Rh4DG374500

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001258
Physical Location & Seq
Forward (+)
59214829 .. 59215908
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG374500.1

Sequence Viewer

Length: 852 bp
ATGGAAGGCGGAGGAGAATGCAACGGTGGCGGTGAGAAGAAGCCTTCTGTTTTAAATCGGATATTGCTCAAATACCGGCCGATTGCGCCGAAACCGTTCACCGGAGGCACAGCTTTGGATAAGCTGCCCAAGAGAACCAAGAGAAAGTACGTTAGGACGGTCCGCAAATATAAAGAAGATGAAAACGGGAAAGACCAAATGACGGATGAGCAGCGCGTGGAGACACTGCAGCTGTTGCCTCAGATCATAGAGCAGAGTGGTAGTGACCTCTCCAAGCACTGTGGGGGATCTAGCTGTGAGGTTGATGCTATGATCGTTGAAGATAACAATCACTGGTTGAGCTTGAATGGAGCTGGAGATCCGACCGCGGCGGTGGGGAAGAAGCAGGTTGTTGTTGACAGCGTGTCAGATCCATCGGCGGTGATGGATCGGGTGGGAGGAGTGGAGTCGTGGGTGACGGTGGAGTGCGTGAGAGGCACATGCATGATGGCTCCGAGTTCTTCTCAAGGGTTTGGGTTTGGTCTTTCCGGGGTCAGTGCGGACGAGGAGAGAATGAGGAGATTGGAGAGAGACGCATGTCCCGGGTTCATATCGGACGGTTGGAACAGGGTGCAATGGCTGAACGGAGCGTTTAGGAGGATGGTGATGATGACGAGGCAGCAGCAACCGTTACCGGAGGTAACGGTGTGGTTATGGATGAATGAGGAGCTCCCGCACACGACGAACTCGGCTTGGTGCCTTGTGATTTGTGGAGGATGGACGGCGGAGGATTTGCATGGCGGCTCGACGTTGAAGCTGCCCTCACTCTCGGCGGTTGAACCAAACTCCGTTATATCCGATCAGGTAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

31.05

Weight (kDa)

