FvH4_6g52950

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001258
Physical Location & Seq
Reverse (-)
38885310 .. 38886230
921 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52950.t1

Sequence Viewer

Length: 921 bp
ATGGAAGGCGGAGAAGGGTGGCGTATGATAAGATGCGGAGCTGGTGCGCATGATACGAGTGTCTTGAATCAGATAATGCTGAGATTCCGGCCGATTGCGCCGAAGCCGGTCGCCGGAGGGTCAGGTTATTCGGGTGAGCCACCGGAAGGTAAGAGTAACGTGATCGGTTTGAGGAGGAGAACGAAGACGTCGAAGAGAAAGTACGTTAGGGTTAAGAAGAGAGAGGAAAATGGAAAAGAAAAGATGGAGGAGAATAATAAGCGGGTGGTGACACTGCAACTGTTGCCGGAGATCGAGAAGAGCGGCGACTACGGGGACGGCTCATCGGACGGCGGATCTAGTTGTTGCGAGTTTGATTCGACTAAGGGTACCAATATTTGTAATCACGAGTGGTTGAGTCTTAGTAAGATCGGAAGAGAGGATTATATGAGAGGTGATACGGCGGCGGATCCGACGGCGGTGATGGGAGGAGCGGAGGAGTCGTGGGTGACGGTGGAGTGTGTGACAGGCACATGCATGAAGGCTGCGCCTCCTCAAGGGTTTGGGATTCTCAGTACGAACGAGGAGAGAGTGAGGAGTCTAGAGGTTGACTCGTGTCCTGGATTTGTTTCCGACGGTTGGAACAGGGTTATGTGGCTGAACGGAGCGTTCAGGAGGATGGTGACGATGACGTGGCAGCCGGAGATAGCCGTGTGGTTAGCGATGAACGAGGAGCTGCCGTATACACACTCGGCGTTTACATGCCGAGTAAAGTTGAGATACACTGCTGTGGGTAACAAGGATAATTCCAAGGAGAATTTCTGCTACTCGCAAATGGTGCCTTGTGATTTGTGGAGAATGGACGGCGGAGGATTTGCATGGAGGCTCGACGTTAAAGCTGCGCTCACTCTGGCCGTCGATGCAGCTCCACTACATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

33.89

Weight (kDa)

