTC 1 cut(s) 284
BspT107I GGYRCC 1 cut(s) 24
BsrBI CCGCTC 2 cut(s) 294, 416
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 3 cut(s) 165, 423, 587
BssMI GATC 4 cut(s) 282, 329, 390, 430
BssNAI GTATAC 1 cut(s) 720
BssNI GRCGYC 1 cut(s) 25
Bst1107I GTATAC 1 cut(s) 720
Bst2UI CCWGG 3 cut(s) 166, 743, 840
Bst4CI ACNGT 5 cut(s) 142, 248, 605, 672, 763
Bst6I CTCTTC 3 cut(s) 284, 391, 879
BstACI GRCGYC 1 cut(s) 25
BstAPI GCANNNNNTGC 2 cut(s) 274, 673
BstBAI YACGTR 2 cut(s) 582, 738
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 6 cut(s) 77, 383, 522, 752, 834, 897
BstDSI CCRYGG 1 cut(s) 423
BstF5I GGATG 3 cut(s) 26, 577, 651
BstFNI CGCG 2 cut(s) 155, 425
BstH2I RGCGCY 1 cut(s) 28
BstHHI GCGC 4 cut(s) 27, 46, 97, 157
BstKTI GATC 4 cut(s) 285, 332, 393, 433
BstMAI GTCTC 1 cut(s) 601
BstMBI GATC 4 cut(s) 282, 329, 390, 430
BstMCI CGRYCG 1 cut(s) 89
BstMWI GCNNNNNNNGC 8 cut(s) 94, 274, 303, 333, 422, 434, 495, 673
BstNI CCWGG 3 cut(s) 166, 743, 840
BstNSI RCATGY 1 cut(s) 504
BstPAI GACNNNNGTC 1 cut(s) 582
BstSCI CCNGG 4 cut(s) 164, 586, 741, 838
BstSFI CTRYAG 1 cut(s) 266
BstSLI GKGCMC 1 cut(s) 500
BstUI CGCG 2 cut(s) 155, 425
BstV1I GCAGC 3 cut(s) 280, 676, 699
BstV2I GAAGAC 1 cut(s) 836
BstX2I RGATCY 2 cut(s) 329, 430
BstYI RGATCY 2 cut(s) 329, 430
BstZ17I GTATAC 1 cut(s) 720
BstZI CGGCCG 1 cut(s) 86
Bsu36I CCTNAGG 1 cut(s) 522
BsuRI GGCC 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 423
BtgZI GCGATG 1 cut(s) 713
BtrI CACGTC 1 cut(s) 660
BtsCI GGATG 3 cut(s) 26, 577, 651
BtsI GCAGTG 2 cut(s) 263, 313
BtsIMutI CAGTG 4 cut(s) 263, 313, 377, 759
Cac8I GCNNGC 1 cut(s) 159
CfoI GCGC 4 cut(s) 27, 46, 97, 157
Cfr13I GGNCC 1 cut(s) 448
Cfr42I CCGCGG 1 cut(s) 426
CseI GACGC 1 cut(s) 487
Csp6I GTAC 1 cut(s) 187
CviAII CATG 3 cut(s) 409, 501, 505
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 6 cut(s) 77, 383, 522, 752, 834, 897
DinI GGCGCC 1 cut(s) 26
DpnI GATC 4 cut(s) 284, 331, 392, 432
DpnII GATC 4 cut(s) 282, 329, 390, 430
EaeI YGGCCR 1 cut(s) 86
EagI CGGCCG 1 cut(s) 86
Eam1104I CTCTTC 3 cut(s) 284, 391, 879
EarI CTCTTC 3 cut(s) 284, 391, 879
EciI GGCGGA 2 cut(s) 342, 443
EclXI CGGCCG 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 448
Eco52I CGGCCG 1 cut(s) 86
Eco72I CACGTG 1 cut(s) 582
Eco81I CCTNAGG 1 cut(s) 522
EcoRII CCWGG 3 cut(s) 164, 741, 838
EcoT22I ATGCAT 1 cut(s) 506
EgeI GGCGCC 1 cut(s) 26
EheI GGCGCC 1 cut(s) 26
Esp3I CGTCTC 1 cut(s) 601
FaeI CATG 3 cut(s) 412, 504, 508
FaiI YATR 7 cut(s) 32, 57, 410, 502, 506, 720, 815