5.7

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 148 - 248 6.6e-24 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 376
AccB1I GGYRCC 1 cut(s) 735
AccII CGCG 2 cut(s) 216, 368
AclWI GGATC 4 cut(s) 295, 353, 404, 435
AcoI YGGCCR 1 cut(s) 77
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 2 cut(s) 101, 202
AgsI TTSAA 4 cut(s) 320, 346, 793, 818
AhdI GACNNNNNGTC 1 cut(s) 403
AluBI AGCT 8 cut(s) 113, 124, 232, 294, 342, 353, 709, 796
AluI AGCT 8 cut(s) 113, 124, 232, 294, 342, 353, 709, 796
Alw21I GWGCWC 1 cut(s) 711
Alw26I GTCTC 2 cut(s) 215, 564
AlwI GGATC 4 cut(s) 295, 353, 404, 435
Ama87I CYCGRG 1 cut(s) 581
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 6 cut(s) 124, 211, 229, 658, 661, 796
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 2 cut(s) 88, 216
AspS9I GGNCC 1 cut(s) 160
AsuC2I CCSGG 3 cut(s) 529, 582, 583
AsuHPI GGTGA 5 cut(s) 44, 91, 433, 466, 655
AvaI CYCGRG 1 cut(s) 581
AvaII GGWCC 1 cut(s) 160
BanI GGYRCC 1 cut(s) 735
BanII GRGCYC 1 cut(s) 711
Bbv12I GWGCWC 1 cut(s) 711
BbvI GCAGC 6 cut(s) 111, 223, 241, 670, 673, 783
BccI CCATC 5 cut(s) 418, 421, 481, 634, 750
BceAI ACGGC 1 cut(s) 777
BcnI CCSGG 3 cut(s) 529, 582, 583
BcoDI GTCTC 2 cut(s) 215, 564
BfaI CTAG 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 227
BfuAI ACCTGC 1 cut(s) 376
BisI GCNGC 8 cut(s) 125, 212, 230, 369, 659, 662, 781, 797
BlsI GCNGC 8 cut(s) 126, 213, 231, 370, 660, 663, 782, 798
Bme1390I CCNGG 3 cut(s) 529, 582, 583
Bme18I GGWCC 1 cut(s) 160
BmeRI GACNNNNNGTC 1 cut(s) 403
BmeT110I CYCGRG 1 cut(s) 581
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 2 cut(s) 492, 737
BmrFI CCNGG 3 cut(s) 529, 582, 583
BmsI GCATC 1 cut(s) 295
BoxI GACNNNNGTC 1 cut(s) 576
BplI GAGNNNNNCTC 2 cut(s) 487, 519
BpmI CTGGAG 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 489
BpuMI CCSGG 3 cut(s) 529, 582, 583
BsaBI GATNNNNATC 1 cut(s) 327
BsaJI CCNNGG 3 cut(s) 366, 528, 581
BsaWI WCCGGW 2 cut(s) 101, 673
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 202
Bse118I RCCGGY 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 338
Bse3DI GCAATG 1 cut(s) 620
Bse8I GATNNNNATC 1 cut(s) 327
BseDI CCNNGG 3 cut(s) 366, 528, 581
BseGI GGATG 4 cut(s) 211, 645, 702, 761
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 2 cut(s) 101, 202
BseMI GCAATG 1 cut(s) 620
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 1 cut(s) 338
BseRI GAGGAG 5 cut(s) 27, 453, 560, 571, 719
BseX3I CGGCCG 1 cut(s) 77
BseXI GCAGC 6 cut(s) 111, 223, 241, 670, 673, 783
Bsh1236I CGCG 2 cut(s) 216, 368
Bsh1285I CGRYCG 2 cut(s) 80, 366
BshFI GGCC 1 cut(s) 79
BshNI GGYRCC 1 cut(s) 735
BsiEI CGRYCG 2 cut(s) 80, 366
BsiHKAI GWGCWC 1 cut(s) 711
BsiHKCI CYCGRG 1 cut(s) 581
BsiSI CCGG 5 cut(s) 76, 102, 528, 582, 674
BslFI GGGAC 1 cut(s) 564
BslI CCNNNNNNNGG 2 cut(s) 101, 202
BsmAI GTCTC 2 cut(s) 215, 564
BsmBI CGTCTC 1 cut(s) 564
BsmFI GGGAC 1 cut(s) 564
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 1 cut(s) 79
BsoBI CYCGRG 1 cut(s) 581
Bsp1286I GDGCHC 1 cut(s) 711
Bsp143I GATC 7 cut(s) 243, 287, 312, 358, 409, 427, 838
BspANI GGCC 1 cut(s) 79
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 2 cut(s) 216, 368
BspLI GGNNCC 2 cut(s) 492, 737
BspMAI CTGCAG 1 cut(s) 231
BspMI ACCTGC 1 cut(s) 376
BspPI GGATC 4 cut(s) 295, 353, 404, 435