7.5

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 160 - 296 1.1e-45 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 191
Acc16I TGCGCA 1 cut(s) 48
Acc65I GGTACC 1 cut(s) 368
AccB1I GGYRCC 2 cut(s) 368, 817
AccBSI CCGCTC 2 cut(s) 303, 473
AccI GTMKAC 1 cut(s) 722
AclWI GGATC 3 cut(s) 343, 443, 456
AcoI YGGCCR 2 cut(s) 89, 891
AcsI RAATTY 1 cut(s) 796
AcyI GRCGYC 1 cut(s) 188
AfaI GTAC 3 cut(s) 203, 370, 556
AfiI CCNNNNNNNGG 4 cut(s) 113, 146, 536, 618
AgsI TTSAA 1 cut(s) 67
AjiI CACGTC 1 cut(s) 672
AjnI CCWGG 1 cut(s) 598
AjuI GAANNNNNNNTTGG 2 cut(s) 782, 814
AleI CACNNNNGTG 1 cut(s) 767
AluBI AGCT 4 cut(s) 41, 715, 878, 905
AluI AGCT 4 cut(s) 41, 715, 878, 905
AlwI GGATC 3 cut(s) 343, 443, 456
AoxI GGCC 2 cut(s) 89, 891
ApeKI GCWGC 5 cut(s) 524, 676, 715, 878, 902
ApoI RAATTY 1 cut(s) 796
Asp718I GGTACC 1 cut(s) 368
AspLEI GCGC 4 cut(s) 49, 100, 529, 883
AsuHPI GGTGA 6 cut(s) 146, 280, 446, 472, 499, 673
BaeI ACNNNNGTAYC 2 cut(s) 45, 78
BamHI GGATCC 1 cut(s) 448
BanI GGYRCC 2 cut(s) 368, 817
BarI GAAGNNNNNNTAC 2 cut(s) 185, 217
BauI CACGAG 2 cut(s) 386, 592
BbsI GAAGAC 1 cut(s) 191
BbvI GCAGC 5 cut(s) 511, 688, 702, 865, 914
BccI CCATC 3 cut(s) 238, 457, 652
BceAI ACGGC 8 cut(s) 334, 346, 456, 471, 674, 703, 859, 878
BciT130I CCWGG 1 cut(s) 600
BfaI CTAG 2 cut(s) 339, 581
BisI GCNGC 7 cut(s) 304, 444, 525, 677, 716, 879, 903
BlsI GCNGC 7 cut(s) 305, 445, 526, 678, 717, 880, 904
Bme1390I CCNGG 1 cut(s) 600
BmgBI CACGTC 1 cut(s) 672
BmiI GGNNCC 3 cut(s) 370, 450, 819
BmrFI CCNGG 1 cut(s) 600
BmsI GCATC 2 cut(s) 23, 889
BoxI GACNNNNGTC 1 cut(s) 594
BpiI GAAGAC 1 cut(s) 191
BplI GAGNNNNNCTC 2 cut(s) 575, 607
BpuEI CTTGAG 1 cut(s) 519
BsaHI GRCGYC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 789
BsaWI WCCGGW 1 cut(s) 142
BsaXI ACNNNNNCTCC 4 cut(s) 467, 497, 704, 734
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 146, 536, 618
Bse118I RCCGGY 1 cut(s) 106
BseBI CCWGG 1 cut(s) 600
BseDI CCNNGG 1 cut(s) 789
BseGI GGATG 1 cut(s) 663
BseLI CCNNNNNNNGG 4 cut(s) 113, 146, 536, 618
BseMII CTCAG 2 cut(s) 71, 565
BseRI GAGGAG 9 cut(s) 187, 190, 263, 483, 491, 522, 578, 589, 725
BseX3I CGGCCG 1 cut(s) 89
BseXI GCAGC 5 cut(s) 511, 688, 702, 865, 914
Bsh1285I CGRYCG 2 cut(s) 92, 111
BshFI GGCC 2 cut(s) 91, 893
BshNI GGYRCC 2 cut(s) 368, 817
BsiEI CGRYCG 2 cut(s) 92, 111
BsiSI CCGG 6 cut(s) 88, 107, 114, 143, 287, 680
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 4 cut(s) 113, 146, 536, 618
BsmFI GGGAC 1 cut(s) 329
BsnI GGCC 2 cut(s) 91, 893
Bsp143I GATC 5 cut(s) 162, 291, 335, 408, 448
BspANI GGCC 2 cut(s) 91, 893
BspCNI CTCAG 2 cut(s) 72, 564
BspLI GGNNCC 3 cut(s) 370, 450, 819
BspPI GGATC 3 cut(s) 343, 443, 456
BspQI GCTCTTC 1 cut(s) 293
BspT107I GGYRCC 2 cut(s) 368, 817
BsrBI CCGCTC 2 cut(s) 303, 473
BsrFI RCCGGY 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 789
BssMI GATC 5 cut(s) 162, 291, 335, 408, 448
BssNAI GTATAC 1 cut(s) 723
BssNI GRCGYC 1 cut(s) 188
BssSI CACGAG 2 cut(s) 386, 592
BssT1I CCWWGG 1 cut(s) 789
Bst1107I GTATAC 1 cut(s) 723
Bst2BI CACGAG 2 cut(s) 386, 592
Bst2UI CCWGG 1 cut(s) 600