FatI CATG 3 cut(s) 408, 500, 504
FblI GTMKAC 1 cut(s) 719
Fnu4HI GCNGC 8 cut(s) 134, 269, 295, 426, 438, 665, 713, 891
FokI GGATG 3 cut(s) 33, 584, 658
Fsp4HI GCNGC 8 cut(s) 134, 269, 295, 426, 438, 665, 713, 891
FspBI CTAG 1 cut(s) 351
FspI TGCGCA 1 cut(s) 45
GlaI GCGC 4 cut(s) 26, 45, 96, 156
GluI GCNGC 8 cut(s) 134, 269, 295, 426, 438, 665, 713, 891
GsuI CTGGAG 1 cut(s) 503
HaeII RGCGCY 1 cut(s) 28
HaeIII GGCC 1 cut(s) 88
HapII CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
HgaI GACGC 1 cut(s) 487
HhaI GCGC 4 cut(s) 27, 46, 97, 157
Hin1I GRCGYC 1 cut(s) 25
Hin1II CATG 3 cut(s) 412, 504, 508
Hin6I GCGC 4 cut(s) 25, 44, 95, 155
HinP1I GCGC 4 cut(s) 25, 44, 95, 155
HincII GTYRAC 2 cut(s) 211, 577
HindII GTYRAC 2 cut(s) 211, 577
HinfI GANTC 9 cut(s) 64, 81, 122, 347, 379, 419, 467, 534, 565
HpaI GTTAAC 1 cut(s) 211
HpaII CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
HphI GGTGA 7 cut(s) 100, 140, 271, 454, 487, 661, 757
Hpy166II GTNNAC 6 cut(s) 211, 244, 251, 577, 720, 735
Hpy188I TCNGA 5 cut(s) 69, 121, 395, 601, 898
Hpy188III TCNNGA 4 cut(s) 286, 569, 640, 854
Hpy8I GTNNAC 6 cut(s) 211, 244, 251, 577, 720, 735
Hpy99I CGWCG 3 cut(s) 142, 322, 605
HpyAV CCTTC 3 cut(s) 11, 502, 772
HpyCH4III ACNGT 5 cut(s) 142, 248, 605, 672, 763
HpyCH4IV ACGT 4 cut(s) 189, 581, 659, 737
HpyCH4V TGCA 2 cut(s) 268, 504
HpyF10VI GCNNNNNNNGC 8 cut(s) 94, 274, 303, 333, 422, 434, 495, 673
HpyF3I CTNAG 6 cut(s) 77, 383, 522, 752, 834, 897
HpySE526I ACGT 4 cut(s) 189, 581, 659, 737
Hsp92I GRCGYC 1 cut(s) 25
Hsp92II CATG 3 cut(s) 412, 504, 508
HspAI GCGC 4 cut(s) 25, 44, 95, 155
KasI GGCGCC 1 cut(s) 24
KspAI GTTAAC 1 cut(s) 211
KspI CCGCGG 1 cut(s) 426
Kzo9I GATC 4 cut(s) 282, 329, 390, 430
LguI GCTCTTC 1 cut(s) 284
LmnI GCTCC 4 cut(s) 517, 632, 709, 810
Lsp1109I GCAGC 3 cut(s) 280, 676, 699
MaeI CTAG 1 cut(s) 351
MaeII ACGT 4 cut(s) 189, 581, 659, 737
MaeIII GTNAC 6 cut(s) 106, 149, 259, 308, 475, 490
MalI GATC 4 cut(s) 284, 331, 392, 432
MbiI CCGCTC 2 cut(s) 294, 416
MboI GATC 4 cut(s) 282, 329, 390, 430
MboII GAAGA 4 cut(s) 301, 408, 841, 896
MflI RGATCY 2 cut(s) 329, 430
MhlI GDGCHC 1 cut(s) 500
MluCI AATT 3 cut(s) 403, 843, 868
Mly113I GGCGCC 1 cut(s) 25
MlyI GAGTC 3 cut(s) 388, 476, 574
MmeI TCCRAC 2 cut(s) 587, 624
Mph1103I ATGCAT 1 cut(s) 506
MseI TTAA 4 cut(s) 210, 627, 819, 867
MslI CAYNNNNRTG 1 cut(s) 503
MspA1I CMGCKG 2 cut(s) 271, 425
MspI CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