BspT107I GGYRCC 1 cut(s) 735
BsrDI GCAATG 1 cut(s) 620
BsrFI RCCGGY 1 cut(s) 75
BsrI ACTGG 1 cut(s) 338
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 3 cut(s) 366, 528, 581
BssMI GATC 7 cut(s) 243, 287, 312, 358, 409, 427, 838
Bst4CI ACNGT 8 cut(s) 26, 96, 160, 281, 460, 599, 669, 685
BstAPI GCANNNNNTGC 1 cut(s) 235
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 4 cut(s) 211, 645, 702, 761
BstFNI CGCG 2 cut(s) 216, 368
BstHHI GCGC 2 cut(s) 88, 216
BstKTI GATC 7 cut(s) 246, 290, 315, 361, 412, 430, 841
BstMAI GTCTC 2 cut(s) 215, 564
BstMBI GATC 7 cut(s) 243, 287, 312, 358, 409, 427, 838
BstMCI CGRYCG 2 cut(s) 80, 366
BstMWI GCNNNNNNNGC 4 cut(s) 27, 85, 235, 474
BstNSI RCATGY 2 cut(s) 483, 579
BstPAI GACNNNNGTC 1 cut(s) 576
BstSCI CCNGG 3 cut(s) 527, 580, 581
BstSFI CTRYAG 1 cut(s) 227
BstUI CGCG 2 cut(s) 216, 368
BstV1I GCAGC 6 cut(s) 111, 223, 241, 670, 673, 783
BstX2I RGATCY 3 cut(s) 287, 358, 409
BstYI RGATCY 3 cut(s) 287, 358, 409
BstZI CGGCCG 1 cut(s) 77
BsuRI GGCC 1 cut(s) 79
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 4 cut(s) 211, 645, 702, 761
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 4 cut(s) 224, 277, 331, 541
BveI ACCTGC 1 cut(s) 376
CfoI GCGC 2 cut(s) 88, 216
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 160
Cfr42I CCGCGG 1 cut(s) 369
Cfr9I CCCGGG 1 cut(s) 581
CpoI CGGWCCG 1 cut(s) 160
CseI GACGC 1 cut(s) 581
Csp6I GTAC 1 cut(s) 148
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CspI CGGWCCG 1 cut(s) 160
CviAII CATG 4 cut(s) 480, 484, 576, 776
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 240
DpnI GATC 7 cut(s) 245, 289, 314, 360, 411, 429, 840
DpnII GATC 7 cut(s) 243, 287, 312, 358, 409, 427, 838
DraI TTTAAA 1 cut(s) 54
DriI GACNNNNNGTC 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 77
EagI CGGCCG 1 cut(s) 77
Eam1105I GACNNNNNGTC 1 cut(s) 403
EciI GGCGGA 2 cut(s) 24, 779
Ecl136II GAGCTC 1 cut(s) 709
EclXI CGGCCG 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 711
Eco47I GGWCC 1 cut(s) 160
Eco52I CGGCCG 1 cut(s) 77
Eco53kI GAGCTC 1 cut(s) 709
Eco88I CYCGRG 1 cut(s) 581
EcoICRI GAGCTC 1 cut(s) 709
EcoT22I ATGCAT 1 cut(s) 485
EcoT38I GRGCYC 1 cut(s) 711
Esp3I CGTCTC 1 cut(s) 564
FaeI CATG 4 cut(s) 483, 487, 579, 779
FaqI GGGAC 1 cut(s) 564
FatI CATG 4 cut(s) 479, 483, 575, 775
FauI CCCGC 1 cut(s) 720
Fnu4HI GCNGC 8 cut(s) 125, 212, 230, 369, 659, 662, 781, 797
FokI GGATG 4 cut(s) 218, 652, 709, 768
FriOI GRGCYC 1 cut(s) 711
Fsp4HI GCNGC 8 cut(s) 125, 212, 230, 369, 659, 662, 781, 797
FspBI CTAG 1 cut(s) 291
GlaI GCGC 2 cut(s) 87, 215
GluI GCNGC 8 cut(s) 125, 212, 230, 369, 659, 662, 781, 797
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 1 cut(s) 79
HapII CCGG 5 cut(s) 76, 102, 528, 582, 674
HgaI GACGC 1 cut(s) 581
HhaI GCGC 2 cut(s) 88, 216
Hin1II CATG 4 cut(s) 483, 487, 579, 779
Hin6I GCGC 2 cut(s) 86, 214
HinP1I GCGC 2 cut(s) 86, 214
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 1 cut(s) 446
HpaII CCGG 5 cut(s) 76, 102, 528, 582, 674
HphI GGTGA 5 cut(s) 44, 91, 433, 466, 655
Hpy166II GTNNAC 2 cut(s) 99, 397
Hpy188I TCNGA 7 cut(s) 60, 243, 363, 409, 495, 595, 838
Hpy8I GTNNAC 2 cut(s) 99, 397
Hpy99I CGWCG 2 cut(s) 724, 790
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 8 cut(s) 26, 96, 160, 281, 460, 599, 669, 685