Bst4CI ACNGT 3 cut(s) 282, 493, 617
Bst6I CTCTTC 4 cut(s) 188, 212, 293, 409
BstACI GRCGYC 1 cut(s) 188
BstAPI GCANNNNNTGC 2 cut(s) 283, 817
BstDEI CTNAG 4 cut(s) 80, 363, 401, 551
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 1 cut(s) 663
BstHHI GCGC 4 cut(s) 49, 100, 529, 883
BstKTI GATC 5 cut(s) 165, 294, 338, 411, 451
BstMBI GATC 5 cut(s) 162, 291, 335, 408, 448
BstMCI CGRYCG 2 cut(s) 92, 111
BstMWI GCNNNNNNNGC 4 cut(s) 97, 283, 817, 899
BstNI CCWGG 1 cut(s) 600
BstNSI RCATGY 2 cut(s) 516, 744
BstPAI GACNNNNGTC 1 cut(s) 594
BstSCI CCNGG 1 cut(s) 598
BstV1I GCAGC 5 cut(s) 511, 688, 702, 865, 914
BstV2I GAAGAC 1 cut(s) 191
BstX2I RGATCY 2 cut(s) 335, 448
BstYI RGATCY 2 cut(s) 335, 448
BstZ17I GTATAC 1 cut(s) 723
BstZI CGGCCG 1 cut(s) 89
BsuRI GGCC 2 cut(s) 91, 893
BtgZI GCGATG 1 cut(s) 716
BtrI CACGTC 1 cut(s) 672
BtsCI GGATG 1 cut(s) 663
BtsI GCAGTG 2 cut(s) 272, 762
BtsIMutI CAGTG 2 cut(s) 272, 762
CfoI GCGC 4 cut(s) 49, 100, 529, 883
Cfr10I RCCGGY 1 cut(s) 106
Csp6I GTAC 3 cut(s) 202, 369, 555
CviAII CATG 5 cut(s) 50, 513, 517, 741, 858
CviQI GTAC 3 cut(s) 202, 369, 555
DdeI CTNAG 4 cut(s) 80, 363, 401, 551
DpnI GATC 5 cut(s) 164, 293, 337, 410, 450
DpnII GATC 5 cut(s) 162, 291, 335, 408, 448
EaeI YGGCCR 2 cut(s) 89, 891
EagI CGGCCG 1 cut(s) 89
Eam1104I CTCTTC 4 cut(s) 188, 212, 293, 409
EarI CTCTTC 4 cut(s) 188, 212, 293, 409
EciI GGCGGA 4 cut(s) 24, 348, 461, 861
EclXI CGGCCG 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 789
Eco52I CGGCCG 1 cut(s) 89
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoRII CCWGG 1 cut(s) 598
EcoT14I CCWWGG 1 cut(s) 789
EcoT22I ATGCAT 1 cut(s) 518
ErhI CCWWGG 1 cut(s) 789
FaeI CATG 5 cut(s) 53, 516, 520, 744, 861
FaqI GGGAC 1 cut(s) 329
FatI CATG 5 cut(s) 49, 512, 516, 740, 857
FauI CCCGC 1 cut(s) 255
FblI GTMKAC 1 cut(s) 722
Fnu4HI GCNGC 7 cut(s) 304, 444, 525, 677, 716, 879, 903
FokI GGATG 1 cut(s) 670
Fsp4HI GCNGC 7 cut(s) 304, 444, 525, 677, 716, 879, 903
FspAI RTGCGCAY 1 cut(s) 48
FspBI CTAG 2 cut(s) 339, 581
FspI TGCGCA 1 cut(s) 48
GlaI GCGC 4 cut(s) 48, 99, 528, 882
GluI GCNGC 7 cut(s) 304, 444, 525, 677, 716, 879, 903
HaeIII GGCC 2 cut(s) 91, 893
HapII CCGG 6 cut(s) 88, 107, 114, 143, 287, 680
HhaI GCGC 4 cut(s) 49, 100, 529, 883
Hin1I GRCGYC 1 cut(s) 188
Hin1II CATG 5 cut(s) 53, 516, 520, 744, 861
Hin6I GCGC 4 cut(s) 47, 98, 527, 881
HinP1I GCGC 4 cut(s) 47, 98, 527, 881
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HinfI GANTC 8 cut(s) 67, 84, 356, 397, 479, 547, 577, 590
HpaII CCGG 6 cut(s) 88, 107, 114, 143, 287, 680
HphI GGTGA 6 cut(s) 146, 280, 446, 472, 499, 673
Hpy166II GTNNAC 3 cut(s) 589, 723, 738
Hpy188I TCNGA 5 cut(s) 72, 328, 413, 453, 613
Hpy188III TCNNGA 5 cut(s) 64, 295, 386, 581, 652
Hpy8I GTNNAC 3 cut(s) 589, 723, 738
Hpy99I CGWCG 5 cut(s) 193, 457, 617, 872, 899
HpyAV CCTTC 3 cut(s) 8, 140, 514
HpyCH4III ACNGT 3 cut(s) 282, 493, 617
HpyCH4IV ACGT 5 cut(s) 159, 188, 204, 671, 870
HpyCH4V TGCA 4 cut(s) 277, 516, 857, 902
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 283, 817, 899
HpyF3I CTNAG 4 cut(s) 80, 363, 401, 551
HpySE526I ACGT 5 cut(s) 159, 188, 204, 671, 870