MspR9I CCNGG 4 cut(s) 166, 588, 743, 840
MvaI CCWGG 3 cut(s) 166, 743, 840
MvnI CGCG 2 cut(s) 155, 425
MwoI GCNNNNNNNGC 8 cut(s) 94, 274, 303, 333, 422, 434, 495, 673
NarI GGCGCC 1 cut(s) 25
NciI CCSGG 1 cut(s) 588
NdeII GATC 4 cut(s) 282, 329, 390, 430
NlaIII CATG 3 cut(s) 412, 504, 508
NlaIV GGNNCC 3 cut(s) 26, 432, 513
NmeAIII GCCGAG 1 cut(s) 707
NmuCI GTSAC 5 cut(s) 106, 259, 308, 475, 490
NsbI TGCGCA 1 cut(s) 45
NsiI ATGCAT 1 cut(s) 506
NspI RCATGY 1 cut(s) 504
PciSI GCTCTTC 1 cut(s) 284
PcsI WCGNNNNNNNCGW 1 cut(s) 734
PfeI GAWTC 6 cut(s) 64, 81, 122, 347, 419, 534
PkrI GCNGC 8 cut(s) 135, 270, 296, 427, 439, 666, 714, 892
PleI GAGTC 3 cut(s) 387, 475, 573
PluTI GGCGCC 1 cut(s) 28
PmaCI CACGTG 1 cut(s) 582
PmlI CACGTG 1 cut(s) 582
PpsI GAGTC 3 cut(s) 387, 475, 573
Ppu21I YACGTR 2 cut(s) 582, 738
PshAI GACNNNNGTC 1 cut(s) 582
Psp6I CCWGG 3 cut(s) 164, 741, 838
PspCI CACGTG 1 cut(s) 582
PspGI CCWGG 3 cut(s) 164, 741, 838
PspN4I GGNNCC 3 cut(s) 26, 432, 513
PspPI GGNCC 1 cut(s) 448
PstI CTGCAG 1 cut(s) 270
PsuI RGATCY 2 cut(s) 329, 430
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 503
SacII CCGCGG 1 cut(s) 426
SapI GCTCTTC 1 cut(s) 284
SaqAI TTAA 4 cut(s) 210, 627, 819, 867
SatI GCNGC 8 cut(s) 134, 269, 295, 426, 438, 665, 713, 891
Sau3AI GATC 4 cut(s) 282, 329, 390, 430
Sau96I GGNCC 1 cut(s) 448
SchI GAGTC 3 cut(s) 388, 476, 574
ScrFI CCNGG 4 cut(s) 166, 588, 743, 840
SduI GDGCHC 1 cut(s) 500
SfcI CTRYAG 1 cut(s) 266
SfoI GGCGCC 1 cut(s) 26
Sfr303I CCGCGG 1 cut(s) 426
SgrBI CCGCGG 1 cut(s) 426
SinI GGWCC 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 503
Sse9I AATT 3 cut(s) 403, 843, 868
SspDI GGCGCC 1 cut(s) 24
SspMI CTAG 1 cut(s) 351
StyD4I CCNGG 4 cut(s) 164, 586, 741, 838
TaaI ACNGT 5 cut(s) 142, 248, 605, 672, 763
TaiI ACGT 4 cut(s) 192, 584, 662, 740
TaqI TCGA 3 cut(s) 285, 317, 853
TasI AATT 3 cut(s) 403, 843, 868
TauI GCSGC 5 cut(s) 136, 297, 428, 440, 893
TfiI GAWTC 6 cut(s) 64, 81, 122, 347, 419, 534
Tru1I TTAA 4 cut(s) 210, 627, 819, 867
Tru9I TTAA 4 cut(s) 210, 627, 819, 867
TscAI CASTG 4 cut(s) 270, 313, 377, 766
TseFI GTSAC 5 cut(s) 106, 259, 308, 475, 490
TseI GCWGC 3 cut(s) 268, 664, 712
Tsp45I GTSAC 5 cut(s) 106, 259, 308, 475, 490
TspDTI ATGAA 3 cut(s) 521, 716, 862
TspGWI ACGGA 4 cut(s) 335, 560, 645, 896
TspRI CASTG 4 cut(s) 270, 313, 377, 766
VpaK11BI GGWCC 1 cut(s) 448
XceI RCATGY 1 cut(s) 504
XmiI GTMKAC 1 cut(s) 719
XspI CTAG 1 cut(s) 351
Zsp2I ATGCAT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.