HpyCH4IV ACGT 2 cut(s) 150, 788
HpyCH4V TGCA 5 cut(s) 21, 229, 483, 613, 775
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 85, 235, 474
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 2 cut(s) 150, 788
Hsp92II CATG 4 cut(s) 483, 487, 579, 779
HspAI GCGC 2 cut(s) 86, 214
KspI CCGCGG 1 cut(s) 369
Kzo9I GATC 7 cut(s) 243, 287, 312, 358, 409, 427, 838
LmnI GCTCC 5 cut(s) 350, 496, 626, 706, 714
Lsp1109I GCAGC 6 cut(s) 111, 223, 241, 670, 673, 783
LweI GCATC 1 cut(s) 295
MaeI CTAG 1 cut(s) 291
MaeII ACGT 2 cut(s) 150, 788
MaeIII GTNAC 4 cut(s) 263, 454, 669, 679
MalI GATC 7 cut(s) 245, 289, 314, 360, 411, 429, 840
MboI GATC 7 cut(s) 243, 287, 312, 358, 409, 427, 838
MboII GAAGA 5 cut(s) 49, 188, 332, 391, 492
MflI RGATCY 3 cut(s) 287, 358, 409
MhlI GDGCHC 1 cut(s) 711
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 2 cut(s) 386, 581
Mph1103I ATGCAT 1 cut(s) 485
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 482
MspA1I CMGCKG 2 cut(s) 232, 368
MspI CCGG 5 cut(s) 76, 102, 528, 582, 674
MspR9I CCNGG 3 cut(s) 529, 582, 583
Mva1269I GAATGC 1 cut(s) 23
MvnI CGCG 2 cut(s) 216, 368
MwoI GCNNNNNNNGC 4 cut(s) 27, 85, 235, 474
NciI CCSGG 3 cut(s) 529, 582, 583
NdeII GATC 7 cut(s) 243, 287, 312, 358, 409, 427, 838
NlaIII CATG 4 cut(s) 483, 487, 579, 779
NlaIV GGNNCC 2 cut(s) 492, 737
NmeAIII GCCGAG 2 cut(s) 707, 788
NmuCI GTSAC 2 cut(s) 263, 454
NsiI ATGCAT 1 cut(s) 485
NspI RCATGY 2 cut(s) 483, 579
PctI GAATGC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 95
PkrI GCNGC 8 cut(s) 126, 213, 231, 370, 660, 663, 782, 798
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PshAI GACNNNNGTC 1 cut(s) 576
Psp124BI GAGCTC 1 cut(s) 711
PspN4I GGNNCC 2 cut(s) 492, 737
PspPI GGNCC 1 cut(s) 160
PstI CTGCAG 1 cut(s) 231
PsuI RGATCY 3 cut(s) 287, 358, 409
PvuII CAGCTG 1 cut(s) 232
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 482
Rsr2I CGGWCCG 1 cut(s) 160
RsrII CGGWCCG 1 cut(s) 160
SacI GAGCTC 1 cut(s) 711
SacII CCGCGG 1 cut(s) 369
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 8 cut(s) 125, 212, 230, 369, 659, 662, 781, 797
Sau3AI GATC 7 cut(s) 243, 287, 312, 358, 409, 427, 838
Sau96I GGNCC 1 cut(s) 160
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 3 cut(s) 529, 582, 583
SduI GDGCHC 1 cut(s) 711
SfaNI GCATC 1 cut(s) 295
SfcI CTRYAG 1 cut(s) 227
Sfr303I CCGCGG 1 cut(s) 369
SgrBI CCGCGG 1 cut(s) 369
SinI GGWCC 1 cut(s) 160
SmaI CCCGGG 1 cut(s) 583
SmiMI CAYNNNNRTG 1 cut(s) 482
SmlI CTYRAG 1 cut(s) 504
SmoI CTYRAG 1 cut(s) 504
SspMI CTAG 1 cut(s) 291
SstI GAGCTC 1 cut(s) 711
StyD4I CCNGG 3 cut(s) 527, 580, 581
TaaI ACNGT 8 cut(s) 26, 96, 160, 281, 460, 599, 669, 685
TaiI ACGT 2 cut(s) 153, 791
TaqI TCGA 1 cut(s) 785
TauI GCSGC 2 cut(s) 371, 783
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 4 cut(s) 231, 284, 338, 541
TseFI GTSAC 2 cut(s) 263, 454
TseI GCWGC 6 cut(s) 124, 211, 229, 658, 661, 796
Tsp45I GTSAC 2 cut(s) 263, 454
TspDTI ATGAA 3 cut(s) 195, 577, 713
TspGWI ACGGA 3 cut(s) 218, 639, 817
TspMI CCCGGG 1 cut(s) 581
TspRI CASTG 4 cut(s) 231, 284, 338, 541
VpaK11BI GGWCC 1 cut(s) 160
XceI RCATGY 2 cut(s) 483, 579
XmaI CCCGGG 1 cut(s) 581
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 1 cut(s) 291
Zsp2I ATGCAT 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.