Hsp92I GRCGYC 1 cut(s) 188
Hsp92II CATG 5 cut(s) 53, 516, 520, 744, 861
HspAI GCGC 4 cut(s) 47, 98, 527, 881
KpnI GGTACC 1 cut(s) 372
Kzo9I GATC 5 cut(s) 162, 291, 335, 408, 448
LguI GCTCTTC 1 cut(s) 293
LmnI GCTCC 5 cut(s) 38, 470, 644, 712, 910
Lsp1109I GCAGC 5 cut(s) 511, 688, 702, 865, 914
LweI GCATC 2 cut(s) 23, 889
MaeI CTAG 2 cut(s) 339, 581
MaeII ACGT 5 cut(s) 159, 188, 204, 671, 870
MaeIII GTNAC 6 cut(s) 155, 268, 487, 502, 661, 773
MalI GATC 5 cut(s) 164, 293, 337, 410, 450
MbiI CCGCTC 2 cut(s) 303, 473
MboI GATC 5 cut(s) 162, 291, 335, 408, 448
MboII GAAGA 5 cut(s) 196, 205, 229, 310, 426
MflI RGATCY 2 cut(s) 335, 448
MluCI AATT 2 cut(s) 784, 796
MlyI GAGTC 4 cut(s) 406, 488, 584, 586
MmeI TCCRAC 3 cut(s) 476, 599, 636
Mph1103I ATGCAT 1 cut(s) 518
MseI TTAA 2 cut(s) 213, 873
MslI CAYNNNNRTG 2 cut(s) 515, 767
MspI CCGG 6 cut(s) 88, 107, 114, 143, 287, 680
MspR9I CCNGG 1 cut(s) 600
MvaI CCWGG 1 cut(s) 600
MwoI GCNNNNNNNGC 4 cut(s) 97, 283, 817, 899
NdeII GATC 5 cut(s) 162, 291, 335, 408, 448
NlaIII CATG 5 cut(s) 53, 516, 520, 744, 861
NlaIV GGNNCC 3 cut(s) 370, 450, 819
NmeAIII GCCGAG 2 cut(s) 710, 770
NmuCI GTSAC 4 cut(s) 268, 487, 502, 661
NsbI TGCGCA 1 cut(s) 48
NsiI ATGCAT 1 cut(s) 518
NspI RCATGY 2 cut(s) 516, 744
OliI CACNNNNGTG 1 cut(s) 767
PciSI GCTCTTC 1 cut(s) 293
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PfeI GAWTC 4 cut(s) 67, 84, 356, 547
PfoI TCCNGGA 1 cut(s) 598
PkrI GCNGC 7 cut(s) 305, 445, 526, 678, 717, 880, 904
PleI GAGTC 4 cut(s) 405, 487, 584, 585
PpsI GAGTC 4 cut(s) 405, 487, 584, 585
PshAI GACNNNNGTC 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 598
PspGI CCWGG 1 cut(s) 598
PspN4I GGNNCC 3 cut(s) 370, 450, 819
PsuI RGATCY 2 cut(s) 335, 448
RsaI GTAC 3 cut(s) 203, 370, 556
RsaNI GTAC 3 cut(s) 202, 369, 555
RseI CAYNNNNRTG 2 cut(s) 515, 767
SapI GCTCTTC 1 cut(s) 293
SaqAI TTAA 2 cut(s) 213, 873
SatI GCNGC 7 cut(s) 304, 444, 525, 677, 716, 879, 903
Sau3AI GATC 5 cut(s) 162, 291, 335, 408, 448
SchI GAGTC 4 cut(s) 406, 488, 584, 586
ScrFI CCNGG 1 cut(s) 600
SfaNI GCATC 2 cut(s) 23, 889
SmiMI CAYNNNNRTG 2 cut(s) 515, 767
SmlI CTYRAG 1 cut(s) 534
SmoI CTYRAG 1 cut(s) 534
Sse9I AATT 2 cut(s) 784, 796
SspI AATATT 1 cut(s) 376
SspMI CTAG 2 cut(s) 339, 581
StyD4I CCNGG 1 cut(s) 598
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 3 cut(s) 282, 493, 617
TaiI ACGT 5 cut(s) 162, 191, 207, 674, 873
TaqI TCGA 5 cut(s) 191, 294, 359, 867, 897
TasI AATT 2 cut(s) 784, 796
TauI GCSGC 2 cut(s) 306, 446
TfiI GAWTC 4 cut(s) 67, 84, 356, 547
Tru1I TTAA 2 cut(s) 213, 873
Tru9I TTAA 2 cut(s) 213, 873
TscAI CASTG 2 cut(s) 279, 769
TseFI GTSAC 4 cut(s) 268, 487, 502, 661
TseI GCWGC 5 cut(s) 524, 676, 715, 878, 902
Tsp45I GTSAC 4 cut(s) 268, 487, 502, 661
TspDTI ATGAA 2 cut(s) 533, 719
TspGWI ACGGA 1 cut(s) 657
TspRI CASTG 2 cut(s) 279, 769
XagI CCTNNNNNAGG 1 cut(s) 534
XapI RAATTY 1 cut(s) 796
XbaI TCTAGA 1 cut(s) 580
XceI RCATGY 2 cut(s) 516, 744
XmiI GTMKAC 1 cut(s) 722
XspI CTAG 2 cut(s) 339, 581
ZraI GACGTC 1 cut(s) 189
Zsp2I ATGCAT 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.